View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277_low_7 (Length: 464)
Name: NF1277_low_7
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_low_7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 207 - 464
Target Start/End: Original strand, 29527756 - 29528012
Alignment:
| Q |
207 |
ttgaagggaatggcacagtgtgttggggatttgagttttgtggagtgtcaagattgtgttacagaggcaatccgacggttgagaaatgattgtacttctg |
306 |
Q |
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| T |
29527756 |
ttgaagggaatggcacagtgtgttggggatttgagttttgtggagtgtcaagattgtgttacagaggcaatccgacggttgagaaatgattgtacttctg |
29527855 |
T |
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| Q |
307 |
gggattatggagatatgttcttggggaagtgttatgcaaggtactctactggtggtgctggtggggcacatgcttactccaagcctcatggtaagaccca |
406 |
Q |
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| T |
29527856 |
gggattatggagatatgttcttggggaagtgttatgcaaggtactctactggtggtgctggtggggcacatgcttactccaagcctcatggtaagaccca |
29527955 |
T |
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| Q |
407 |
aattattattannnnnnnnccctaaactatattaaatactactacctaaaactaaaag |
464 |
Q |
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| T |
29527956 |
aattattatta-tttttttccctaaactatatcaaatactactacctaaaactaaaag |
29528012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 29527579 - 29527700
Alignment:
| Q |
30 |
caactagaaggatgttatgtgaaatatgacaatgttaagtttttaggcatgcaagataaaacgattgtgttgaagaaatgtgggcctgaagtagggtatg |
129 |
Q |
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| T |
29527579 |
caactagaagggtgttatgtgaaatatgacaatgttaagtttttaggcatgcaagataaaacgattgtgttgaagaaatgtgggcctgaagtagggtatg |
29527678 |
T |
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| Q |
130 |
acccgggtacgatagatgctgt |
151 |
Q |
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| T |
29527679 |
acccgggtacgatagatgctgt |
29527700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 361
Target Start/End: Original strand, 33327878 - 33328009
Alignment:
| Q |
230 |
tggggatttgagttttgtggagtgtcaagattgtgttacagaggcaatccgacggttgagaaatgattgtacttctggggattatggagatatgttcttg |
329 |
Q |
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| T |
33327878 |
tggggatcttagttttggggagtgtcaagattgtgttgttgaagcgatcggacggttgaaaagtgattgtggtactgcagattatggagatttgttcttg |
33327977 |
T |
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| Q |
330 |
gggaagtgttatgcaaggtactctactggtgg |
361 |
Q |
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| T |
33327978 |
ggaaaatgttatgcaagatattctactggtgg |
33328009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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