View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277_low_8 (Length: 443)
Name: NF1277_low_8
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_low_8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 83 - 443
Target Start/End: Complemental strand, 45182159 - 45181811
Alignment:
| Q |
83 |
gatatagtacaaattacgcatattatgcttcctccttctcctcttcgtgagttcaaagatatttatcttgtttttgagttgatggactctgatttacatc |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45182159 |
gatatagtacaaattacgcatattatgcttcctccttctcctcgtcgtgagttcaaagatatttatcttgtttttgagttgatggactctgatttacatc |
45182060 |
T |
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| Q |
183 |
aagtcatcaaggcaaataatgaccttactcctgatcatcacaagtttttcttgtaccaacttcttcgaggcataaataaaatatatacattcaggtatcc |
282 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45182059 |
aag--------gcaaataatgaccttactcctgatcatcacaagtttttcttgtaccaacttcttcgaggcataaa----atatatacattcaggtatcc |
45181972 |
T |
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| Q |
283 |
atcattaattataatcacttcacttcctttattattttagatagtaaactcatgtatctatttcattttggactggctcgagcatcatttagcgacactg |
382 |
Q |
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| T |
45181971 |
atcattaattataatcacttcacttcctttattattttagatattaaactcatgtatctatttcattttggactggctcgagcatcatttagcgacactg |
45181872 |
T |
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| Q |
383 |
catctactatatactggactgtaagtagtactctaatagtaatacacaaccatgttgatct |
443 |
Q |
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| T |
45181871 |
catctactatatactggactgtaagtagtactctaatagtaatacacaaccatgttgatct |
45181811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 32 - 253
Target Start/End: Complemental strand, 45175393 - 45175184
Alignment:
| Q |
32 |
atcctaagagaaatcaagctcctgcgcttgctccaagtccaacatcatcctgatatagtacaaattacgcatattatgcttcctccttctcctcttcgtg |
131 |
Q |
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| T |
45175393 |
atcctaagagaaatcaagctcttgcgcttgctc--ag-------gcatcctgatattgttgaaattaggcatattatgcttcctcctt---cacgccgtg |
45175306 |
T |
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| Q |
132 |
agttcaaagatatttatcttgtttttgagttgatggactctgatttacatcaagtcatcaaggcaaataatgaccttactcctgatcatcacaagttttt |
231 |
Q |
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| T |
45175305 |
agtttagggatatctatgttgtctttgagttgatggaatctgatctacatcaagtaattaaggcaaatcatgatcttactcctcagcaccaccaattttt |
45175206 |
T |
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| Q |
232 |
cttgtaccaacttcttcgaggc |
253 |
Q |
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| T |
45175205 |
cttgtatcaacttctccgaggc |
45175184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 48725013 - 48725084
Alignment:
| Q |
134 |
ttcaaagatatttatcttgtttttgagttgatggactctgatttacatcaagtcatcaaggcaaataatgac |
205 |
Q |
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| T |
48725013 |
ttcaaagatatatatgttgtttttgaacttatggaatcagatttacatcaagtcatcaaagcaaatgatgac |
48725084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 15160986 - 15161069
Alignment:
| Q |
170 |
tctgatttacatcaagtcatcaaggcaaataatgaccttactcctgatcatcacaagtttttcttgtaccaacttcttcgaggc |
253 |
Q |
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|||||| ||||||| || || |||||||||||||| ||||||| || || ||||| | |||| | |||||||||||||||||| |
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| T |
15160986 |
tctgatgtacatcatgtaattaaggcaaataatgatcttactctagaccaccacaaatatttcctctaccaacttcttcgaggc |
15161069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 253
Target Start/End: Complemental strand, 7253216 - 7253097
Alignment:
| Q |
134 |
ttcaaagatatttatcttgtttttgagttgatggactctgatttacatcaagtcatcaaggcaaataatgaccttactcctgatcatcacaagtttttct |
233 |
Q |
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||||||||||| ||| |||| ||||| | ||||| |||||||||||||| |||||||| |||||| |||| || || || || ||| || |||||||| |
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| T |
7253216 |
ttcaaagatatatatgttgtatttgaactcatggaatctgatttacatcaggtcatcaaagcaaatgatgatctgacaccagagcattaccagtttttcc |
7253117 |
T |
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| Q |
234 |
tgtaccaacttcttcgaggc |
253 |
Q |
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| || || ||||| |||||| |
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| T |
7253116 |
tctatcagcttctacgaggc |
7253097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 30813281 - 30813349
Alignment:
| Q |
137 |
aaagatatttatcttgtttttgagttgatggactctgatttacatcaagtcatcaaggcaaataatgac |
205 |
Q |
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| T |
30813281 |
aaagatatttatgttgtctttgagctcatggagtctgatctccatcaagtcatcaaagctaatgatgac |
30813349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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