View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1278-2A-Insertion-7 (Length: 618)
Name: NF1278-2A-Insertion-7
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1278-2A-Insertion-7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 8 - 618
Target Start/End: Original strand, 45975751 - 45976364
Alignment:
| Q |
8 |
ctatggaggtggtgcttgtcgataggcaagaagattctcgcttgaagctacttcatgataaagctcaggagttgtatcgttcttcggagaacaccttggt |
107 |
Q |
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| T |
45975751 |
ctatggaggtggtgcttgtcgataggcaagaagattctcgcttgaagctacttcatgataaagctcaggagttgtatcgttcttcagagaacaccttggt |
45975850 |
T |
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| Q |
108 |
gtttgttgaacaactgggaaaacttgttgccataaatatggggtatatatagtagtattcttcaatataatc---acttttttccttattatgttgttgc |
204 |
Q |
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| T |
45975851 |
gtttgttgaacaactgggaaaacttgttgccataaatatggggtatatatagtagtattcttcaatataatcttcacttttttccttattatgttgttgc |
45975950 |
T |
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| Q |
205 |
tattctgagtgtgtatattattgaaggggtatattcccggtggagcgaggagatctccacaaacagtggaagttggttagtaagaggttgaggaattttc |
304 |
Q |
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| T |
45975951 |
tattctgagtgtgtatattattgaaggggtatattcccggtggagcgaggagatctccacaaacagtggaagttggttagtaagaggttgaggaattttc |
45976050 |
T |
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| Q |
305 |
acaagtgtgttgtacttcccattggtggtctatcttctggtctttgtaggcatcgagcgattctcttcaaggtttaagtattgtactgtattggtgtgtt |
404 |
Q |
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| T |
45976051 |
acaagtgtgttgtacttcccattggtggtctatcttctggtctttgtaggcatcgagcgattctcttcaaggtttaagtattgtactgtattggtgtgtt |
45976150 |
T |
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| Q |
405 |
aatttactgagatagctttgtggtgtgtgtagataattaatatgcctgctagtagcatatcaattatcataccaaattttctattttattagtcgcacaa |
504 |
Q |
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| T |
45976151 |
aatttactgagatagctttgtggtgtgtgtagataattgatatgcctgctagtagcatatcaattatcataccaaattttctattttattagtcgcacaa |
45976250 |
T |
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| Q |
505 |
ggacgttagtaactatgcacaggatttgcctgagttcattttgcactgagttttgatgatgcattaatgtttgttgaaaaacttgttacatattttttat |
604 |
Q |
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| T |
45976251 |
ggacgttagtaactatgcacaggatttgcctgagttcattttgcactgagttttgatgatgcattaatgtttgttgaaaaacttgttacatattttttat |
45976350 |
T |
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| Q |
605 |
tcactgcttaatta |
618 |
Q |
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| T |
45976351 |
tcactgcttaatta |
45976364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 238 - 377
Target Start/End: Complemental strand, 28052450 - 28052311
Alignment:
| Q |
238 |
ttcccggtggagcgaggagatctccacaaacagtggaagttggttagtaagaggttgaggaattttcacaagtgtgttgtacttcccattggtggtctat |
337 |
Q |
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| T |
28052450 |
ttccctgtggagcaaggagatctgcaaaaaaggtggaagatggttagtaagcggttgaggaattttcatcagtgtgttgtgcttccagttggtaatttgt |
28052351 |
T |
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| Q |
338 |
cttctggtctttgtaggcatcgagcgattctcttcaaggt |
377 |
Q |
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| T |
28052350 |
ccacgggactctgtaggcatcgcgcaattctcttcaaggt |
28052311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 28052763 - 28052682
Alignment:
| Q |
56 |
tacttcatgataaagctcaggagttgtatcgttcttcggagaacaccttggtgtttgttgaacaactgggaaaacttgttgc |
137 |
Q |
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| T |
28052763 |
tacttcaagataaagctcaagagttgtattctgcttctgagaatgccttggtgctcgttgaaaagcttggaaaacttgttgc |
28052682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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