View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1278-2A-Insertion-8 (Length: 844)

Name: NF1278-2A-Insertion-8
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1278-2A-Insertion-8
NF1278-2A-Insertion-8
[»] chr5 (5 HSPs)
chr5 (433-844)||(657044-657456)
chr5 (4-370)||(656615-656981)
chr5 (188-247)||(12842972-12843031)
chr5 (193-247)||(37022666-37022720)
chr5 (196-247)||(24092098-24092149)
[»] chr3 (11 HSPs)
chr3 (256-348)||(5378234-5378326)
chr3 (256-348)||(5383570-5383662)
chr3 (192-247)||(4100097-4100152)
chr3 (192-247)||(5383349-5383404)
chr3 (192-247)||(6806583-6806638)
chr3 (193-247)||(5378014-5378068)
chr3 (193-247)||(13719155-13719209)
chr3 (192-247)||(13723051-13723106)
chr3 (192-247)||(4099737-4099792)
chr3 (193-247)||(2185446-2185500)
chr3 (195-244)||(23619432-23619481)
[»] chr1 (14 HSPs)
chr1 (256-348)||(14471763-14471855)
chr1 (256-348)||(14477126-14477218)
chr1 (256-349)||(39169924-39170017)
chr1 (285-348)||(23194095-23194158)
chr1 (192-247)||(2797004-2797059)
chr1 (192-247)||(14471543-14471598)
chr1 (192-247)||(14476906-14476961)
chr1 (192-247)||(23200390-23200445)
chr1 (193-247)||(2790575-2790629)
chr1 (193-247)||(23202759-23202813)
chr1 (193-247)||(39170182-39170236)
chr1 (196-247)||(42375365-42375416)
chr1 (192-247)||(21010395-21010450)
chr1 (193-246)||(394763-394816)
[»] chr4 (5 HSPs)
chr4 (101-183)||(3896085-3896167)
chr4 (101-181)||(3144996-3145076)
chr4 (193-247)||(14027054-14027108)
chr4 (193-247)||(6746689-6746743)
chr4 (291-348)||(6746944-6747001)
[»] scaffold0015 (2 HSPs)
scaffold0015 (192-247)||(29526-29581)
scaffold0015 (193-247)||(24211-24265)
[»] chr8 (4 HSPs)
chr8 (192-247)||(86508-86563)
chr8 (192-247)||(91825-91880)
chr8 (192-247)||(19802979-19803034)
chr8 (193-247)||(29010782-29010836)
[»] chr7 (5 HSPs)
chr7 (192-247)||(11716628-11716683)
chr7 (193-247)||(13167037-13167091)
chr7 (194-247)||(11711383-11711436)
chr7 (192-247)||(13160581-13160636)
chr7 (291-348)||(30123774-30123831)
[»] chr6 (4 HSPs)
chr6 (192-247)||(16777801-16777856)
chr6 (192-247)||(32703873-32703928)
chr6 (193-247)||(16772466-16772520)
chr6 (193-247)||(32708250-32708304)
[»] chr2 (2 HSPs)
chr2 (193-247)||(20925392-20925446)
chr2 (104-178)||(44046416-44046490)


Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 433 - 844
Target Start/End: Original strand, 657044 - 657456
Alignment:
Q  433 gtaccctaaggactgcattgttaagtcttttatactagatcatcttccactaaaagtaccctaagataaaagtatccactcaccaccaactcccatgaac 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  657044 gtaccctaaggactgcattgttaagtcttttatactagatcatcttccactaaaagtacactaagataaaagtattcaatcaccaccaactcccatgaac 657143  T
Q  533 agagttatgccaaatcactcagtctccagctcaccaacaatttcactgccaatagtaggtccatcctcacccatgacagcatgactctgatacattttgt 632  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  657144 agagttatgccaaatcactcagtctccagctcaccaacaatttcactgccaatagtaggtccatcctcacccatgacaacatgactctgatacatttagt 657243  T
Q  633 ccagctcctttctcttgagctcaatatcttcaatatcttcaaagtggcgattctctaggcatgcattcaacagccaaattgatctcactttcaatttctt 732  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  657244 ccagctcctttctcttgagctcaatatcttcaatatcttcaaagtggcaattctctaggcatgcattcaacagccaaattgatctcactttcaatttctt 657343  T
Q  733 cctttgcattaactgacagctca-gattaattgtttgcttcatgacagtggcatattcaataagctcatttgctgcctccttattcttctggtgtttctc 831  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  657344 cctttgcattaactgacagctcaggattaattgtttgcttcatggcagtggcatattcaataagctcatttgctgcctccttattcttctggtgtttctc 657443  T
Q  832 atcatcagatttg 844  Q
    |||||||||||||    
T  657444 atcatcagatttg 657456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 4 - 370
Target Start/End: Original strand, 656615 - 656981
Alignment:
Q  4 aagaaaatccatgaatgcaataattgaactcaaacttagtatatgctcaaatgagctgaaacttgaaattttctacaactctttcattgattgcaaagta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656615 aagaaaatccatgaatgcaataattgaactcaaacttagtatatgctcaaatgagctgaaacttgaaattttctacaactctttcattgattgcaaagta 656714  T
Q  104 ttaccagggttctattggatggagatccacataatctactctttctgatctttgagcaagctttcgctgatcaaattacatacacaccatggctcagaaa 203  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656715 ttaccagggttctgttggatggagatccacagaatttactctttctgatctttgagcaagctttcgctgatcaaattacatacacaccatggctcagaaa 656814  T
Q  204 ccaggagagaattcactctctaactctcaaatgagaaactcaagnnnnnnnncaatgaggtaagggatgatgtgagtgaccttgagcctatgaatactag 303  Q
    ||| |||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  656815 ccaagagagaatccactctctaactctcaaatgagaaactcaagttttttttcaatgaggtaagggatgatgtaagtgaccttgagcctatgaatactag 656914  T
Q  304 gggtggtgcaattaataggttctatgaatttcttgatctgcatcacaccaacgcatcagtttaatcc 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656915 gggtggtgcaattaataggttctatgaatttcttgatctgcatcacaccaacgcatcagtttaatcc 656981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 12843031 - 12842972
Alignment:
Q  188 caccatggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    |||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  12843031 caccttggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 12842972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 37022666 - 37022720
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||    
T  37022666 tggctaagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 37022720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 24092098 - 24092149
Alignment:
Q  196 ctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  24092098 ctcagaaactaagagagaatccactctctaactctcaaatgagaaactcaag 24092149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 2e-42; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 5378234 - 5378326
Alignment:
