View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1278-2A-Insertion-19 (Length: 280)

Name: NF1278-2A-Insertion-19
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1278-2A-Insertion-19
NF1278-2A-Insertion-19
[»] chr4 (1 HSPs)
chr4 (8-280)||(33886128-33886396)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 33886396 - 33886128
Alignment:
Q  8 cagtgcttgtttcctgtacaat-aataaggcaattaatcatctaatatagataggttctttgttagagtgatctgatctatttacattattcattatcat 106  Q
    |||||||||||||||||||||| ||||||| |||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33886396 cagtgcttgtttcctgtacaattaataagggaattaatcatcta-----gataggttctttgttagagtgatctgatctatttacattattcattatcat 33886302  T
Q  107 tggaacttatattgatacaacttcaattgctatttggtactagtttagtagtagtagtaattttatatgaaaagtatcttttgttgtaacttccttttta 206  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33886301 tggaaattatattgatacaacttcaattgctatttggtactagtttagtagtagtagtaattttatatgaaaagtatcttttgttgtaacttccttttta 33886202  T
Q  207 gtgcacgtttcctttttggctttccgcagcttcaattatctttatttatttatgtatggaatagaattttacct 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33886201 gtgcacgtttcctttttggctttccgcagcttcaattatctttatttatttatgtatggaatagaattttacct 33886128  T

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