View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1278-2A-Insertion-15 (Length: 481)

Name: NF1278-2A-Insertion-15
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1278-2A-Insertion-15
NF1278-2A-Insertion-15
[»] chr6 (5 HSPs)
chr6 (19-121)||(6761813-6761915)
chr6 (340-477)||(28669255-28669392)
chr6 (386-446)||(33593254-33593315)
chr6 (398-477)||(7622034-7622115)
chr6 (372-447)||(4596935-4597011)
[»] chr1 (3 HSPs)
chr1 (325-474)||(24117418-24117569)
chr1 (339-405)||(22789145-22789210)
chr1 (374-477)||(39845280-39845387)
[»] chr3 (2 HSPs)
chr3 (324-473)||(6861197-6861349)
chr3 (368-477)||(20766876-20766985)
[»] chr5 (4 HSPs)
chr5 (368-475)||(13341719-13341828)
chr5 (367-474)||(29270093-29270204)
chr5 (391-477)||(19377589-19377677)
chr5 (396-448)||(15446188-15446241)
[»] chr2 (2 HSPs)
chr2 (213-418)||(19245415-19245628)
chr2 (368-477)||(27749815-27749926)
[»] chr7 (2 HSPs)
chr7 (339-481)||(8304012-8304153)
chr7 (367-415)||(17809230-17809278)
[»] chr8 (4 HSPs)
chr8 (171-235)||(26575433-26575498)
chr8 (324-395)||(26879497-26879569)
chr8 (64-151)||(27813470-27813556)
chr8 (324-401)||(26575248-26575323)
[»] chr4 (1 HSPs)
chr4 (384-477)||(18437638-18437733)
[»] scaffold0526 (1 HSPs)
scaffold0526 (368-447)||(8120-8199)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 6761915 - 6761813
Alignment:
Q  19 aatattttcatagctattattaactgtaaaagggaaaaagtgtacgtaaaggtaccctttctgtttgcattgataatgttatgtattctagttttagatt 118  Q
    ||||||||||||||||||| ||||  ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  6761915 aatattttcatagctattagtaaccataaaagggaaaaagtgggcgtaaaggtaccctttctgtttgcattgataatgttatatagtctagttttagatt 6761816  T
Q  119 gtt 121  Q
    |||    
T  6761815 gtt 6761813  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 477
Target Start/End: Original strand, 28669255 - 28669392
Alignment:
Q  340 tttaagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttactcacttatgaacaagtattttgt-agacatgtaggatttg-ctt 437  Q
    ||||||| ||||| ||||||||| | ||||  |||||||| |||||||||||||| || |||||| | ||||||||||| | |||| ||||||||| |||    
T  28669255 tttaagtattttggtaggcatctagtctttc-ccttgaaacttaatagtcacttattcgcttatg-ataagtattttgtcacacatctaggatttgcctt 28669352  T
Q  438 taagtatttttactcggttttttatcattattatgactac 477  Q
    ||||||||||  ||  ||| ||||  ||||||||||||||    
T  28669353 taagtattttgtctaagttgtttagtattattatgactac 28669392  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 33593315 - 33593254
Alignment:
Q  386 agtcacttactcacttatgaacaagtattttgt-agacatgtaggatttgctttaagtattt 446  Q
    |||||||||||||||||||| ||| ||||||||  | ||| |||||||||||||||||||||    
T  33593315 agtcacttactcacttatgatcaaatattttgtcgggcatctaggatttgctttaagtattt 33593254  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 477
Target Start/End: Complemental strand, 7622115 - 7622034
Alignment:
Q  398 acttatgaacaagtattttgtaga-catgtaggatttgc-tttaagtatttttactcggttttttatcattattatgactac 477  Q
    |||||||| |||||||||||| || ||| |||||||||| ||||| ||||||  || |||| ||||||||||| ||||||||    
T  7622115 acttatgatcaagtattttgtcgagcatttaggatttgcctttaaatattttgtctaggttgtttatcattatcatgactac 7622034  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 447
Target Start/End: Complemental strand, 4597011 - 4596935
Alignment:
Q  372 ccttgaaatttaatagtcacttactcacttatgaacaagtattttgta-gacatgtaggatttgctttaagtatttt 447  Q
