View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1278-2A-Insertion-12 (Length: 853)

Name: NF1278-2A-Insertion-12
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1278-2A-Insertion-12
NF1278-2A-Insertion-12
[»] chr5 (10 HSPs)
chr5 (8-853)||(12596515-12597359)
chr5 (643-821)||(15801793-15801972)
chr5 (733-818)||(30416745-30416830)
chr5 (163-269)||(30419705-30419811)
chr5 (193-270)||(20813687-20813764)
chr5 (193-270)||(20840126-20840203)
chr5 (723-818)||(20810919-20811014)
chr5 (723-818)||(20837274-20837369)
chr5 (11-82)||(20840263-20840334)
chr5 (193-270)||(15804949-15805026)
[»] chr8 (23 HSPs)
chr8 (622-820)||(3392654-3392853)
chr8 (615-845)||(3313641-3313866)
chr8 (641-820)||(3363030-3363210)
chr8 (12-270)||(3319567-3319822)
chr8 (112-243)||(31177715-31177846)
chr8 (13-82)||(31177849-31177918)
chr8 (122-269)||(3405766-3405913)
chr8 (690-818)||(3268362-3268491)
chr8 (723-796)||(7165837-7165910)
chr8 (690-809)||(3408456-3408576)
chr8 (723-818)||(3399790-3399885)
chr8 (724-802)||(3326154-3326232)
chr8 (154-270)||(3365986-3366102)
chr8 (155-270)||(3396848-3396963)
chr8 (723-809)||(31174672-31174758)
chr8 (8-69)||(3319813-3319874)
chr8 (8-80)||(3389177-3389249)
chr8 (723-809)||(3287625-3287711)
chr8 (8-69)||(3366280-3366341)
chr8 (193-270)||(3389359-3389436)
chr8 (690-802)||(13807725-13807838)
chr8 (193-270)||(3430248-3430327)
chr8 (723-794)||(3263698-3263769)
[»] chr3 (3 HSPs)
chr3 (723-818)||(6907020-6907115)
chr3 (736-811)||(32412146-32412221)
chr3 (122-269)||(6903920-6904067)
[»] scaffold0468 (2 HSPs)
scaffold0468 (723-818)||(7426-7521)
scaffold0468 (155-268)||(3344-3457)
[»] chr7 (2 HSPs)
chr7 (211-270)||(8370224-8370283)
chr7 (683-818)||(8372859-8372995)
[»] chr2 (2 HSPs)
chr2 (211-270)||(14765836-14765895)
chr2 (722-809)||(14768086-14768173)


Alignment Details
Target: chr5 (Bit Score: 765; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 8 - 853
Target Start/End: Complemental strand, 12597359 - 12596515
Alignment:
Q  8 gtacttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctcaannnnnnnatcagtcgacgggttaac 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| |||    
T  12597359 gtacttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctcaatttttttatcagtcgacgggtcaac 12597260  T
Q  108 ttcctccatcatatttgatgcctcaatttccaaagcattcgactagtcatatactagatagacacctgtttctctaatagtcaagccatgtccaatagct 207  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12597259 ttcctccatcatatttgatggctcaatttccaaagcattcgactagtcatatactagatagacacctgtttctctaatagtcaagccatgtccaatagct 12597160  T
Q  208 acgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatcactgtgtcttccttgtaaatctggatagtgaattttat 307  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12597159 acgaaaatctccacattgtcaccaactccaaaatttgatattaaaccttgccaatcttcatcactgtgtcttgcttgtaaatctggatagtgaattttat 12597060  T
Q  308 cattatgttcctctttcttcttcttctatatcatgaactaacttcaccaaagacttgagttgttacatgaagccacatgaatggaaatttagattagatt 407  Q
     |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12597059 tattatgttcctctttcttcttct---atatcatgaactaacttcaccaaagacttgagttgttacatgaagccacatgaatggaaatttagattagatt 12596963  T
Q  408 tttaaaatggacaacataaaaattctttgtacaaagagaaacacttgtgagatattgaaaccaaacacaaaaagtccatgttcaaagacaagcacttgtg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12596962 tttaaaatggacaacataaaaattctttgtacaaagagaaacacttgtgagatattgaaaccaaacacaaaaagtccatgttcaaagacaagcacttgtg 12596863  T
