View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1278-2A-Insertion-9 (Length: 762)
Name: NF1278-2A-Insertion-9
Description: NF1278-2A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1278-2A-Insertion-9 |
 | |
|
| [»] chr5 (14 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 699; Significance: 0; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 8 - 762
Target Start/End: Complemental strand, 10046491 - 10045737
Alignment:
| Q |
8 |
cgcggaagcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtggtcgccatcggaacagtgtattccttc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||| || ||| |
|
|
| T |
10046491 |
cgcggaagcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtcgttgccatcggcaccgtgtactctttc |
10046392 |
T |
|
| Q |
108 |
ccatcgagcaacaaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaacctt |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10046391 |
ccatcaagcaacaaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaacctt |
10046292 |
T |
|
| Q |
208 |
ccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttgattcaagcga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10046291 |
ccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttgattcaagcga |
10046192 |
T |
|
| Q |
308 |
gtatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatggaaagtagcaccggtgccggcaaattcgccggaacaactttttct |
407 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10046191 |
gtatgacggaattgtaccggttaccaccgcacggacaacctcgtcatcttccatggaaagtagcaccggtgccggcaaattcgccggaacaactttttca |
10046092 |
T |
|
| Q |
408 |
acggggattttcggaggtagcttctgtgcgactccggcgaggcatgaaccggagtttttcgcaatgtcggattcatcttcttcgtcgtattgaacagcgc |
507 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10046091 |
acggggattctcggaggtagcttctgtgcgactccggcgaggcatgaaccggagtttttcgcaatgtcggattcatcttcttcgtcgtattgaacagcgc |
10045992 |
T |
|
| Q |
508 |
gagaagcggcgaaaggatgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagat |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10045991 |
gagaagcggcgaaaggatgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagat |
10045892 |
T |
|
| Q |
608 |
tgtgagaacatgaagaggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgttt |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
10045891 |
tgtgagaacatgaagaggtgtggaggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgttt |
10045792 |
T |
|
| Q |
708 |
gttaagtagagtgaagattgtgactgtgaatcaagcttttggttctttgtttttg |
762 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10045791 |
gttaagtagagtgaagattgtgactgtgaatcaagcttttggttctttgtttttg |
10045737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 12 - 364
Target Start/End: Complemental strand, 39676431 - 39676079
Alignment:
| Q |
12 |
gaagcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtggtcgccatcggaacagtgtattccttcccat |
111 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||| ||||| || || |||||||| || |||| |
|
|
| T |
39676431 |
gaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttaccat |
39676332 |
T |
|
| Q |
112 |
cgagcaacaaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaaccttccat |
211 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39676331 |
cgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccat |
39676232 |
T |
|
| Q |
212 |
tggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttgattcaagcgagtat |
311 |
Q |
| |
|
||||||||| |||||| |||| |||||||||||||| |||||||| | ||| | || |||||| ||||||||| || || |||||||||||||| |
|
|
| T |
39676231 |
tggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaa |
39676132 |
T |
|
| Q |
312 |
gaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga |
364 |
Q |
| |
|
|| ||||||| || | || || |||| |||||||| |||||||||||||| |
|
|
| T |
39676131 |
gatggaattgatccagacaccactgcaccaacaacctcctcatcttccatgga |
39676079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 9 - 364
Target Start/End: Original strand, 10873435 - 10873790
Alignment:
| Q |
9 |
gcggaagcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtggtcgccatcggaacagtgtattccttcc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| || || ||||| || || ||||| || |||| |
|
|
| T |
10873435 |
gcggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcc |
10873534 |
T |
|
| Q |
109 |
catcgagcaacaaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaaccttc |
208 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
10873535 |
cgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttc |
10873634 |
T |
|
| Q |
209 |
cattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttgattcaagcgag |
308 |
Q |
| |
|
||| |||||||| |||||| ||||||||||||||||||| |||||||| | || || |||||| ||||||||| || || |||||||||||| |
|
|
| T |
10873635 |
catcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgag |
10873734 |
T |
|
| Q |
309 |
tatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga |
364 |
Q |
| |
|
|| || ||||||| || | || || |||| ||||||||| || ||||||||||| |
|
|
| T |
10873735 |
taagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatgga |
10873790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 9 - 364
Target Start/End: Original strand, 10878506 - 10878861
Alignment:
| Q |
9 |
gcggaagcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtggtcgccatcggaacagtgtattccttcc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| || || ||||| || || ||||| || |||| |
|
|
| T |
10878506 |
gcggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcc |
10878605 |
T |
|
| Q |
109 |
catcgagcaacaaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaaccttc |
208 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
10878606 |
cgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttc |
10878705 |
T |
|
| Q |
209 |
cattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttgattcaagcgag |
308 |
Q |
| |
|
||| |||||||| |||||| ||||||||||||||||||| |||||||| | || || |||||| ||||||||| || || |||||||||||| |
|
|
| T |
10878706 |
catcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgag |
10878805 |
T |
|
| Q |
309 |
tatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga |
364 |
Q |
| |
|
|| || ||||||| || | || || |||| ||||||||| || ||||||||||| |
|
|
| T |
10878806 |
taagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatgga |
10878861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 9 - 364
Target Start/End: Original strand, 10883577 - 10883932
Alignment:
| Q |
9 |
gcggaagcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtggtcgccatcggaacagtgtattccttcc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| || || ||||| || || ||||| || |||| |
|
|
| T |
10883577 |
gcggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcc |
10883676 |
T |
|
| Q |
109 |
catcgagcaacaaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaaccttc |
208 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
10883677 |
cgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttc |
10883776 |
T |
|
| Q |
209 |
cattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttgattcaagcgag |
308 |
Q |
| |
|
||| |||||||| |||||| ||||||||||||||||||| |||||||| | || || |||||| ||||||||| || || |||||||||||| |
|
|
| T |
10883777 |
catcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgag |
10883876 |
T |
|
| Q |
309 |
tatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga |
364 |
Q |
| |
|
|| || ||||||| || | || || |||| ||||||||| || ||||||||||| |
|
|
| T |
10883877 |
taagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatgga |
10883932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 8 - 364
Target Start/End: Complemental strand, 10866871 - 10866515
Alignment:
| Q |
8 |
cgcggaagcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtggtcgccatcggaacagtgtattccttc |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| || || ||||| || || ||||| || ||| |
|
|
| T |
10866871 |
cgcggaagccccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattc |
10866772 |
T |
|
| Q |
108 |
ccatcgagcaacaaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaacctt |
207 |
Q |
| |
|
|| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| || |||||||||| |
|
|
| T |
10866771 |
ccgtcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatcggcatctcgcaacactgtcctaatatagaattgtagtcaaaacctt |
10866672 |
T |
|
| Q |
208 |
ccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttgattcaagcga |
307 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||||||||||||||||||| | || || |||||| ||||||||| || || ||||||||||| |
|
|
| T |
10866671 |
ccatcggtaaaccttcaagtgaccttccggtaactctctccaccgcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcga |
10866572 |
T |
|
| Q |
308 |
gtatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga |
364 |
Q |
| |
|
||| || ||||||| || | || || |||| ||||||||| || ||||||||||| |
|
|
| T |
10866571 |
gtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatgga |
10866515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 9 - 364
Target Start/End: Original strand, 10887495 - 10887850
Alignment:
| Q |
9 |
gcggaagcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtggtcgccatcggaacagtgtattccttcc |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| || || |||||||||||||||||||| || || ||||| || || |||||||| |||| |
|
|
| T |
10887495 |
gcggaagcacctccggaaacataaatagctttacagcctctgttggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtattcattcc |
10887594 |
T |
|
| Q |
109 |
catcgagcaacaaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaaccttc |
208 |
Q |
| |
|
| |||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||| || |||||||||| |
|
|
| T |
10887595 |
cgtcgagcaacaaaggaccggcaacacccaccggaatttgaacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaaccttt |
10887694 |
T |
|
| Q |
209 |
cattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttgattcaagcgag |
308 |
Q |
| |
|
||| |||||||| |||||| |||||||||| |||||||| |||||||| | ||| || ||||| |||||||||||| || || ||||| ||| |
|
|
| T |
10887695 |
catcggtaaaccttcaagtgaccttccggtaaccctctccactgcttggttcctaatctttgctgcacgacggcaatctccgagcttcgactcaagggag |
10887794 |
T |
|
| Q |
309 |
tatgaaggaattgtaccggttacaaccgcacggacaacctcgtcatcttccatgga |
364 |
Q |
| |
|
|| |||||||||| || | ||| || |||| ||||||||| || ||||||||||| |
|
|
| T |
10887795 |
taagaaggaattgatcccgataccactgcaccgacaacctcttcgtcttccatgga |
10887850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 524 - 724
Target Start/End: Complemental strand, 39675982 - 39675782
Alignment:
| Q |
524 |
atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga |
623 |
Q |
| |
|
|||||| |||||| ||| ||| ||||||||| ||||||| |||| | |||| ||||||||||| | | | |||||| ||||||||||| ||||| ||| |
|
|
| T |
39675982 |
atgaaggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggaga |
39675883 |
T |
|
| Q |
624 |
ggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgtttgttaagtagagtgaag |
723 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| ||||||||| || ||||| |||||||| ||||||||||||| | |||||||||||| ||||||| |
|
|
| T |
39675882 |
ggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaag |
39675783 |
T |
|
| Q |
724 |
a |
724 |
Q |
| |
|
| |
|
|
| T |
39675782 |
a |
39675782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 524 - 715
Target Start/End: Complemental strand, 10866409 - 10866218
Alignment:
| Q |
524 |
atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga |
623 |
Q |
| |
|
|||||| |||||| ||||||||||||||| |||||||| | ||||||||| ||||||||||||| | || |||||||||||||||||| || || ||| |
|
|
| T |
10866409 |
atgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggaga |
10866310 |
T |
|
| Q |
624 |
ggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgtttgttaagta |
715 |
Q |
| |
|
||||| |||||||||||||| |||||||||| || |||||||| || ||||| |||||||| ||||| |||||||| | ||||||||||| |
|
|
| T |
10866309 |
ggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
10866218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 524 - 715
Target Start/End: Original strand, 10873896 - 10874087
Alignment:
| Q |
524 |
atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga |
623 |
Q |
| |
|
|||||| |||||| ||||||||||||||| |||||||| | ||||||||| ||||||||||||| | || |||||||||||||||||| || || ||| |
|
|
| T |
10873896 |
atgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggaga |
10873995 |
T |
|
| Q |
624 |
ggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgtttgttaagta |
715 |
Q |
| |
|
||||| |||||||||||||| |||||||||| || |||||||| || ||||| |||||||| ||||| |||||||| | ||||||||||| |
|
|
| T |
10873996 |
ggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
10874087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 524 - 715
Target Start/End: Original strand, 10878967 - 10879158
Alignment:
| Q |
524 |
atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga |
623 |
Q |
| |
|
|||||| |||||| ||||||||||||||| |||||||| | ||||||||| ||||||||||||| | || |||||||||||||||||| || || ||| |