    |||| ||| |||||||||| ||||||| |||||| ||| ||||||||  | ||| |||||||| |||||||||||||    
T  4597011 ccttaaaacttaatagtcatttactcatttatgatcaattattttgtctggcatctaggatttactttaagtatttt 4596935  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 325 - 474
Target Start/End: Original strand, 24117418 - 24117569
Alignment:
Q  325 gcatctaggctttgctttaagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttactcacttatgaacaagtattttg-tagaca 423  Q
    ||||||||| |||||||||||| |||||||||| |||| | |||| ||||||||| ||||||||||||| ||||||||||| |||||||| || ||| ||    
T  24117418 gcatctaggatttgctttaagtattttgttagggatctagtcttt-gccttgaaacttaatagtcacttcctcacttatgatcaagtattatgttaggca 24117516  T
Q  424 tgtaggatttgc--tttaagtatttttactcggttttttatcattattatgac 474  Q
    | ||||||||||  ||||| ||||||  || |||| |||||||||||||||||    
T  24117517 tctaggatttgcattttaaatattttatctaggttgtttatcattattatgac 24117569  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 339 - 405
Target Start/End: Original strand, 22789145 - 22789210
Alignment:
Q  339 ctttaagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttactcacttatga 405  Q
    |||||||| ||||||||||||||| |  |||| |||||||| |||||||||||||||||||||||||    
T  22789145 ctttaagtattttgttaggcatctagtttttt-ccttgaaacttaatagtcacttactcacttatga 22789210  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 39845387 - 39845280
Alignment:
Q  374 ttgaaatttaatagtcacttactcacttatgaacaagtattttgt-agacatgtaggatttgc---tttaagtatttttactcggttttttatcattatt 469  Q
    |||||| |||| |||||||||||||||||||| |||||||||  |  | ||| ||||||||||   ||||||||||||  || |||| |||| |||||||    
T  39845387 ttgaaacttaagagtcacttactcacttatgatcaagtatttaatcgggcatctaggatttgcctttttaagtattttgtctaggttgtttagcattatt 39845288  T
Q  470 atgactac 477  Q
    ||||||||    
T  39845287 atgactac 39845280  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 324 - 473
Target Start/End: Complemental strand, 6861349 - 6861197
Alignment:
Q  324 tgcatctaggctttgc-tttaagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttactcacttatgaacaagtattttgt-aga 421  Q
    ||||||||| |||||| |||| || ||||||||||||||| | || || | ||||||||||||||||||||| |||||||||| ||||| |||||| |||    
T  6861349 tgcatctagactttgcctttatgtattttgttaggcatctagtctcttactttgaaatttaatagtcacttaatcacttatgatcaagtgttttgtcaga 6861250  T
Q  422 catgtaggatttg-ctttaagtatttttactcggttttttatcattattatga 473  Q
    ||| ||||||| | |||| ||||||||  || |||| |||| |||||||||||    
T  6861249 catctaggattcgcctttgagtattttgtctaggttgtttagcattattatga 6861197  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 477
Target Start/End: Complemental strand, 20766985 - 20766876
Alignment:
Q  368 tttgccttgaaatttaatagtcacttactcacttatgaacaagtattttg-tagacatgtaggatttg-ctttaagtatttttactcggttttttatcat 465  Q
    |||||||||||| ||||||||  || |||||||| ||| ||||||||||| ||| ||| ||| ||||| |||| ||||||||   | |||| |||| |||    
T  20766985 tttgccttgaaacttaatagt--ctaactcacttgtgatcaagtattttgttaggcatctagaatttgcctttgagtattttgtttaggttgtttaacat 20766888  T
Q  466 tattatgactac 477  Q
    ||||||||||||    
T  20766887 tattatgactac 20766876  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 475
Target Start/End: Complemental strand, 13341828 - 13341719
Alignment:
Q  368 tttgccttgaaatttaat-agtcacttactcacttatgaacaagtattttgta-gacatgtaggatttgctttaagtatttttactcggttttttatcat 465  Q
