View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1278-2A-Insertion-5 (Length: 799)
Name: NF1278-2A-Insertion-5
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1278-2A-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0624 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 752; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 752; E-Value: 0
Query Start/End: Original strand, 8 - 799
Target Start/End: Original strand, 22722786 - 22723578
Alignment:
| Q |
8 |
ctctcaaggtatgattaaagaagaccacccaaaaatgagaagtgaacttcctaatgagagaaaataagctgtatgggacgaaagttattttgattagtgt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22722786 |
ctctcaaggtatgattaaagaagaccacccaaaaatgagaagtgaacttcctaatgagagaaaataagctgtatgggacgaaagttattttgattagtgt |
22722885 |
T |
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| Q |
108 |
gatcaacaattaaatccagttgacgacctctcaaaaatagatcaaagttcagccaataaattagaagctcgacaaaatctagaaaaaccataaatccaat |
207 |
Q |
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| T |
22722886 |
gatcaacaattaaatccagttgacgacctctcaaaaatagatcaaagttcagccaataaattagaagctcgacaaaatctagaaaaaccataaatccaat |
22722985 |
T |
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| Q |
208 |
tacatccatcatctttcaaaaggactctacaaccttcattatcacgattaccaaaagaggatccatcttcgtgactttaataaagccttcaggaagtgga |
307 |
Q |
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| T |
22722986 |
tacatccatcatctttcaaaaggactctacaaccttcattatcacgattaccaaaagaggatccatcttcgtgactttaataaagccttcaggaagtgga |
22723085 |
T |
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| Q |
308 |
tgccagcaaacatgacgaattacatgatgtttatttaaaagcaagggcatcaaccatggaggaatgattgatattccattatctctcagatattattaat |
407 |
Q |
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| T |
22723086 |
tgccagcaaacatgacgaattacatgatgtttatttgaaagcaagggcatcaaccatggaggaatgattgatattccattatctctcagatattattaat |
22723185 |
T |
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| Q |
408 |
ctattatgataagttatttctgatccactgatactatcatatattagaatcaagaagggattaaaatcttagtgcggacaattgtccatacattggtata |
507 |
Q |
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| T |
22723186 |
ctattatgataagttatttctgatccactgatactatcatatattagaatcaagaagggattaaaatcttagtgcggacaattgtccatacattggtata |
22723285 |
T |
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| Q |
508 |
ggtaactcgtccctatatatagacacacaccaaagctagaactactcaactctaaagctggttgtatacacatggtattgctgtcatataagaagttaga |
607 |
Q |
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| T |
22723286 |
ggtaactcgtccctatatatagacacacaccaaagctagaactactcaactctaaagctggttgtatacacatggtattgctgtcatataagaagttaga |
22723385 |
T |
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| Q |
608 |
agggtgtaaagatgtcatacttatccatgctagcnnnnnnncttacagtgattagtctcaacaatattacaggaaatccaaagcatcaaatacatgcgta |
707 |
Q |
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| T |
22723386 |
agggtgtaaagatgtcatacttatccatgctagctttttttcttacagtggttagtctcaacaatattacaggaaatccaaagcatcaaatacatgcgta |
22723485 |
T |
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| Q |
708 |
atttaagatgtaccccaatcctgctcattaactagtctcgtttgtatatttggtttgcgggtgcttatagtctc-ttttggtaaattgacttt |
799 |
Q |
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| T |
22723486 |
atttaagatgtaccccaatcctgctaattaactagtctcgtttgtatatttggtttgcgggtgcttatagtctctttttggtaaattgacttt |
22723578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0624 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: scaffold0624
Description:
Target: scaffold0624; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 388 - 544
Target Start/End: Original strand, 3578 - 3738
Alignment:
| Q |
388 |
atctctcagatattattaatctattatgataagttatttctgatccactgatactatcat---atattagaatcaagaagg-gattaaaatcttagtgcg |
483 |
Q |
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|||||||||||||||| ||||||||| |||||||||||| | ||||||| || ||||||| ||||||||||| | |||| |||||||||||||||| | |
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| T |
3578 |
atctctcagatattataaatctattaggataagttatttgtaatccactaattctatcatcatatattagaatctataaggagattaaaatcttagtggg |
3677 |
T |
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| Q |
484 |
gacaattgtccatacattggtataggtaactcgtccctatatatagacacacaccaaagct |
544 |
Q |
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| T |
3678 |
aatagttgttcatacaatggtataggtatctcgtccctatataacgacacacaccaaagct |
3738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0624; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 616 - 705
Target Start/End: Original strand, 3769 - 3858
Alignment:
| Q |
616 |
aagatgtcatacttatccatgctagcnnnnnnncttacagtgattagtctcaacaatattacaggaaatccaaagcatcaaatacatgcg |
705 |
Q |
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|||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3769 |
aagatgtcttacttatccatgctagctttttttcttacagtaatcagtctcaacaatattacaggaaatccaaagcatcaaatacatgcg |
3858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0624; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 734 - 785
Target Start/End: Original strand, 4289 - 4340
Alignment:
| Q |
734 |
attaactagtctcgtttgtatatttggtttgcgggtgcttatagtctctttt |
785 |
Q |
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| T |
4289 |
attaagtagtcccgtttgtatatttggtttgcgggtgcttatagtctctttt |
4340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 4415055 - 4415118
Alignment:
| Q |
8 |
ctctcaaggtatgattaaagaagaccacccaaaaatgagaagtgaacttcctaatgagagaaaa |
71 |
Q |
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||||||| |||||||||||| |||||||||||| | ||||| || |||||||||||||||||| |
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| T |
4415055 |
ctctcaaagtatgattaaaggagaccacccaaagaaaagaagagagcttcctaatgagagaaaa |
4415118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 39404581 - 39404622
Alignment:
| Q |
189 |
gaaaaaccataaatccaattacatccatcatctttcaaaagg |
230 |
Q |
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|||||||||||||||||||||| |||||||| | |||||||| |
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| T |
39404581 |
gaaaaaccataaatccaattacctccatcatttctcaaaagg |
39404622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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