Q  256 caatgaggtaagggatgatgtgagtgaccttgagcctatgaatactaggggtggtgcaattaataggttctatgaatttcttgatctgcatca 348  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5378234 caatgaggtaagggatgatgtaagtgaccttgagcctatgaatactaggggtggtgcaattaataggttctatgaatttcttgatctgcatca 5378326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 5383570 - 5383662
Alignment:
Q  256 caatgaggtaagggatgatgtgagtgaccttgagcctatgaatactaggggtggtgcaattaataggttctatgaatttcttgatctgcatca 348  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5383570 caatgaggtaagggatgatgtaagtgaccttgagcttatgaatactaggggtggtgcaattaatagattctatgaatttcttgatctgcatca 5383662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 4100152 - 4100097
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  4100152 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 4100097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 5383349 - 5383404
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  5383349 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 5383404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 6806583 - 6806638
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  6806583 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 6806638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 5378014 - 5378068
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  5378014 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 5378068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 13719155 - 13719209
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  13719155 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 13719209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 13723051 - 13723106
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||    
T  13723051 atggctcagaaaccaagagagaatccactctctaactatcaaatgagaaactcaag 13723106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 4099737 - 4099792
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    |||||||| |||||| |||||||| |||||||||||||||||| ||||||||||||    
T  4099737 atggctcataaaccaagagagaatccactctctaactctcaaaagagaaactcaag 4099792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 2185500 - 2185446
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||| || |||||||| || ||||||||| ||||||||||||||||||    
T  2185500 tggctcagaaatcaagagagaatccattctctaactttcaaatgagaaactcaag 2185446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 23619481 - 23619432
Alignment:
Q  195 gctcagaaaccaggagagaattcactctctaactctcaaatgagaaactc 244  Q
    |||||||||||| |||||||| |||||| | |||||||||||||||||||    
T  23619481 gctcagaaaccaagagagaatccactctattactctcaaatgagaaactc 23619432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 14471763 - 14471855
Alignment:
Q  256 caatgaggtaagggatgatgtgagtgaccttgagcctatgaatactaggggtggtgcaattaataggttctatgaatttcttgatctgcatca 348  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14471763 caatgaggtaagggatgatgtaagtgaccttgagcctatgaatactaggggtggtgcaattaataggttctatgaatttcttgatctgcatca 14471855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 14477126 - 14477218
Alignment:
Q  256 caatgaggtaagggatgatgtgagtgaccttgagcctatgaatactaggggtggtgcaattaataggttctatgaatttcttgatctgcatca 348  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14477126 caatgaggtaagggatgatgtaagtgaccttgagcctatgaatactaggggtggtgcaattaataggttctatgaatttcttgatctgcatca 14477218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 256 - 349
Target Start/End: Complemental strand, 39170017 - 39169924
Alignment:
Q  256 caatgaggtaagggatgatgtgagtgaccttgagcctatgaatactaggggtggtgcaattaataggttctatgaatttcttgatctgcatcac 349  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  39170017 caatgaggtaagggatgatgtaagtgaccttgagcctatgaatactagggggggtgcaattaataggttctacgaatttcttgatctgcatcac 39169924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 285 - 348
Target Start/End: Complemental strand, 23194158 - 23194095
Alignment:
Q  285 ttgagcctatgaatactaggggtggtgcaattaataggttctatgaatttcttgatctgcatca 348  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23194158 ttgagcctataaatactaggggtggtgcaattaataggttctatgaatttcttgatctgcatca 23194095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 2797004 - 2797059
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  2797004 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 2797059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 14471543 - 14471598
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  14471543 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14471598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 14476906 - 14476961
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  14476906 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14476961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 23200445 - 23200390
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  23200445 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 23200390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 2790575 - 2790629
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  2790575 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 2790629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 23202813 - 23202759
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  23202813 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 23202759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 39170236 - 39170182
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  39170236 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 39170182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 42375416 - 42375365
Alignment:
Q  196 ctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  42375416 ctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 42375365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 21010395 - 21010450
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||    