    |||||||||||| ||||  |||||||||||||||||||| |||||| |||||| | ||| ||||||||||||||||||||||  || |||  |||| |||    
T  13341828 tttgccttgaaacttaaagagtcacttactcacttatgatcaagtactttgtaaggcatctaggatttgctttaagtattttgtctaggtcgtttagcat 13341729  T
Q  466 tattatgact 475  Q
    ||||||||||    
T  13341728 tattatgact 13341719  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 474
Target Start/End: Original strand, 29270093 - 29270204
Alignment:
Q  367 ttttgccttgaaatttaatagtcacttactcacttatgaacaagtattttgt-agacatgtaggatttgc---tttaagtatttttactcggttttttat 462  Q
    |||||||||||||  |||||| ||||| ||||||||||| |||||||||||| |||||| || ||||| |   ||||||||||||  || |||| ||||     
T  29270093 ttttgccttgaaacgtaatagacactttctcacttatgatcaagtattttgtgagacatttaagattttcctttttaagtattttatctaggttgtttag 29270192  T
Q  463 cattattatgac 474  Q
    ||||||||||||    
T  29270193 cattattatgac 29270204  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 477
Target Start/End: Original strand, 19377589 - 19377677
Alignment:
Q  391 cttactcacttatgaacaagtattttgt-agacatgtaggatttgc-tttaagtatttttactcggttttttatcattattatgactac 477  Q
    ||||||||||| ||| |||||||||||| || ||| |||||||| | ||||||||||||  || |||| |||| |||||||||||||||    
T  19377589 cttactcacttgtgatcaagtattttgtcaggcatctaggatttacctttaagtattttgtctaggttgtttaacattattatgactac 19377677  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 15446188 - 15446241
Alignment:
Q  396 tcacttatgaacaagtattttgtagacatgtaggatttg-ctttaagtattttt 448  Q
    |||||||||| ||||||||||||||| || ||||||||| ||||||| ||||||    
T  15446188 tcacttatgatcaagtattttgtagatatctaggatttgtctttaagcattttt 15446241  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 213 - 418
Target Start/End: Original strand, 19245415 - 19245628
Alignment:
Q  213 ttttcttttattctttcacaccaaacagtccgttcac---aagagattgatgaagaccaacgtgttgatatatgatggtggataattcatatatctgatg 309  Q
    |||| |||||||||||||||||  ||||||  |||||   ||||||||||||||||| |||||||||||||  ||| | ||||||| ||||||  |||      
T  19245415 tttttttttattctttcacaccgcacagtctcttcaccgtaagagattgatgaagacgaacgtgttgatat--gataggggataatccatataattgaca 19245512  T
Q  310 attttttcgtgt------aatgcatctaggctttgcttt-aagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttactcactta 402  Q
    |||| ||||||       | |||||||| | |||||||| || | ||||||||||||||| | |||||| ||||||| |||| ||||||| ||| |||||    
T  19245513 atttcttcgtgatttatgattgcatctatgttttgcttttaaatattttgttaggcatctagtcttttgtcttgaaacttaacagtcactcacttactta 19245612  T
Q  403 tgaacaagtattttgt 418  Q
    ||| ||| ||||||||    
T  19245613 tgatcaaatattttgt 19245628  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 477
Target Start/End: Complemental strand, 27749926 - 27749815
Alignment:
Q  368 tttgccttgaaatttaatagtcacttactcacttatgaacaagtattttgt-agacatgtagga-tttgctttaagtatttttactcggttttttatcat 465  Q
    |||||||||||| ||||||| |||||| ||| |||||| |||||||||||| |||||| || || ||| |||||||||||||   | |||| |||| |||    
T  27749926 tttgccttgaaacttaatagccacttagtcatttatgatcaagtattttgtcagacatatatgattttcctttaagtattttgtttaggttgtttaacat 27749827  T
Q  466 tattatgactac 477  Q
    ||||||||||||    
T  27749826 tattatgactac 27749815  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 481
Target Start/End: Original strand, 8304012 - 8304153
Alignment:
