View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1278-2A-Insertion-2 (Length: 201)
Name: NF1278-2A-Insertion-2
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1278-2A-Insertion-2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 38645117 - 38644924
Alignment:
| Q |
8 |
gtttagttgatcttttgctgatgggagctgaagtcgttgaatcacagaatatgactctttagctaaccattttgtttcaagctgcatagttgagttgcag |
107 |
Q |
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| T |
38645117 |
gtttagttgatcttttgctgatgggagctgaagtcgttgaatcacagaatatgactctttagctaaccattttgtttcaagctgcatagttgagttgcag |
38645018 |
T |
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| Q |
108 |
ccatttcaaccaattcatactcagggatcatggtcatacttttagacttcatcaatctaaatcaactgatgtaatatctaatgaatcttcatat |
201 |
Q |
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| T |
38645017 |
ccatttcaaccaattcatactcagggatcatggtcatacttttagacttcatcaatctaaatcaactgatgtaatatctaatgaatcttcatat |
38644924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 63 - 201
Target Start/End: Original strand, 38656935 - 38657078
Alignment:
| Q |
63 |
tctttagctaaccattttgtttcaagctgcatagttgagt-----tgcagccatttcaaccaattcatactcagggatcatggtcatacttttagacttc |
157 |
Q |
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| T |
38656935 |
tctttggctaaccactttgtttcaaactgcatagttgagccatactgcagccatttcaaccaattc-tactcagagatcatgatcatacttctagacttc |
38657033 |
T |
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| Q |
158 |
atcaatctaaatcaactgatgtaat-atctaatgaatcttcatat |
201 |
Q |
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| T |
38657034 |
atcaatctaaatctactgatataataatctaatgattcatcatat |
38657078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 38899386 - 38899445
Alignment:
| Q |
7 |
agtttagttgatcttttgctgatgggagctgaagtcgttgaatcacagaatatgactctt |
66 |
Q |
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| T |
38899386 |
agtttagttgatcttttgctgataggagctgaagctgctgaatcacaaaacatgactctt |
38899445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 16805923 - 16805848
Alignment:
| Q |
107 |
gccatttcaaccaattcatactcagggatcatggtcatacttttagacttcatcaatctaaatcaactgatgtaat |
182 |
Q |
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| T |
16805923 |
gccatttcaactaatgcatactaaggaatcattgtaatacatctagccttcatcaatctaaatcaactaatgtaat |
16805848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 23955980 - 23955879
Alignment:
| Q |
101 |
gttgcagccatttcaaccaattcatactcagggatcatggtcatacttttagacttcatcaatctaaatcaactgatgtaat-atctaatgaatcttcat |
199 |
Q |
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||||||||||||| ||||||||||| ||||| ||||| || |||| | ||| ||| ||||| ||||||| | ||||||| | ||||||||| || |||| |
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| T |
23955980 |
gttgcagccatttaaaccaattcatgttcaggaatcattgtgatacatctagccttaatcaacctaaatctattgatgtagtcatctaatgattcgtcat |
23955881 |
T |
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| Q |
200 |
at |
201 |
Q |
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|| |
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| T |
23955880 |
at |
23955879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 22769149 - 22769076
Alignment:
| Q |
119 |
aattcatactcagggatcatggtcatacttttagacttcatcaatctaaatcaactgatgtaat-atctaatga |
191 |
Q |
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| T |
22769149 |
aattcatactcaggaatcattgtcgttgatctagccttcatcaatctaaatctactgatgtaatcatctaatga |
22769076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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