T  21010395 atggctcagaaaccaagagagtatccactctctaactctgaaatgagaaactcaag 21010450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 394763 - 394816
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaa 246  Q
    ||||||||||| || ||||||||||||||| ||| | |||||||||||||||||    
T  394763 tggctcagaaatcaagagagaattcactctgtaattttcaaatgagaaactcaa 394816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 4e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 3896167 - 3896085
Alignment:
Q  101 gtattaccagggttctattggatggagatccacataatctactctttctgatctttgagcaagctttcgctgatcaaattaca 183  Q
    ||||||||| |||||| ||||||| ||||||||| | | |||||||||||||||||| |||||||||||||||||||||||||    
T  3896167 gtattaccatggttctgttggatgtagatccacagactttactctttctgatctttgcgcaagctttcgctgatcaaattaca 3896085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 3144996 - 3145076
Alignment:
Q  101 gtattaccagggttctattggatggagatccacataatctactctttctgatctttgagcaagctttcgctgatcaaatta 181  Q
    ||||||||| |||||| ||||||| ||||||||| | |  ||||||||||||||||| |||||||||||||||||||||||    
T  3144996 gtattaccatggttctgttggatgtagatccacagacttcactctttctgatctttgcgcaagctttcgctgatcaaatta 3145076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 14027108 - 14027054
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  14027108 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14027054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 6746689 - 6746743
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  6746689 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaacgcaag 6746743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 6746944 - 6747001
Alignment:
Q  291 ctatgaatactaggggtggtgcaattaataggttctatgaatttcttgatctgcatca 348  Q
    ||||||||||||||||||||||||||| |||| | | |||||||||||||||| ||||    
T  6746944 ctatgaatactaggggtggtgcaattactaggctgtttgaatttcttgatctgtatca 6747001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 29526 - 29581
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  29526 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 29581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 24211 - 24265
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  24211 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 24265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 86563 - 86508
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  86563 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 86508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 91880 - 91825
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||    
T  91880 atggctcataaaccaagagagaatccactctctaactctcaaatgagaaactcaag 91825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 19803034 - 19802979
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||    
T  19803034 atggctcagaaaccaagagagaatccactctctaactctcaaattagaaactcaag 19802979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 29010782 - 29010836
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||| || |||||||| |||||||||||||||||||||||||||||||    
T  29010782 tggctcagaaatcaagagagaatccactctctaactctcaaatgagaaactcaag 29010836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 11716683 - 11716628
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  11716683 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 11716628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 13167091 - 13167037
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  13167091 tggctcagaaatcaagagagaattcactctctaactctcaaatgagaaactcaag 13167037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 11711436 - 11711383
Alignment:
Q  194 ggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  11711436 ggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 11711383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 13160636 - 13160581
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||| | |||||||| |||||||||||||||| ||||||||||||||    
T  13160636 atggctcagaaacgaagagagaatccactctctaactctcatatgagaaactcaag 13160581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 30123774 - 30123831
Alignment:
Q  291 ctatgaatactaggggtggtgcaattaataggttctatgaatttcttgatctgcatca 348  Q
    ||||||||||||||||||||||||||| |||| | | ||||||| |||||||| ||||    
T  30123774 ctatgaatactaggggtggtgcaattactaggctgtttgaattttttgatctgtatca 30123831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 16777801 - 16777856
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  16777801 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 16777856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 32703928 - 32703873
Alignment:
Q  192 atggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||    
T  32703928 atggctcagaaaccaagagagaatccactctataactctcaaatgagaaactcaag 32703873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 16772466 - 16772520
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||||||||||||    
T  16772466 tggctcagaaaccaatagagaatccactctctaactctcaaatgagaaactcaag 16772520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 32708304 - 32708250
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  32708304 tggctcagaaactaagagagaatccactctctaactctcaaatgagaaactcaag 32708250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 20925392 - 20925446
Alignment:
Q  193 tggctcagaaaccaggagagaattcactctctaactctcaaatgagaaactcaag 247  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  20925392 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 20925446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 44046490 - 44046416
Alignment:
Q  104 ttaccagggttctattggatggagatccacataatctactctttctgatctttgagcaagctttcgctgatcaaa 178  Q
    |||||| |||||  ||||||| ||||||||| | |  |||||||||||||| || |||||||| |||||||||||    
T  44046490 ttaccatggttcagttggatgtagatccacacatttcactctttctgatctctgcgcaagcttacgctgatcaaa 44046416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University