Q  508 acataatgaaaccaaacatagttgttttcagccaattgatgggaaaagtaaaaaatattttaagaacaaacacagctgctgtatctttaatgatcatgta 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12596862 acataatgaaaccaaacatagttgttttcagccaattgatgggaaaagttaaaaatattttaagaacaaacacagctgctgtatctttaatgatcatgta 12596763  T
Q  608 agataataaaagaaattcaaaacacgatgtagagaaattcttacggtatggtcggtcaatacatcaactacatcttcatggcaccacaatcgactacact 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12596762 agataataaaagaaattcaaaacacgatgtagagaaattcttacggtatggtcggtcaatacatcaactacatcttcatggcaccacaatcgactacact 12596663  T
Q  708 tctcaggctcctca-gtgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgag 806  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12596662 tctcaggctcctcaggtgaactttcgcgaacaatttctcttcccatgtcttgtagcaaagcattcattccaagcttgttattcttttcaacttttatgag 12596563  T
Q  807 gcttctctctatca-gtatcagcactgttattccaatatccgcttgaa 853  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  12596562 gcttctctctatcaggtatcagcactgttattccaatatccgcttgaa 12596515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 643 - 821
Target Start/End: Complemental strand, 15801972 - 15801793
Alignment:
Q  643 aattcttacggtatggtcggtcaatacatcaactacatcttcatggcaccacaatcgactacacttctcaggctcctcag-tgaactttcgcgaacaatt 741  Q
    |||||||||||| || |||| || |||||||||||||||||||   |||||||||||| |||  |||||||||||||||| ||||||||| |||||||||    
T  15801972 aattcttacggtttgttcggccagtacatcaactacatcttcaaaacaccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatt 15801873  T
Q  742 tctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatcag 821  Q
    |||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15801872 tctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcag 15801793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 733 - 818
Target Start/End: Complemental strand, 30416830 - 30416745
Alignment:
Q  733 cgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctat 818  Q
    ||||||||||||||||||| ||||  ||  ||| |||||||||||||||||||||||||||||||||||| |||||| | ||||||    
T  30416830 cgaacaatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctat 30416745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 30419811 - 30419705
Alignment:
Q  163 agatagacacctgtttctctaatagtcaagccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaat 262  Q
    |||| ||||||||||||| ||| |||||  ||||  || | |||||| |||||||||| |||||||||| |||| |||||| || ||| ||| |||||||    
T  30419811 agatggacacctgtttctttaacagtcataccattccctaaagctacaaaaatctccatattgtcaccagctcctaaatttgattttacaccctgccaat 30419712  T
Q  263 cttcatc 269  Q
    |||||||    
T  30419711 cttcatc 30419705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 20813764 - 20813687
Alignment:
Q  193 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 270  Q
    ||||| ||||||||||| ||||||||||||||||||||||||   |||||| | | || ||||| |||||||||||||    
T  20813764 ccatgcccaatagctacaaaaatctccacattgtcaccaacttttaaatttgacactacaccttcccaatcttcatca 20813687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 20840203 - 20840126
Alignment:
Q  193 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 270  Q
    ||||| ||||||||||| ||||||||||||||||||||||||   |||||| | | || ||||| |||||||||||||    
T  20840203 ccatgcccaatagctacaaaaatctccacattgtcaccaacttttaaatttgacaatacaccttcccaatcttcatca 20840126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 723 - 818
Target Start/End: Complemental strand, 20811014 - 20810919
Alignment:
Q  723 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctat 818  Q
    ||||||||| | | |||||  |||||||| ||||   |||||| | |||||||||||| ||||||||||||| ||||||| |||||| | ||||||    
