View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1278-2A-Insertion-10 (Length: 817)
Name: NF1278-2A-Insertion-10
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1278-2A-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 710; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 83 - 816
Target Start/End: Original strand, 8467399 - 8468132
Alignment:
| Q |
83 |
tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaaccttcttcttaccaccaaccgttccatttgtc |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8467399 |
tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaaccttcttcttaccaccaaccgttgcatttgtc |
8467498 |
T |
|
| Q |
183 |
ttcctcttctggttttgttgcttcttctccgcaacggagtcttttttctccttcttcggcttctcggcatcaggtagtttatacgaagctttgatcttca |
282 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8467499 |
ttcctcttctggttttgttgcttcttctccgcaacagagtcttttttctccttcttcggcttctcggcatcagatagtttatacgaagctttgatcttca |
8467598 |
T |
|
| Q |
283 |
ccagcttccctctcttggtttgattcttaagctgcaagcttagtatcttcttgaaatttgctgggagcaccggcttgaacttctcgtccatgtatttcgc |
382 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8467599 |
ccagcttccctctcttggtttgattcttaagctgcaagcttagtatcttcttgaaatttgctgggagcaccggcttgaacttctcgtccatgtatttcgc |
8467698 |
T |
|
| Q |
383 |
tatagcgtaagggcttgagccattcctctcccttagagccagtaaagcctccttaaccatctacaaaaataaataagtatacgcttaaatcaaccagtag |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
8467699 |
tatagcgtaagggcttgagccattcctctcctttagagccagtaaagcctccttaaccatctacaaaaataaataagtatacgcttaaatcaaccagaag |
8467798 |
T |
|
| Q |
483 |
tttgaaactatattgaaagtttgaaacaattacctcaaaatatggaggatgagaagctgttttggtttgtttggaagcttttggtttcatttccttcaca |
582 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8467799 |
tttgaaactatattgaaagtttgaaacaattacctcaaaatatggaggatgagaagctgttttggtttgtttggaagcttttggtttcatttccttcaca |
8467898 |
T |
|
| Q |
583 |
ggtttaggctccaccggcatttcaacatcatcaacttctccggaagcagacataactaatgaaacttttttactgagtagtgagttagatgaaacggtaa |
682 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8467899 |
ggtttaggctccaccggcatttcaacatcatcaacttctccggaagcagacataactaatgaaacttttttactgagtagtgagttagatgaaacggtaa |
8467998 |
T |
|
| Q |
683 |
cttgtgttaaatagttagataataattagtttgctattggtagagtccagtgatggaggttgccaacgtggcaaagagatatcaagaacgtacacgtggt |
782 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8467999 |
cttgtgttaaatagtaagataataattagtttgctattggtagagtccagtgatggaggttgccaacgtggcaaagagatatcaagaacgtacacgtggt |
8468098 |
T |
|
| Q |
783 |
gtcaatataagagttacttgtggaaagtgaaaaa |
816 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
8468099 |
gtcaatataagagttacttgtggaaagtgaaaaa |
8468132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 8467353 - 8467399
Alignment:
| Q |
7 |
aaaaacagttatcatattcacacatactatattacatagtttcagtt |
53 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8467353 |
aaaaacagttatcatattcacacatactatattacatagtttcagtt |
8467399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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