View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1278-2A-Insertion-14 (Length: 426)
Name: NF1278-2A-Insertion-14
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1278-2A-Insertion-14 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Original strand, 44137523 - 44137938
Alignment:
| Q |
8 |
cattgtaccttgtacgtaataataaaaaatagatatttacatgattaagttctgttatggatagcaataagcaactaatataagtcataagatgaagtaa |
107 |
Q |
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| T |
44137523 |
cattgtaccttgtacgtaataataaaaaatagatatttacatgattaagttctgttatggatagtaataagcaactaatataagtcataagatgaagtaa |
44137622 |
T |
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| Q |
108 |
aatattgtgtagaaaccaaacactgtaaaggggagagacaagtatgaagaaaccttttcgtgttgatctctaagaaaaggtttggtatgactcgtcctca |
207 |
Q |
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| T |
44137623 |
aatattgt--agaaaccaaacaccgtaaaggggagagacaagtatgaagaaaccttttcgtgttgatctctaagaaaaggtttggtatgactcgtcctca |
44137720 |
T |
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| Q |
208 |
tctacacatgaacgtcattatcataacaacaagatcttgggtaggccaattaaactccgtgaatgagggataattatgaaacctcactgttaatcatttt |
307 |
Q |
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| T |
44137721 |
tctacacatgaacgtcattatcataacaacaaaatcttgggtaggccaattaaactccgtgaatgagggataattatgaaacctcactgttaatcatttt |
44137820 |
T |
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| Q |
308 |
ttggttgagtatgaatccttaagaaggtgtagcttttttctttgggtgcaactagtgggtctaactttaattaaagcaatatctttccattcgaaaaaca |
407 |
Q |
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| T |
44137821 |
ttggttgagtatgaatccttaagaaggtgtagcttttttctttgggtgcaactagtgggtctaactttaattaaagcaatatctttccattcg-aaaaca |
44137919 |
T |
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| Q |
408 |
actttgtccacccctatat |
426 |
Q |
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| T |
44137920 |
actttgtccacccctatat |
44137938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 426
Target Start/End: Original strand, 50057754 - 50058173
Alignment:
| Q |
8 |
cattgtaccttgtacgtaataataaaaaatagatatttacatgattaagttctgttatggatagcaataagcaactaata------taagtcataagatg |
101 |
Q |
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| T |
50057754 |
cattgtaccttgtacgtaataataaaaaatagatatttacatgattaggttctgtcatggata--aagaatgaaataataagcaattaag--ataagatg |
50057849 |
T |
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| Q |
102 |
aagtaaaatattgtgtagaaaccaaacactgtaaaggggagagacaagtatgaagaaaccttttcgtgttgatctctaagaaaaggtttggtatgactcg |
201 |
Q |
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| T |
50057850 |
aagtaaaaaatattgtatcaaccaaacgctgtaaaggggagagacaagtatggagaaaccttttcgtgttgatctctaataaaaggtttggtatgactcg |
50057949 |
T |
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| Q |
202 |
tcctcatctacacatgaacgtcattatcataacaacaagatcttgggtaggccaattaaactccgtgaatgagggataattatgaaacctcactgttaat |
301 |
Q |
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| T |
50057950 |
tcctcatcaacacatgaacgtcattatcaaaacaacaagatcttgggtaggccaattaaactccgtgaatgagggataattacaaaacctcactgttact |
50058049 |
T |
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| Q |
302 |
cattttttggttgagtatgaatccttaagaaggtgtagcttttttctttgggtgcaactagtgggtctaactttaattaaagcaatatctttccattcga |
401 |
Q |
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| T |
50058050 |
cattttttggttgagtatgagtccttaagaaggtctagcttttttctttgggtccaactaatgggtctaactttaattaaagtaatatctttccattcg- |
50058148 |
T |
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| Q |
402 |
aaaacaactttgtccacccctatat |
426 |
Q |
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| T |
50058149 |
aaaacaactttgtccacccctatat |
50058173 |
T |
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