T  20811014 tgaactttcaccagcaattgatcttcccatgtctctgagcaaatcgtgcattccaagcgtgttattcttttcgacttttacgaggctgcgctctat 20810919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 723 - 818
Target Start/End: Complemental strand, 20837369 - 20837274
Alignment:
Q  723 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctat 818  Q
    ||||||||| | | |||||  |||||||| ||||   |||||| | |||||||||||| ||||||||||||| ||||||| |||||| | ||||||    
T  20837369 tgaactttcaccagcaattgatcttcccatgtctctgagcaaatcgtgcattccaagcgtgttattcttttcgacttttacgaggctgcgctctat 20837274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 20840334 - 20840263
Alignment:
Q  11 cttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctcaa 82  Q
    ||||| |||||| |||||||||||||||| |||  |||||||||||| | ||||||||| ||| ||| ||||    
T  20840334 cttccacttcaggtgatggctccgttttcgcatcaggtgatggttgcgcgtccacttcaggtattggttcaa 20840263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 15805026 - 15804949
Alignment:
Q  193 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 270  Q
    ||||| |||| |||||| || || |||||||||| ||||||||| |||||| | | ||  ||||||||||||||||||    
T  15805026 ccatgcccaacagctacaaatatttccacattgttaccaactcctaaatttgacactatgccttgccaatcttcatca 15804949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 4e-56; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 622 - 820
Target Start/End: Original strand, 3392654 - 3392853
Alignment:
Q  622 attcaaaacacgatgtagagaaattcttacggtatggtcggtcaatacatcaactacatcttcatggcaccacaatcgactacacttctcaggctcctca 721  Q
    |||||||| || |||||||||||||||||||||||||||   || ||||| |||||| || ||||| |||||||||||  ||| |||||||||||||||     
T  3392654 attcaaaatacaatgtagagaaattcttacggtatggtcttccagtacattaactacgtcctcatgacaccacaatcgggtacgcttctcaggctcctcc 3392753  T
Q  722 g-tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatca 820  Q
    | ||||||||| ||||||||||| ||||||| |||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3392754 ggtgaactttcacgaacaatttcccttcccatgtctcgtagcaaatcatgcattccaagctttttattcttttcaacttttatgaggcttctctctatca 3392853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 615 - 845
Target Start/End: Complemental strand, 3313866 - 3313641
Alignment:
Q  615 aaaagaaattcaaaacacgatgtagagaaattcttacggtatggtcggtcaatacatcaactacatcttcatggcaccacaatcgactacacttctcagg 714  Q
    |||| ||||||||||  | ||||||| |||||||||| ||||||||||||| ||||||||||||||| |||||  ||||||||||||||| ||| |||||    
T  3313866 aaaataaattcaaaatgcaatgtagataaattcttacagtatggtcggtcagtacatcaactacatcctcatgataccacaatcgactacgcttttcagg 3313767  T
Q  715 ctcctca-gtgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctc 813  Q
    ||||||| |||||||||| || |||||||||| ||||| |||| | || ||| ||||||||||||||||||||| |||||||| |||||| ||||||| |    
T  3313766 ctcctcaggtgaactttcacggacaatttctcgtcccatgtctcgcagtaaatcatgcattccaagcttgttatacttttcaatttttattaggcttcgc 3313667  T
Q  814 tctatcagtatcagcactgttattccaatatc 845  Q
    ||       |||||||||||||||||||||||    
T  3313666 tc------aatcagcactgttattccaatatc 3313641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 641 - 820
Target Start/End: Complemental strand, 3363210 - 3363030
Alignment:
Q  641 gaaattcttacggtatggtcggtcaatacatcaactacatcttcatggcaccacaatcgactacacttctcaggctcctcag-tgaactttcgcgaacaa 739  Q
    |||||||||||||||| ||| | || ||||| |||||| || |||||||||||||||||  ||  ||| ||||||||||| | ||||||||| |||||||    
T  3363210 gaaattcttacggtatagtctgccagtacattaactacgtcctcatggcaccacaatcgggtatgcttttcaggctcctccggtgaactttcacgaacaa 3363111  T
