View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1277_low_9 (Length: 377)
Name: NF1277_low_9
Description: NF1277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1277_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 323
Target Start/End: Complemental strand, 7501195 - 7500886
Alignment:
| Q |
10 |
aacaaatcaatcaagagaaattacatgtcaagaatacatgaagtacattcttcaagccatacatatatagtcattgcgagttaaggcatgcttggctaag |
109 |
Q |
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| T |
7501195 |
aacaaatcaatcaagagaaattacatgtcaagaatacatgaagtacattcttcaagccatacata----gtcattgtgagttaaggcatgcttggctaag |
7501100 |
T |
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| Q |
110 |
atatgtgcctcatttatttgtattaattttgcatcaaatcgtcacaattctctggctcttccttcacttgataatcccttccccaattcgtattatctgt |
209 |
Q |
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| T |
7501099 |
atatgtgcctcatttatttgtattaattttgcatcaaatcgtcacaattctctggctcttccttcacttgataatcccttccccaattcgtattatctgt |
7501000 |
T |
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| Q |
210 |
tttgggggctatggcaaatctgtaacttgaatttataggcctatgtcatccaaattgcatcnnnnnnnggtgaagatacttgtcgtttgatataaggata |
309 |
Q |
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| T |
7500999 |
tttgggggctatggcaaatctgtaacttgaatttataggcttatgtcatccaaattgcatctttttttggtgaagatacttgtcgtttgatataaggata |
7500900 |
T |
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| Q |
310 |
agttgatggatatt |
323 |
Q |
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| T |
7500899 |
agttgatggatatt |
7500886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 28 - 325
Target Start/End: Original strand, 8142289 - 8142582
Alignment:
| Q |
28 |
aattacatgtcaagaatacatgaagtacattcttcaagccatacatatatagtcattgcgagttaaggcatgcttggctaagatatgtgcctcatttatt |
127 |
Q |
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| T |
8142289 |
aattacatatcaagaatagatgaagtacaatcttcaagccatacata----gtcactgtgagttaaggtatgattggctaagaagtgtgcctcatttatt |
8142384 |
T |
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| Q |
128 |
tgtattaattttgcatcaaatcgtcacaattctctggctcttccttcacttgataatcccttccccaattcgtattatctgttttgggggctatggcaaa |
227 |
Q |
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| T |
8142385 |
tatattcattttgcatcaaatcgacacaagactctggcccatccttcatctcataatcccttccccaattcatattagctgctttggaggctatgacaaa |
8142484 |
T |
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| Q |
228 |
tctgtaacttgaatttataggcctatgtcatccaaattgcatcnnnnnnnggtgaagatacttgtcgtttgatataaggataagttgatggatatttt |
325 |
Q |
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| T |
8142485 |
tctgtaacttgaatctataggcatatgtaatacaaattgcatctttttttggtgaagatacttgacatttggtataaagataaattgatggatatttt |
8142582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 122 - 321
Target Start/End: Complemental strand, 7498299 - 7498100
Alignment:
| Q |
122 |
tttatttgtattaattttgcatcaaatcgtcacaattctctggctcttccttcacttgataatcccttccccaattcgtattatctgttttgggggctat |
221 |
Q |
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| T |
7498299 |
tttatttatattcattttgcatcaaatcgtcacaagtctctggctcatccttcacctcataatctcttccccaattcatatttgctgctttggaggctat |
7498200 |
T |
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| Q |
222 |
ggcaaatctgtaacttgaatttataggcctatgtcatccaaattgcatcnnnnnnnggtgaagatacttgtcgtttgatataaggataagttgatggata |
321 |
Q |
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| T |
7498199 |
gacaaatctgtaactttaatctataggtatatgtaattcaaattgcatctttttttggtcaagatacttggcatttggtataaggataaattgatggata |
7498100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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