Q  339 ctttaagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttactcacttatgaacaagtattttgt-agacatgtaggatttgc-t 436  Q
    |||||| | ||||||||||||||| | |||| || |||||||||||||| |  |||||||||| ||| |||||||||| | ||  || |||||||||| |    
T  8304012 ctttaaatattttgttaggcatctagtctttggc-ttgaaatttaatagcc--ttactcacttgtgatcaagtattttatcaggtatctaggatttgcct 8304108  T
Q  437 ttaagtatttttactcggttttttatcattattatgactaccaaa 481  Q
    |||||||||||  || |||| |||| |||||||||||||||||||    
T  8304109 ttaagtattttgtctaggttgtttagcattattatgactaccaaa 8304153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 17809278 - 17809230
Alignment:
Q  367 ttttgccttgaaatttaatagtcacttactcacttatgaacaagtattt 415  Q
    ||||||||| ||| |||| |||||||||||||||| ||| |||||||||    
T  17809278 ttttgccttaaaacttaagagtcacttactcacttgtgatcaagtattt 17809230  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 26575498 - 26575433
Alignment:
Q  171 tttgtatcagttacccggttctaaaaatacatcaaa-accaagttttcttttattctttcacacca 235  Q
    ||||||||||| ||||||||||| |||||||| ||| |||||||||  ||||||||||||||||||    
T  26575498 tttgtatcagtgacccggttctataaatacataaaataccaagtttctttttattctttcacacca 26575433  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 395
Target Start/End: Original strand, 26879497 - 26879569
Alignment:
Q  324 tgcatctaggctttgct-ttaagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttac 395  Q
    ||||||||||||||||  || ||| ||||||||||||||| | ||||| |||||||| |||||||||||||||    
T  26879497 tgcatctaggctttgcccttgagtattttgttaggcatctagtctttttccttgaaacttaatagtcacttac 26879569  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 27813556 - 27813470
Alignment:
Q  64 gtaaaggtaccctttctgtttgcattgataatgttatgtattctagttttagattgtttggctgttagtagcatattttgatcaattt 151  Q
    ||||||||| |||||||||||||||||||||| ||   || ||| |||||||||||||| | ||||||| ||| |||||||| |||||    
T  27813556 gtaaaggtatcctttctgtttgcattgataatattgcatactctggttttagattgttt-gttgttagtcgcagattttgattaattt 27813470  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 26575323 - 26575248
Alignment:
Q  324 tgcatctaggctttgctttaagttttttgttaggcatctggccttttgccttgaaatttaatagtcacttactcactt 401  Q
    ||||||||| |||||||||| || ||||||||||||||| | | ||||  |||||| |||||||||||||||||||||    
T  26575323 tgcatctagactttgctttatgtattttgttaggcatctagtc-tttggtttgaaa-ttaatagtcacttactcactt 26575248  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 477
Target Start/End: Complemental strand, 18437733 - 18437638
Alignment:
Q  384 atagtcacttactcacttatgaacaagtattttgt-agacatgtaggatttg-ctttaagtatttttactcggttttttatcattattatgactac 477  Q
    |||| ||||| ||||||||||| |||||||||||| | |||| ||||||||| |||||||||||||   | |||| |||| |||||| ||||||||    
T  18437733 atagccactttctcacttatgatcaagtattttgtcaaacatctaggatttgtctttaagtattttgtttaggttgtttaacattatcatgactac 18437638  T

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Target: scaffold0526 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 447
Target Start/End: Original strand, 8120 - 8199
Alignment:
Q  368 tttgccttgaaatttaatagtcacttactcacttatgaacaagtattttgt-agacatgtagga-tttgctttaagtatttt 447  Q
    |||||||||||| ||||||| |  |||||||||| ||| |||||||||||| |||||| ||||| ||| |||||||||||||    
T  8120 tttgccttgaaacttaatagcc--ttactcacttgtgatcaagtattttgtcagacatttaggattttcctttaagtatttt 8199  T

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