Q  740 tttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctatca 820  Q
    |||| ||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3363110 tttcccttcccatgtctcgtagcaaagcatgcattccaagctttttattcttttcaacttttatgaggcttctctctatca 3363030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 3319822 - 3319567
Alignment:
Q  12 ttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctcaannnnnnnatcagtcgacgggttaacttcc 111  Q
    |||| |||||||||||| ||| |||||  |||| ||||||||||| |  |||||||||||||||||||| |        ||||| || |||| |||||||    
T  3319822 ttccacttcagctgatgtctcggtttttacattgggtgatggttggaattccacttcatgtaatggctccatttttgcgtcagtagatgggtcaacttcc 3319723  T
Q  112 tccatcatatttgatgcctcaatttccaaagcattcgactagtcatatactagatagacacctgtttctctaatagtcaagccatgtccaatagctacga 211  Q
       ||  ||||||||| ||||||||||| |||||| ||||  ||||||| ||||||||||   || ||  ||| |||| | |||||||||||| |||| |    
T  3319722 ---atagtatttgatgactcaatttccatagcatttgactgatcatatattagatagacattcgtctccttaacagtccatccatgtccaataactacaa 3319626  T
Q  212 aaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 270  Q
    ||||||||| ||||||||||||||| || ||| |||  |  ||||||||||||||||||    
T  3319625 aaatctccaaattgtcaccaactcctaattttgatacgacgccttgccaatcttcatca 3319567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 31177846 - 31177715
Alignment:
Q  112 tccatcatatttgatgcctcaatttccaaagcattcgactagtcatatactagatagacacctgtttctctaatagtcaagccatgtccaatagctacga 211  Q
    ||||| || ||||||| | ||||||||| |||||| |||| ||||||||||| ||||||| |||| ||  ||| ||| || ||||| ||||||||||| |    
T  31177846 tccataatgtttgatggcacaatttccatagcatttgactggtcatatactaaatagacagctgtctccttaacagttaatccatgcccaatagctacaa 31177747  T
Q  212 aaatctccacattgtcaccaactccaaaattt 243  Q
    ||| |||||||||||||||||| |||||||||    
T  31177746 aaacctccacattgtcaccaacaccaaaattt 31177715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 31177918 - 31177849
Alignment:
Q  13 tcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctcaa 82  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||  ||||||||||||||||||||||    
T  31177918 tcctcttcagctgatggctccgttttcacattaggtgatggttgcatttccacttcatgtaatggctcaa 31177849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 122 - 269
Target Start/End: Original strand, 3405766 - 3405913
Alignment:
Q  122 ttgatgcctcaatttccaaagcattcgactagtcatatactagatagacacctgtttctctaatagtcaagccatgtccaatagctacgaaaatctccac 221  Q
    |||||| |||||||||||  ||| | ||||  ||||||| |||||||||| | || ||  ||  |||||| ||||| |||| |||||| |||||||||||    
T  3405766 ttgatgactcaatttccattgcagttgactgatcatatattagatagacagcggtctccttagcagtcaatccatgcccaaaagctacaaaaatctccac 3405865  T
Q  222 attgtcaccaactccaaaatttaatattaaaccttgccaatcttcatc 269  Q
    ||||||||||||||| |||||| ||| || ||||| ||||||||||||    
T  3405866 attgtcaccaactcctaaatttgatactacaccttcccaatcttcatc 3405913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 690 - 818
Target Start/End: Original strand, 3268362 - 3268491
Alignment:
Q  690 accacaatcgactacacttctcaggctcctc-agtgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttatt 788  Q
    ||||||||||||||| |||| ||||||| |  | ||| ||||  |||||||| |||||||||| ||||  |||||||  |||||||||||| |||||| |    
T  3268362 accacaatcgactacgcttcccaggctcttttattgatcttttacgaacaatctctcttcccatgtctcttagcaaactatgcattccaagtttgttact 3268461  T
Q  789 cttttcaacttttatgaggcttctctctat 818  Q
    |||||||| ||||| |||||||||||||||    
T  3268462 cttttcaatttttaggaggcttctctctat 3268491  T

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Target: chr8; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 723 - 796
