View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1278-2A-Insertion-3 (Length: 597)
Name: NF1278-2A-Insertion-3
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1278-2A-Insertion-3 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 7 - 524
Target Start/End: Complemental strand, 952417 - 951896
Alignment:
| Q |
7 |
aatatttgcattccttctactcatttggtttacactttctcttaatttattattgtacatgtttcaattttgttatgcatcttattattttgttgggtta |
106 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
952417 |
aatatttacattccttcttctcatttggtttacactttctcctaatttattattgtacatgtttcaattttgttctgcatctgattatttttttgggtta |
952318 |
T |
|
| Q |
107 |
nnnnnnnnattaaagtggtgattatt---ttgtcttt-aaggttcagattcaaaaaattggaaaaatcaacggaggttaggatttgtgagtttgatatgt |
202 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
952317 |
ttttttttattaaagtggtgattattattttgtctttcaaggttaagattcaaaaaattggaaaaatcaacggaggttaggatttttgagtttgatatgt |
952218 |
T |
|
| Q |
203 |
aattttgtgtttgataatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
952217 |
aattttgtgtttgataatatatggaggaattgatagagatatctgataaaggaaattacaagggcaattagagactctttttctatgttgtgattgttgc |
952118 |
T |
|
| Q |
303 |
tacttcctcttccgatgttggcatcaccgcccttgctaccattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatga |
402 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||||| ||||||||||||| |
|
|
| T |
952117 |
tacttcctcttccgatgttggcaccaccgcccttgctgccattatcaatctctccaattcatccagccgtgacagatatatctagcagcgaaaattatga |
952018 |
T |
|
| Q |
403 |
ttcaactttgattaattttgaacttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctgaaa |
502 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
952017 |
ttcaactttgattaattttgaacttaaatctaataaaaaacattatactttgtggaaggtgttatttctctttcaatttgtttctataactatgctgaaa |
951918 |
T |
|
| Q |
503 |
aacattttgaatattacttttc |
524 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
951917 |
aacattttgaatattacttttc |
951896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 125 - 556
Target Start/End: Complemental strand, 14174936 - 14174504
Alignment:
| Q |
125 |
tgattattttgtcttt-aaggttcagattcaaaaaattggaaaaatcaacggaggttaggatttgtgagtttgatatgtaattttgtgtttgataatata |
223 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174936 |
tgattattttgtctttcaaggttcagattcaaaaaattgtaaaaatcaacggaggttaggatttgtgagtttgatatgtaattttgtgtttgataatata |
14174837 |
T |
|
| Q |
224 |
tggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctacttcctcttccgatgttgg |
323 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14174836 |
tggacgaattgatagacatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctatttcctcttccgatgttgg |
14174737 |
T |
|
| Q |
324 |
catcaccgcccttgctaccattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgattaattttga |
423 |
Q |
| |
|
|||||||||||| | | |||||||| |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14174736 |
catcaccgccctagatgccattatctatctctccaattcatccagccgtgacaggtatatctagcagcgaaaattatgattcaactttgattaattttga |
14174637 |
T |
|
| Q |
424 |
acttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctgaaaaacattttgaatattactttt |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174636 |
acttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatctatttctataactatgctgaaaaacattttgaatattactttt |
14174537 |
T |
|
| Q |
524 |
cttcattcaaatgggaatcctttatatcttttg |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
14174536 |
cttcattcaaatgggaatcctttatatcttttg |
14174504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 9462178 - 9462240
Alignment:
| Q |
351 |
tctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttga |
413 |
Q |
| |
|
|||||||||||||||| | || ||| |||||||| || |||||||||||||||||| ||||| |
|
|
| T |
9462178 |
tctctccaattcatccgaccgtgacatgtatatctggcagcgaaaattatgattcaattttga |
9462240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 14174973 - 14174936
Alignment:
| Q |
7 |
aatatttgcattccttctactcatttggtttacacttt |
44 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
14174973 |
aatatttacattccttcttctcatttggtttacacttt |
14174936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 7 - 556
Target Start/End: Original strand, 40723069 - 40723606
Alignment:
| Q |
7 |
