View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12780_high_3 (Length: 387)
Name: NF12780_high_3
Description: NF12780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12780_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 5522415 - 5522254
Alignment:
| Q |
41 |
ggaatcatcatgaacactaaaggggaaataataattcaagagtttgaagattgaatgtttaattagttttaggaaatgggaggaaacaattaataatgtg |
140 |
Q |
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| T |
5522415 |
ggaatcatcatgaagactaaaggggaaatagtaattcaagagtttgaagattgaatgtttaattagttttaggaaatgggaggaaacaattaataatgtg |
5522316 |
T |
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| Q |
141 |
ttggtttgattggataatgccacatgtttatggcaaaacatactttggttgacactaataaa |
202 |
Q |
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| T |
5522315 |
ttcgtttgattggacaatgccatatgtttatgaccaaacatactttggttgacactaataaa |
5522254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 268 - 374
Target Start/End: Complemental strand, 5521202 - 5521095
Alignment:
| Q |
268 |
atagaacttactagacacacgtgagtaataacaacacacactcacataagaag-nnnnnnnnntctaccctttccctcattcttactccctccctcccat |
366 |
Q |
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| T |
5521202 |
atagaacttactaaacacacgtgagtaataacaacacacactcacataagaagaaaaaaaaaatctaccctttccctcattcttactccctccctcccat |
5521103 |
T |
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| Q |
367 |
aactctct |
374 |
Q |
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|||||||| |
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| T |
5521102 |
aactctct |
5521095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 51754596 - 51754673
Alignment:
| Q |
119 |
ggaggaaacaattaataatgtgttggtttgattggataatgccacatgtttatggcaaaacatactttggttgacact |
196 |
Q |
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| T |
51754596 |
ggaggaaacaattaataataggttggtttgattggacaatgccatatgtttatgacaaaacatactttggttgacact |
51754673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 51766540 - 51766578
Alignment:
| Q |
164 |
atgtttatggcaaaacatactttggttgacactaataaa |
202 |
Q |
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| T |
51766540 |
atgtttatgacaaaacatactttggttgacactaataaa |
51766578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 26895031 - 26894983
Alignment:
| Q |
272 |
aacttactagacacacgtgagtaataacaacacacactcacataagaag |
320 |
Q |
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| T |
26895031 |
aacttactagacacacgtgagtaataacaacacacattcacataagaag |
26894983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 26900470 - 26900422
Alignment:
| Q |
272 |
aacttactagacacacgtgagtaataacaacacacactcacataagaag |
320 |
Q |
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| T |
26900470 |
aacttactagacacacgtgagtaataacaacacacattcacataagaag |
26900422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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