Target Start/End: Original strand, 7165837 - 7165910
Alignment:
Q  723 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaa 796  Q
    |||||||| |||||||||||||||||||| ||||   |||||| ||||||||||||||||||||||||||||||    
T  7165837 tgaactttggcgaacaatttctcttcccatgtctctaagcaaatcatgcattccaagcttgttattcttttcaa 7165910  T

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Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 690 - 809
Target Start/End: Original strand, 3408456 - 3408576
Alignment:
Q  690 accacaatcgactacacttctcaggctc-ctcagtgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttatt 788  Q
    ||||||||||||||| |||| |||| || ||   ||||||||| || |||||||||||||||| ||||  ||  ||| ||||||||||||||||||||||    
T  3408456 accacaatcgactacgcttcccaggttctcttgctgaactttcacggacaatttctcttcccatgtctcttattaaatcatgcattccaagcttgttatt 3408555  T
Q  789 cttttcaacttttatgaggct 809  Q
    ||| |||||||||| ||||||    
T  3408556 cttctcaacttttaggaggct 3408576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 723 - 818
Target Start/End: Original strand, 3399790 - 3399885
Alignment:
Q  723 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctat 818  Q
    ||||||||| | | ||||| ||||||||| ||||   |||||| |||||||||||||||||||||||||||| ||||||| |||||| | ||||||    
T  3399790 tgaactttcaccagcaattgctcttcccatgtctctgagcaaatcatgcattccaagcttgttattcttttcgacttttaggaggctgcgctctat 3399885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 724 - 802
Target Start/End: Original strand, 3326154 - 3326232
Alignment:
Q  724 gaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaactttta 802  Q
    |||||||| |||| |||||||||||||| ||||  || ||||  ||||||||||||||||||||||||||||| |||||    
T  3326154 gaactttcacgaataatttctcttcccatgtctcttatcaaacaatgcattccaagcttgttattcttttcaattttta 3326232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 3366102 - 3365986
Alignment:
Q  154 tcatatactagatagacacctgtttctctaatagtcaagccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaac 253  Q
    ||||||| |||||| ||| | |||||  ||| ||| || ||||| ||||||||||| |||||||||| ||||| ||||||||| |||||| | | ||  |    
T  3366102 tcatatattagataaacagcagtttccttaacagtaaatccatgcccaatagctacaaaaatctccaaattgttaccaactcctaaatttgacactatgc 3366003  T
Q  254 cttgccaatcttcatca 270  Q
    |||||||||||||||||    
T  3366002 cttgccaatcttcatca 3365986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 270
Target Start/End: Original strand, 3396848 - 3396963
Alignment:
Q  155 catatactagatagacacctgtttctctaatagtcaagccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaacc 254  Q
    |||||| |||||||||| | || ||  ||| |||||| ||||| ||||||||||| |||||||||||||||||| |||||   |||||| | | || |||    
T  3396848 catatattagatagacagccgtctccttaacagtcaatccatgcccaatagctacaaaaatctccacattgtcatcaacttttaaatttgacactacacc 3396947  T
Q  255 ttgccaatcttcatca 270  Q
    || |||||||||||||    
T  3396948 ttcccaatcttcatca 3396963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 723 - 809
Target Start/End: Complemental strand, 31174758 - 31174672
Alignment:
Q  723 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggct 809  Q
    |||| |||||| ||||||| ||||||||| ||||   |||||| ||||||||  |||||||||||| || |||||||||||||||||    
T  31174758 tgaaatttcgccaacaattgctcttcccatgtctctgagcaaatcatgcatttgaagcttgttatttttatcaacttttatgaggct 31174672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 3319874 - 3319813
Alignment:
Q  8 gtacttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttca 69  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||| |  |||||||||    
