View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1278-2A-Insertion-18 (Length: 334)
Name: NF1278-2A-Insertion-18
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1278-2A-Insertion-18 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 46 - 334
Target Start/End: Complemental strand, 43390065 - 43389777
Alignment:
| Q |
46 |
taaaataataaagaaaattagtctcaagagcagtggaacatgtctgatcaacaggaaaccaaattaaactaaacttgattattattattatgccggcaat |
145 |
Q |
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| T |
43390065 |
taaaataataaagaaaattagtctcaagagcagtggaacatgtctgatcaacaggaaaccaaattaaactaaacttgattattattattatgccggcaat |
43389966 |
T |
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| Q |
146 |
cagtgttaccggatctgcttaagtaataatgctcgtacaaatacaaatacaaatatgcatggttatgagataggcaatcgtaatgttttagattctcaca |
245 |
Q |
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| T |
43389965 |
cagtgttaacggatctgcttaagtaataatgctcgtacaaatacaaatacaaatatgcatggttatgagataggcaatcgtaatgttttagattctcaca |
43389866 |
T |
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| Q |
246 |
ttaaatcatagatacagttttgctatgtttaagatttccgtatcttatatagggatgtgttactcaaaaatcatcttcaattttttcta |
334 |
Q |
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| T |
43389865 |
ttaaatcatagatacagttttgctatgtttaagatttccgtatcttatatagggatgtgttactcaaaaatcatcttcaactttttcta |
43389777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 43390089 - 43390061
Alignment:
| Q |
8 |
caaattcccctcatatcttaatcctaaaa |
36 |
Q |
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| T |
43390089 |
caaattcccctcatatcttaatcctaaaa |
43390061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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