View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12780_high_5 (Length: 295)
Name: NF12780_high_5
Description: NF12780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12780_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 3075350 - 3075068
Alignment:
| Q |
1 |
attagctccacgagccgttgagtgcatatttcttggttatgcatctgagtctaaggggtatcgtttatggtgctctgatccaaaatcacaaaaattaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3075350 |
attagctccacgagccgttgagtgcatatttcttgattatgcatctgagtctaaggggtatcgtttgtggtgctctgatccaaaatcacaaaaattaatt |
3075251 |
T |
|
| Q |
101 |
cttagtagagatgtgacttttaatgaggatgcattattatcttctggaaaacagtcttttgtgtcttcttctattagtacaggtaatctgcagagtacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3075250 |
cttagtagagatgtgacttttaatgaggatgcattattatcttctagaaaacagtcttttgtgtcttcttctactagtacaggtaatctgcagagtacta |
3075151 |
T |
|
| Q |
201 |
gcgagaaggtggagtttgtattaaaacctgcagctcctaacgttgatgtcccatcttcctctacaaatgaatttaacattgat |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3075150 |
gcgagaaggtggagtttgtattaaaacctgcagctccttacgttgatgtcccatcttcctctacaaatgaatttaacattgat |
3075068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 29473191 - 29473455
Alignment:
| Q |
1 |
attagctccacgagccgttgagtgcatatttcttggttatgcatctgagtctaaggggtatcgtttatggtgctctgatccaaaatcacaaaaattaatt |
100 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
29473191 |
attagctccaagagctgttgagtgcatatttcttggttatgcatctgagtctaaggggtatcgtttgtggtgctctgattcaaaatcacaaaaattaatt |
29473290 |
T |
|
| Q |
101 |
cttagtagagatgtgacttttaatgaggatgcattattatcttctggaaaacagtcttttgtgtcttcttctattagtacaggtaatctgcagagtacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| || ||| |
|
|
| T |
29473291 |
cttagtagagatgtgacttttaatgaggatgtattattatcttctggaaaacagtcttttgtgttttcttctactagtacaggtaatttg-------cta |
29473383 |
T |
|
| Q |
201 |
gcgagaaggtggagtttgtattaaaacctgcagctcctaacgttgatgtcccatcttcctctacaaatgaat |
272 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
29473384 |
gcgagaaggtggagtttgtattaaagcatgcagctcctaatgttaatgtcccatcttcctctacaaatgaat |
29473455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 15239528 - 15239239
Alignment:
| Q |
1 |
attagctccacgagccgttgagtgcatatttcttggttatgcatctgagtctaaggggtatcgtttatggtgctctgatccaaaatcacaaaaattaatt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15239528 |
attagctccaagagccgttgagtgcatatttctttcttatgcatctgagtctaaggggtatcgtttgtggtgctctgatccaaaatcacaaaaattaatt |
15239429 |
T |
|
| Q |
101 |
cttagtagagatgtgacttttaatgaggatgcattattatcttctggaaaacagtcttttgtgtcttcttctattagtacaggtaatctgcagagtacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
15239428 |
cttagtagagatgtgacttttaatgaggatgcattattatcttctggaaaacagtcttttgtgtcttcttctactagtataggtaatctgcaaagtacta |
15239329 |
T |
|
| Q |
201 |
gcgagaaggtggagtttgtattaaaacctgcagctcctaacgttgatgtcccatcttcctctacaaatgaatttaacattgatgtccatc |
290 |
Q |
| |
|
|| |||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
15239328 |
gcaagaacgtggagtttgtattaaagcttgcagctcctaacgttgatgtcccatcttcctctacaaatgaatctaacattgatgaccatc |
15239239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 23045891 - 23046174
Alignment:
| Q |
1 |
attagctccacgagccgttgagtgcatatttcttggttatgcatctgagtctaaggggtatcgtttatggtgctctgatccaaaatcacaaaaattaatt |
100 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23045891 |
attagctccaagagctgttgagtgcatatttcttggttatgcatctgagtctaaggggtatcgtttgtggtgctctgatccaaaatcacaaaaattaatt |
23045990 |
T |
|
| Q |
101 |
cttagtagagatgtgacttttaatgaggatgcattattatcttctggaaaacagtcttttgtgtcttcttctattagtacaggtaatctgcagagtacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
23045991 |
cttagtagagatgtgacttttaatgaggattcattattatcttctggaaaacagtcttttgtgtcttcttctactagtacaggtaatctgcaaagtacta |
23046090 |
T |
|
| Q |
201 |
gcgagaaggtggagtttgtattaaaacctgcagctcctaacgttgatgtcccatcttcctctacaaatgaatttaacattgatg |
284 |
Q |
| |
|
||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||| | || |||||||||| |||||||||| |
|
|
| T |
23046091 |
gcgagaaggtggagtttgtattaaagcccgcatctcctaatgttgatgtcccatctacttcaacaaatgaatccaacattgatg |
23046174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University