T  3319874 gtacttcctcttcagctgatggctccgttttcaaattcagtgatggttgtatttccacttca 3319813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 3389177 - 3389249
Alignment:
Q  8 gtacttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctc 80  Q
    |||||||||||||||||||||| ||| ||||  |||| ||||| |||| ||  ||||||||||||||||||||    
T  3389177 gtacttcctcttcagctgatggatccatttttacattgggtgacggtttcaattccacttcatgtaatggctc 3389249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 723 - 809
Target Start/End: Original strand, 3287625 - 3287711
Alignment:
Q  723 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggct 809  Q
    ||||||||| |||||||||||||||||||  |||  ||  ||| |||||||| ||||||||||||  || |||||||||| ||||||    
T  3287625 tgaactttcacgaacaatttctcttcccatatctcttattaaatcatgcatttcaagcttgttataattgtcaacttttaggaggct 3287711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 3366341 - 3366280
Alignment:
Q  8 gtacttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttca 69  Q
    |||||||||||||||||||||| || |||||| |||| || ||||||||||| ||| |||||    
T  3366341 gtacttcctcttcagctgatggttctgttttcacattaggagatggttgcacatcctcttca 3366280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 3389359 - 3389436
Alignment:
Q  193 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 270  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||| || ||| |||  |   |||||||||||||||||    
T  3389359 ccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatca 3389436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 690 - 802
Target Start/End: Complemental strand, 13807838 - 13807725
Alignment:
Q  690 accacaatcgactacacttctcaggctcctcag-tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttatt 788  Q
    ||||||||||||||| |||| || |||||||   ||| ||||  | |||||| |||||||||| |||| |||| ||| ||||||||||||| || | |||    
T  13807838 accacaatcgactacgcttcccaagctcctcttctgatcttttacaaacaatctctcttcccatgtctcgtagtaaaccatgcattccaagtttatcatt 13807739  T
Q  789 cttttcaactttta 802  Q
    |||||| |||||||    
T  13807738 cttttcgactttta 13807725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 3430327 - 3430248
Alignment:
Q  193 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatatt--aaaccttgccaatcttcatca 270  Q
    ||||| |||| |||||| ||| |||||||||||||||||||||| |||||| ||| |  | || ||||||||||||||||    
T  3430327 ccatgcccaaaagctacaaaattctccacattgtcaccaactcctaaatttgatactacacactttgccaatcttcatca 3430248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 723 - 794
Target Start/End: Original strand, 3263698 - 3263769
Alignment:
Q  723 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttc 794  Q
    ||||||||| | ||||||||||||||||| ||||  ||  ||| ||||||||||||  ||||||||||||||    
T  3263698 tgaactttcacaaacaatttctcttcccatgtctcttattaaatcatgcattccaattttgttattcttttc 3263769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 723 - 818
Target Start/End: Original strand, 6907020 - 6907115
Alignment:
Q  723 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctat 818  Q
    ||||||| | ||||||||||||||||||| ||||  ||  ||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||||    
T  6907020 tgaacttccacgaacaatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttttcaacttttaaaaggctcctctctat 6907115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 736 - 811
Target Start/End: Original strand, 32412146 - 32412221
Alignment:
Q  736 acaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttc 811  Q
    |||||||||||||||| ||||  ||||| | ||||||||||||| |||||||||||||||| |||||  |||||||    