aatatttgcattccttctactcatttggtttacactttctcttaatttattattgtacatgtttcaattttgttatgcatcttattattttgttgggtta |
106 |
Q |
| |
|
||||||| |||||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||||||| || ||||| | |||||||| |||||||| |
|
|
| T |
40723069 |
aatatttacattccttcttctcattcggtttacacgttctcctaatttattattgtacatgtttcaattttattctgcatttgattatttttttgggtta |
40723168 |
T |
|
| Q |
107 |
nnnnnnnnattaaagtggtgattattttgtcttt-aaggttcagattcaaaaaattggaaaaatcaacggaggttaggatttgtgagtttgatatgtaat |
205 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40723169 |
ttttttttattaaagtggtgattattttgtctttcaaggttcagattaaaaaaattggaaaaatcaacggaggttaggatttgtgagtttgatatgtaat |
40723268 |
T |
|
| Q |
206 |
tttgtgtttgataatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctac |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40723269 |
tttgtgtttgataatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctac |
40723368 |
T |
|
| Q |
306 |
ttcctcttccgatgttggcatcaccgcccttgctaccattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||| || || |||||||||||||||||||||||||||||||| |
|
|
| T |
40723369 |
ttcctcttccgatgttggcatcaccgcccttgttgccattatcaatctctccaatttatccggccgtgacaggtatatctagccgcgaaaattatgattc |
40723468 |
T |
|
| Q |
406 |
aactttgattaattttgaacttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctg--aaaa |
503 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
40723469 |
aact--------------acttaagtctgttaaaaaacattatactttgtggaa-gtgttatttctctttcaatctgtttctataactatgctgaaaaaa |
40723553 |
T |
|
| Q |
504 |
acattttgaatattacttttcttcattcaaatgggaatcctttatatcttttg |
556 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
40723554 |
acattttgaatattacttttcttcattaaaatggaaatcctttatatcttttg |
40723606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 33288260 - 33288196
Alignment:
| Q |
351 |
tctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattcaactttgatt |
415 |
Q |
| |
|
|||||||||||||||| | || ||||||||||| | | || ||||||||||||||| ||||||| |
|
|
| T |
33288260 |
tctctccaattcatccgaccgtgacaggtatatccaccagccaaaattatgattcaattttgatt |
33288196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 8 - 556
Target Start/End: Original strand, 258036 - 258560
Alignment:
| Q |
8 |
atatttgcattccttctactcatttggtttacactttctcttaatttattattgtacatgtttcaattttgttatgcatcttattattttgttgggttan |
107 |
Q |
| |
|
|||||| |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||| |||||||| || |
|
|
| T |
258036 |
atatttacattccttcttctcatttagtttacactttctcctaatttattattgtacatgtttcaattttattctgcatctgattattttttt------- |
258128 |
T |
|
| Q |
108 |
nnnnnnnattaaagtggtgat--tattttgtcttt-aaggttcagattcaaaaaattggaaaaatcaacggaggttaggatttgtgagtttgatatgtaa |
204 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
258129 |
------tattaaagtggtgatattatttcgtctttcaaggttcagattaaaaaatttggaaaaatcaacggaggttaggatttatgagtttgatatgtaa |
258222 |
T |
|
| Q |
205 |
ttttgtgtttgataatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgcta |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
258223 |
ttttgtgtttgataatatatggaggaattgatagagatatctgagaaaggaagttacaagggaaattagagactctttttctttgttgtgactgttgcta |
258322 |
T |
|
| Q |
305 |
cttcctcttccgatgttggcatcaccgcccttgctaccattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgatt |
404 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |
|
|
| T |
258323 |
cttcctcttccgatgttggcatcaccgcctttgctgccattatcaatctctccaattcatccagccatgacaggtatatctagcagcgaaaattatgatt |
258422 |
T |
|
| Q |
405 |
caactttgattaattttgaacttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatatgtttctataactatgctgaaaaa |
504 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
258423 |
caact--------------acttaagtctgttcaaaaacattatactttgtggaaggtgttatttctctttcaatctgtttttataactatgctgaaaaa |
258508 |
T |
|
| Q |
505 |
cattttgaatattacttttcttcattcaaatgggaatcctttatatcttttg |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
258509 |
cattttgaatattacttttcttcattcaaatgggaatcctttatatcttttg |
258560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 414
Target Start/End: Complemental strand, 10714938 - 10714542
Alignment:
| Q |
7 |
aatatttgcattccttctactcatttggtttacactttctcttaatttattattgtacatgtttcaattttgttatgcatcttattattttgttgggtta |