|
|
| T |
10878967 |
atgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggaga |
10879066 |
T |
|
| Q |
624 |
ggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgtttgttaagta |
715 |
Q |
| |
|
||||| |||||||||||||| |||||||||| || |||||||| || ||||| |||||||| ||||| |||||||| | ||||||||||| |
|
|
| T |
10879067 |
ggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
10879158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 524 - 715
Target Start/End: Original strand, 10884038 - 10884229
Alignment:
| Q |
524 |
atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga |
623 |
Q |
| |
|
|||||| |||||| ||||||||||||||| |||||||| | ||||||||| ||||||||||||| | || |||||||||||||||||| || || ||| |
|
|
| T |
10884038 |
atgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagagattgtgaggacgtggaga |
10884137 |
T |
|
| Q |
624 |
ggtgtggaggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgtttgttaagta |
715 |
Q |
| |
|
||||| |||||||||||||| |||||||||| || |||||||| || ||||| |||||||| ||||| |||||||| | ||||||||||| |
|
|
| T |
10884138 |
ggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatttgttaagta |
10884229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 531 - 724
Target Start/End: Original strand, 10887972 - 10888165
Alignment:
| Q |
531 |
atgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaagaggtgtgg |
630 |
Q |
| |
|
|||||| || ||||||||||||| |||||||| | |||||||| ||||||||||| ||| | |||||||||||| |||||| | || |||||||| | |
|
|
| T |
10887972 |
atgaaggcagtgccgaagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagagactgtgaggatgtggagaggtgtag |
10888071 |
T |
|
| Q |
631 |
aggttcggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgtttgttaagtagagtgaaga |
724 |
Q |
| |
|
||||||||||||| |||||||||| || ||||||||| |||||| | |||||||| ||||| |||||||| ||||||||||| || |||||||| |
|
|
| T |
10888072 |
aggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtttgttaaatacagtgaaga |
10888165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 37948325 - 37948119
Alignment:
| Q |
14 |
agcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtggtcgccatcggaacagtgtattccttcccatcg |
113 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| || |||||||| |||||||||||||| ||||| |
|
|
| T |
37948325 |
agcaccaccagaaacatatatagctttacaccctctattagtactagcaaccaaacacccttctgtagtcgccattggaacagtgtattcaaatccatcc |
37948226 |
T |
|
| Q |
114 |
agcaacaaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaaccttccattg |
213 |
Q |
| |
|
| |||||| ||||| || || ||||||||||| |||| | | |||| |||||| ||||||||||| ||||| |||| || |||||||| ||||| | || |
|
|
| T |
37948225 |
aacaacaatggtcccgccacacccaccggaatttgaatataccctaccggcatttcacaacactgccctaaaatcgcttcgtaatcaaatccttctaatg |
37948126 |
T |
|
| Q |
214 |
gtaaacc |
220 |
Q |
| |
|
||||||| |
|
|
| T |
37948125 |
gtaaacc |
37948119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 30709477 - 30709685
Alignment:
| Q |
12 |
gaagcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtggtcgccatcggaacagtgtattccttcccat |
111 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||| |||||||||||||||||||| | ||| ||||| ||||| ||||| || |||||||| || |||| |
|
|
| T |
30709477 |
gaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacccttcagtggtagccatgggcacagtgtactcaactccat |
30709576 |
T |
|
| Q |
112 |
cgagcaacaaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaaccttccat |
211 |
Q |
| |
|
| | ||||| || || ||||| || |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
30709577 |
ctaacaacagtggacccgcaacaccaaccggaatttgaacaaaccctatcggcatctcacaacactgtcccaatatcgaatcgtaatcaaaaccttccaa |
30709676 |
T |
|
| Q |
212 |
tggtaaacc |
220 |
Q |
| |
|
|||||||| |
|
|
| T |
30709677 |
cggtaaacc |
30709685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 636 - 706
Target Start/End: Original strand, 30710110 - 30710180
Alignment:
| Q |
636 |
cggatcttctcacgccaccggtgaagaagaaaatacgcgacagagaagaaaagaccgaagaaaactgcgtt |
706 |
Q |
| |
|
||||||||||||||||| ||||| || || ||||||||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
30710110 |
cggatcttctcacgccaacggtggaggaggaaatacgcgacggagaagaaaacaccgaagaaaacagcgtt |
30710180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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