View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1278-2A-Insertion-11 (Length: 723)
Name: NF1278-2A-Insertion-11
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1278-2A-Insertion-11 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 332 - 723
Target Start/End: Complemental strand, 30963998 - 30963601
Alignment:
| Q |
332 |
agctggtttactgatccaactcttttcctctctaacatgtttctaccttgtatgtgtttggtgttaacatactagcgattattagtgtcttagactctta |
431 |
Q |
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| T |
30963998 |
agctggtttactgatccaactcttttcctctctaacatgtttctaccttgtatgtgtttggtgttaacatactagcgattattagtgtcttagactctta |
30963899 |
T |
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| Q |
432 |
ctatgcaatttatatgtctcagctttcaaaatcttccaccatgccgaacttgaagaagctactaaccattttgacacttttctgggatctggagggttcg |
531 |
Q |
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| T |
30963898 |
ctctgcaatttatatgtctcagctttcaaaatcttccaccatgccgaacttgaagaagctactaaccattttgacacttttctgggatctggagggttcg |
30963799 |
T |
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| Q |
532 |
gcagagtctattatggtaagaagctgcaaagatatccgcaaagtttaatgagaaaatgatgattgcactctttaattgtagttcaataccttggtgt--- |
628 |
Q |
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| T |
30963798 |
gcagagtctattatggtaagaagctgcaaagatatctgcaaagtttaatgagaaaatgatgattgcactctttaactgtagttcaataccttggtgtttt |
30963699 |
T |
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| Q |
629 |
--tttttacaggtatatgtttaaaacttttttacatagtaatttccgttcgttgcgatctctaaacagctgatagaaactatagat-aaagaaaatta |
723 |
Q |
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| T |
30963698 |
cctttttacaggtatatgtttaaaacttttttacatagtaatttccgttcgttgcgatctctaaacagctgatagaaactatagataaaagaaaatta |
30963601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 30964322 - 30964041
Alignment:
| Q |
8 |
atctatgcttgcagaatattatattcagaatgatgaagaatgtctggcaacccttttatgcacaaaacttgaaaaccaaacattgtatgagctgttggat |
107 |
Q |
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| T |
30964322 |
atctatgcttgcagaatattatattcagaatgaagaagaaaatctagcaaccattttatgcacaaaacttgaaaaccaaactttggttgagcttatggat |
30964223 |
T |
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| Q |
108 |
ccaagacttggcttcgaatcagaccttaagatcaacaagatgatgaccgctacggctaagcttgcattttggtgtttgaaatgtccacaagaattaaggc |
207 |
Q |
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| T |
30964222 |
ctaagacttggcttcaaatcagacattaagatcaccaagatgatgaccgctacagctgagcttgcattttggtgtttgaaatgtccacaagaattaaggc |
30964123 |
T |
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| Q |
208 |
ctaacatggaacaagtgctagagactctccatggcataaagcaagggagatatgagataaacccaataaaaggtacttgacg |
289 |
Q |
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| T |
30964122 |
ctaacatggaacaagtgctagagactctccatggcataaagcaagggagatatgagataaacccaataaaaggtacttgacg |
30964041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 30934145 - 30933870
Alignment:
| Q |
8 |
atctatgcttgcagaatattatattcagaatgatgaagaatgtctggcaacccttttatgcacaaaacttgaaaaccaaacatt-gtatgagctgttgga |
106 |
Q |
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| T |
30934145 |
atctatgcttgcagaatattatattcagaatgaagaagaatgtttggcaacccttctacgcaaaaaagttgaaaaccaagctttagta-gagctgttgga |
30934047 |
T |
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| Q |
107 |
tccaagacttggcttcgaatcagaccttaagatcaacaagatgatgaccgctacggctaagcttgcattttggtgtttgaaatgtccacaagaattaagg |
206 |
Q |
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| T |
30934046 |
tgtaagacttggcttcgaatcagaccttaagatcaacaagatgatgagcgctacggctgagcttgcattttggtgtctgaaatgtccacaagaattaagg |
30933947 |
T |
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| Q |
207 |
cctaacatggaacaagtgctagagactctccatggcataaagcaagggagatatgagataaacccaataaaaggtac |
283 |
Q |
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| T |
30933946 |
cctaacatggaacaagtgctagagactctccatggcataaagcaagggagatatgagataaactcgataaaaggtac |
30933870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 393 - 695
Target Start/End: Complemental strand, 30933560 - 30933259
Alignment:
| Q |
393 |
tgttaacatactagcgattattagtgtcttagactcttactatgcaatttatatgtctcagctttcaaaatcttccaccatgccgaacttgaagaagcta |
492 |
Q |
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| T |
30933560 |
tgttaatatactagagattattaatgttttagactcttactatgtaattcatacgtctcagctttcaaaatcttccaccatgccgaacttgaagaagcta |
30933461 |
T |
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| Q |
493 |
ctaaccattttgacacttttctgggatctggagggttcggcagagtctattatggtaagaagctgcaaagatatccgcaaagtttaatgagaaaatgatg |
592 |
Q |
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| T |
30933460 |
ctaacaagtttgacacttttttgggatctggagggttcggcagagtctactatggtaagaagctgcaaaggtatctgcaaattttaatgacaaaatgatg |
30933361 |
T |
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| Q |
593 |
attgcactctttaattgtagttcaataccttggtgttttttacaggtatatgtttaaaacttttttacatagtaatttccgttcgttgcgatctctaaac |
692 |
Q |
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| T |
30933360 |
actgcactctttaattgtagttcaataatttgct-ttttttacaggcatatgtttaaaacttttttacacagtaatttccattcgttacgttctctaaac |
30933262 |
T |
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| Q |
693 |
agc |
695 |
Q |
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| T |
30933261 |
agc |
30933259 |
T |
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