View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1278-2A-Insertion-24 (Length: 589)
Name: NF1278-2A-Insertion-24
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1278-2A-Insertion-24 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 255 - 589
Target Start/End: Complemental strand, 54039809 - 54039474
Alignment:
| Q |
255 |
ctggatgctagtgctgctgggctaaaagttgatcacctttttaatgtgcacttgtttcttgtagtagcatttccaaacttgaattctctttgctttgcaa |
354 |
Q |
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| T |
54039809 |
ctggatgctagtgctgctgggctaaaagttgatcacctttttaatgtgcacttgtttcttgtagtagcatttccaaacttgaattctctttgctttgcaa |
54039710 |
T |
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| Q |
355 |
cattggtggtatctaatggtcaaaatttaatattcttccttcaagaacattaacatataagaatctttttgcatgagattcttctcttacataactgagt |
454 |
Q |
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| T |
54039709 |
tattggtggtatctaatggtcaaaatttaatattcttccttcaagaacattaacatataagaatctttttgcatgagattcttctagtacataactgagt |
54039610 |
T |
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| Q |
455 |
gcactgactgcttacaattgaatttctttatgacatatactggtacgt-ataatgttatgtcatgttaatcacttatttctttatggtgtttcctgtttt |
553 |
Q |
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| T |
54039609 |
gcactgactgcttacaattgaatttctttatgacatatactggtacttaatagtgttatgtcatgttaattacttatttctttatggtgtttcctgtttt |
54039510 |
T |
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| Q |
554 |
gagttcaatgtttttcttatgctcaacttgtacatg |
589 |
Q |
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| T |
54039509 |
aagttcaatgtttttcttatgctcaacttgtacatg |
54039474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 54040052 - 54039875
Alignment:
| Q |
8 |
tgtaaaggattaaataaattaaatttaaaagatagtaatattttataacttttttctgattttgtcaaggttctttctgaaaagtggacttttaaattgg |
107 |
Q |
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| T |
54040052 |
tgtataggattaaataaattaaatttaaaagata---atattttataacttttttctgattttgtcaaggttctttctgaaaagtggacttttaaattgg |
54039956 |
T |
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| Q |
108 |
atatttctgggtagtcatggttcttactgaaaaagtgtggacttttaaactgagattgcttttcatcttaaaagtgttctta |
189 |
Q |
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| T |
54039955 |
atatt-ctgggtagtcatggttcttactgaaaaagtgtggacttctaaactgagattgcttttcatcttaaaagtgttctta |
54039875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 54040144 - 54040097
Alignment:
| Q |
61 |
ttctgattttgtcaaggttctttctgaaaagtggacttttaaattggatat |
111 |
Q |
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| T |
54040144 |
ttctgattttgtc---gttgtttctgaaaagtggacttttaaattggatat |
54040097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 41121679 - 41121717
Alignment:
| Q |
298 |
atgtgcacttgtttcttgtagtagcatttccaaacttga |
336 |
Q |
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| T |
41121679 |
atgtgcacttgtttaatgtagtagcatttccaaacttga |
41121717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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