106 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| || ||| |
|
|
| T |
10714938 |
aatatttacattcctttttctcatttggtttacactttctcctaatttattattgtacatgtttcaattttgttctgcatctgattattttttt---tta |
10714842 |
T |
|
| Q |
107 |
nnnnnnnnattaaagtggtgattattttgtcttt-aaggttcagattcaaaaaattggaaaaatcaacggaggttaggatttgtgagtttgatatgtaat |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10714841 |
---------ttaaagtggtgattattttgtctttcaaggttcatattcaaaaaattggaaaaatcaatggaggttaggatttgtgagtttgatatgtaat |
10714751 |
T |
|
| Q |
206 |
tttgtgtttgataatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctac |
305 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10714750 |
tttggttttgataatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctac |
10714651 |
T |
|
| Q |
306 |
ttcctcttccgatgttggcatcaccgcccttgctaccattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattc |
405 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||| |
|
|
| T |
10714650 |
ttcctcttccgatgttggcatcaccacccttgctgccattatcaatctctccaattcatccagccgtgacaggtatatctagcagcgaaaattatgattc |
10714551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 414
Target Start/End: Complemental strand, 10928708 - 10928312
Alignment:
| Q |
7 |
aatatttgcattccttctactcatttggtttacactttctcttaatttattattgtacatgtttcaattttgttatgcatcttattattttgttgggtta |
106 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| || ||| |
|
|
| T |
10928708 |
aatatttacattcctttttctcatttggtttacactttctcctaatttattattgtacatgtttcaattttgttctgcatctgattattttttt---tta |
10928612 |
T |
|
| Q |
107 |
nnnnnnnnattaaagtggtgattattttgtcttt-aaggttcagattcaaaaaattggaaaaatcaacggaggttaggatttgtgagtttgatatgtaat |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10928611 |
---------ttaaagtggtgattattttgtctttcaaggttcatattcaaaaaattggaaaaatcaatggaggttaggatttgtgagtttgatatgtaat |
10928521 |
T |
|
| Q |
206 |
tttgtgtttgataatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctac |
305 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10928520 |
tttggttttgataatatatggaggaattgatagagatatctgagaaaggaagttacaagggcaattagagactctttttctttgttgtgattgttgctac |
10928421 |
T |
|
| Q |
306 |
ttcctcttccgatgttggcatcaccgcccttgctaccattatcaatctctccaattcatccagctgtcacaggtatatctagccgcgaaaattatgattc |
405 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||| |
|
|
| T |
10928420 |
ttcctcttccgatgttggcatcaccacccttgctgccattatcaatctctccaattcatccagccgtgacaggtatatctagcagcgaaaattatgattc |
10928321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 195 - 337
Target Start/End: Original strand, 8921988 - 8922131
Alignment:
| Q |
195 |
tgatatgtaattttgtgtttgataatatatggaggaattgatagagatatctgagaaaggaagttaca-agggcaattagagactctttttctttgttgt |
293 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||| |||||| ||| |||||||| ||||| |
|
|
| T |
8921988 |
tgatatgtaatt--gtgtttgataatatgtggaggaatggatagagatatctgagataggaagttacagagggcgattagacactgtttttcttcgttgt |
8922085 |
T |
|
| Q |
294 |
gattgt--tgctacttcctcttccgatgttggcatcaccgcccttg |
337 |
Q |
| |
|
| |||| |||||||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
8922086 |
gtttgtgctgctactttctcttccgatgttcgcatcgccgcccttg |
8922131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 51386557 - 51386496
Alignment:
| Q |
143 |
ggttcagattcaaaaaattggaaaaatcaacggaggttaggatttgtgagtttgatatgtaa |
204 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
51386557 |
ggttcagattcaaaaaattggacaaatcaacagaggttaggataagagagtttgatatgtaa |
51386496 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 51386644 - 51386612
Alignment:
| Q |
48 |
ttaatttattattgtacatgtttcaattttgtt |
80 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
51386644 |
ttaatttattactgtacatgtttcaattttgtt |
51386612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 547
Target Start/End: Complemental strand, 2193581 - 2193526
Alignment:
| Q |
492 |
ctatgctgaaaaacattttgaatattacttttcttcattcaaatgggaatccttta |
547 |
Q |
| |
|
|||||| |||||||||||||||| ||||| ||||||||||||| |||||||||| |
|
|
| T |
2193581 |
ctatgcagaaaaacattttgaattctacttctcttcattcaaatatgaatccttta |
2193526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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