View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277_low_6 (Length: 569)
Name: NF1277_low_6
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 30 - 561
Target Start/End: Complemental strand, 26430424 - 26429893
Alignment:
| Q |
30 |
aagatctcaacagcattgaagcaggctggcaggtattatttaaatttcttgctatattgtcatcttctgtttgactcgattggttaatggcctctggtta |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
26430424 |
aagatctcaacagcattgaagcaggctggcaggtattatttaaatttcttgctatattgtcatcttctgtttgaatcgattggttaatggcctccggtta |
26430325 |
T |
|
| Q |
130 |
aggccgaatccatcagaagtatccgaacttcaaccctggccaaaacaatcattgaccatacttttcttatctcccaattgaaagtccatttcccttgaaa |
229 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26430324 |
aggccgaatcgatcagaagtatccaaacttcaaccctggccaaaacaatcattgaccatacttttcttatctcccaattgaaagtccatttcccttgaaa |
26430225 |
T |
|
| Q |
230 |
accagattgtcagaagcaaaactactgtcttaaaaataattttcaaatcaaattcattatcttttgaatgatattatttatcacttatcttctaatttca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26430224 |
accagattgtcagaagcaaaactactgtcttaaaaataattttcaaatcaaattcattatcttttgaatgatattatttatcacttatcttctaatttca |
26430125 |
T |
|
| Q |
330 |
tgtttgtcttgtctgctcttgcaacaattaggtcagccctgatttgtatggtgacaataacactagactcttcacttattggacagtgagttcccaatac |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26430124 |
tgtttgtcttgtctgctcttgcaacaattaggtcagccctgatttgtatggtgacaataacactagactcttcacttattggacagtgagttcccaatac |
26430025 |
T |
|
| Q |
430 |
aatcactccactttgtgctttcattaaattaatattgtctatagtttctcattcatttcatgaatttgtttgtttcattaatgtgacagagtgatgcata |
529 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26430024 |
aatcactccactttgtgctttcattaaattaatattgtctatagtttctcattcatttcatgaatttgtttgtttcattaatgtggcagagtgatgcata |
26429925 |
T |
|
| Q |
530 |
tcaagcaactggttgttataatctcctttgtt |
561 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
26429924 |
tcaagcaactggttgttataatctcctttgtt |
26429893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 42763496 - 42763546
Alignment:
| Q |
29 |
aaagatctcaac-agcattgaagcaggctggcaggtattatttaaatttct |
78 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
42763496 |
aaagatctcaagtagcattgaagcaggttggcaggtattatttaaatttct |
42763546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 42806249 - 42806299
Alignment:
| Q |
29 |
aaagatctcaac-agcattgaagcaggctggcaggtattatttaaatttct |
78 |
Q |
| |
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||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
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| T |
42806249 |
aaagatctcaagtagcattgaagcaggttggcaggtattgtttaaatttct |
42806299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 33049468 - 33049518
Alignment:
| Q |
29 |
aaagatctcaac-agcattgaagcaggctggcaggtattatttaaatttct |
78 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
33049468 |
aaagatctcaagtagcattgaagcaggttggcaggtattatttaaatttct |
33049518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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