T  32412146 acaatttctcttcccatgtctcttagcagatcatgcattccaagtttgttattcttttcaatttttacaaggcttc 32412221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 269
Target Start/End: Original strand, 6903920 - 6904067
Alignment:
Q  122 ttgatgcctcaatttccaaagcattcgactagtcatatactagatagacacctgt-ttctctaatagtcaagccatgtccaatagctacgaaaatctcca 220  Q
    |||||| |||||||| || |||| | |||| | |||||  |||||||||| |||| |||| ||| |||||| ||||| |||| |||||| |||||| |||    
T  6903920 ttgatggctcaatttgcatagcacttgactcggcatatgttagatagacaactgtcttct-taacagtcaatccatgcccaaaagctacaaaaatcccca 6904018  T
Q  221 cattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatc 269  Q
    || |||| |||||| | |||||| |||||| ||  ||||||||||||||    
T  6904019 cactgtccccaactgctaaatttgatattacactctgccaatcttcatc 6904067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 723 - 818
Target Start/End: Original strand, 7426 - 7521
Alignment:
Q  723 tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggcttctctctat 818  Q
    ||||||| ||||||| ||||||||||||| ||||  ||  ||| |||||||||||||||||||||||||||| |||||||  ||||| ||||||||    
T  7426 tgaacttccgcgaactatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttttcgacttttagaaggctcctctctat 7521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 268
Target Start/End: Original strand, 3344 - 3457
Alignment:
Q  155 catatactagatagacacctgt-ttctctaatagtcaagccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaac 253  Q
    |||||| |||||||||| |||| |||| |||  ||||| ||||| |||| |||||| |||||| |||||||||| |||||| | |||||| |||||| ||    
T  3344 catatattagatagacaactgtcttct-taacggtcaatccatgcccaaaagctacaaaaatccccacattgtccccaactgctaaatttgatattacac 3442  T
Q  254 cttgccaatcttcat 268  Q
      |||||||||||||    
T  3443 tctgccaatcttcat 3457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 8370224 - 8370283
Alignment:
Q  211 aaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 270  Q
    |||||||||||||||||||||||||| |||||| ||| || |||||||||||||||||||    
T  8370224 aaaatctccacattgtcaccaactcctaaatttgatactacaccttgccaatcttcatca 8370283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 683 - 818
Target Start/End: Original strand, 8372859 - 8372995
Alignment:
Q  683 tcatggcaccacaatcgactacacttctcaggctcctcag-tgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagct 781  Q
    ||||| |||||||||||||||  ||| |||||||| |  | |||||||||||  || ||| ||||||||| |||  |||| ||| |||||||   || ||    
T  8372859 tcatgacaccacaatcgactatgcttttcaggctcttttgctgaactttcgctgacgattgctcttcccatgtcgcgtagtaaatcatgcatctgaaact 8372958  T
Q  782 tgttattcttttcaacttttatgaggcttctctctat 818  Q
    |||||||||| ||||||||||||||||| | ||||||    
T  8372959 tgttattcttatcaacttttatgaggctacgctctat 8372995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 14765836 - 14765895
Alignment:
Q  211 aaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 270  Q
    |||||||| ||||||||||||||||| |||||| ||  || |||||||||||||||||||    
T  14765836 aaaatctcaacattgtcaccaactcctaaatttgatgctacaccttgccaatcttcatca 14765895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 722 - 809
Target Start/End: Original strand, 14768086 - 14768173
Alignment:
Q  722 gtgaactttcgcgaacaatttctcttcccacgtcttgtagcaaagcatgcattccaagcttgttattcttttcaacttttatgaggct 809  Q
    |||||||||  || |||||||||||||||| |||   || |||| ||||||||  |||||||||||||||| ||||||||| ||||||    
T  14768086 gtgaactttgacggacaatttctcttcccatgtcccatatcaaatcatgcatttgaagcttgttattctttacaacttttaagaggct 14768173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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