View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1278-2A-Insertion-6 (Length: 804)
Name: NF1278-2A-Insertion-6
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1278-2A-Insertion-6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 396 - 804
Target Start/End: Original strand, 5717715 - 5718123
Alignment:
| Q |
396 |
atgtcaactagtatatttagtgtatatttggttctgcggtaataaaagttgattttaattgaatgtaacgtgaatgcgaagtggaaaaacaatagtgaga |
495 |
Q |
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| T |
5717715 |
atgtcaactagtatatttagtgtatatttggttctgcggtaataaaagttcattttaattgaacgtaacgtgaatgcgaagtggaaaaacaacagtgaga |
5717814 |
T |
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| Q |
496 |
ctgtgattttgttgaagctttaaaatgtaacttctattaaaatcgcggtagttcattttgattccatcaatctcactgcaaatccaatcatgacaaatta |
595 |
Q |
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| T |
5717815 |
ctgtgattttgttgaagctttaaaatgtaacttttatcaaaatcgcggcagttcattttgattccatcaatctcactacaaatccaatcatgacaaatta |
5717914 |
T |
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| Q |
596 |
tagaagtatataatgattgaactcaacattgtttgttattgcagcagttaactttttcttaaattacttgatattataattttggaatttcacactttat |
695 |
Q |
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| T |
5717915 |
tagaagtatataatgattgaactcaacattgtttgttattgcagcagttaactttttcttaaattacttgatattataattttggaatttcacactttat |
5718014 |
T |
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| Q |
696 |
gatttgcaggatgcttttactataatgtttttgttttaccttaatttaatgtttctttctacctatgattatgccttaatggatcacctgacattctctt |
795 |
Q |
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| T |
5718015 |
gatttgcagcatatttttactataatgtttttgttttaccttaatttagtgtttctttctacctatgattatgccttaatggatcacctgacattctctt |
5718114 |
T |
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| Q |
796 |
tgcggttgt |
804 |
Q |
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| T |
5718115 |
tgcagttgt |
5718123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 325
Target Start/End: Original strand, 5717344 - 5717660
Alignment:
| Q |
9 |
ttctattgtttttatatgaatgtgtgtgaccatttaatttatgatttcattgattccttttaggtcatgtgtaccctcatgtttttatgtcacttataca |
108 |
Q |
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| T |
5717344 |
ttctattgtttttatatgaatgtgtgtgaccatttaatttatgatttcattgattccttttaggtcatgtgtaccctcatgtttttatgtcacttataca |
5717443 |
T |
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| Q |
109 |
gcctaaaacttgctattgctttgctgtttacatttgtgtcccatatttacaaagttgtcactgcaacaacaatgcttttattgcttctagttgtcatttg |
208 |
Q |
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| T |
5717444 |
gcctaaaacttgctattgctttgctgtttacatttgtgtcccatatttacaaagttgtcactgcaacaacaatgcttttattgattctagttgtcatttg |
5717543 |
T |
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| Q |
209 |
ttttaaaccttaccttctttccagcaaagcataccccattcgtgcttcatagctattttggcagcaaacacgtgcatccacaatatcattattaccatgt |
308 |
Q |
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| T |
5717544 |
tgttaaaccttaccttctttccagcaaagcataccccattcgtgcttcatagctattttggcagcaaacacgtgcatccacaatatcattattaccatgt |
5717643 |
T |
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| Q |
309 |
tcttcaaacaaaaatca |
325 |
Q |
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| T |
5717644 |
tcttcatacaaaaatca |
5717660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 495 - 528
Target Start/End: Complemental strand, 23955569 - 23955536
Alignment:
| Q |
495 |
actgtgattttgttgaagctttaaaatgtaactt |
528 |
Q |
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| T |
23955569 |
actgtgattttgttgaagctttaaaatgtaactt |
23955536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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