View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1278-2A-Insertion-20 (Length: 396)
Name: NF1278-2A-Insertion-20
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1278-2A-Insertion-20 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 152 - 311
Target Start/End: Complemental strand, 24618577 - 24618418
Alignment:
| Q |
152 |
ctatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttcc |
251 |
Q |
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| T |
24618577 |
ctatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttcc |
24618478 |
T |
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| Q |
252 |
ctgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatca |
311 |
Q |
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| T |
24618477 |
ctgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatca |
24618418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 153 - 311
Target Start/End: Complemental strand, 1344188 - 1344030
Alignment:
| Q |
153 |
tatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccc |
252 |
Q |
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| T |
1344188 |
tatgcaataatttccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccc |
1344089 |
T |
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| Q |
253 |
tgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatca |
311 |
Q |
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| T |
1344088 |
tgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaaccacaagatca |
1344030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 153 - 311
Target Start/End: Original strand, 1355399 - 1355557
Alignment:
| Q |
153 |
tatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccc |
252 |
Q |
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| T |
1355399 |
tatgcaataatttccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccc |
1355498 |
T |
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| Q |
253 |
tgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatca |
311 |
Q |
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| T |
1355499 |
tgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaaccacaagatca |
1355557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 1355250 - 1355349
Alignment:
| Q |
8 |
gtaacctgcaagagtaaaaatataattaatgccaatttatactaatgatttctaatcctgaacaagatttgctaatattgagaagagttttgtccataag |
107 |
Q |
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| T |
1355250 |
gtaacctgcaagagtaaaaatataataaatgtcaacttatactaatgatttctaatcctgaacaagatttgctaatattgagaagagttttgtccataag |
1355349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 1344291 - 1344238
Alignment:
| Q |
54 |
gatttctaatcctgaacaagatttgctaatattgagaagagttttgtccataag |
107 |
Q |
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| T |
1344291 |
gatttctaatcctgaacaagatttgctaatattaagaagagttttgtccataag |
1344238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 308
Target Start/End: Complemental strand, 1361261 - 1361143
Alignment:
| Q |
184 |
ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaat |
283 |
Q |
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| T |
1361261 |
ctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttctttgtcagtcatt------aagtcatgatcaat |
1361168 |
T |
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| Q |
284 |
ctcatcattaaactcaaccacagga |
308 |
Q |
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| T |
1361167 |
ctcatcatcaaactcaaccacagga |
1361143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 1350687 - 1350615
Alignment:
| Q |
184 |
ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtc |
256 |
Q |
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| T |
1350687 |
ctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc |
1350615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 1361329 - 1361280
Alignment:
| Q |
71 |
aagatttgctaata----ttgagaagagttttgtccataaggttactcat |
116 |
Q |
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| T |
1361329 |
aagatttgctaataattgttgagaagagttttatccataaggttactcat |
1361280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 43364468 - 43364537
Alignment:
| Q |
222 |
tttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaatctcatcat |
291 |
Q |
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| T |
43364468 |
tttaatctgcgggcaaattcttccacttccctatcaattcttgcttgtaaggccggatcaatctcatcat |
43364537 |
T |
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