View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12780_low_1 (Length: 464)

Name: NF12780_low_1
Description: NF12780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12780_low_1
NF12780_low_1
[»] chr4 (1 HSPs)
chr4 (13-464)||(10598818-10599263)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 13 - 464
Target Start/End: Original strand, 10598818 - 10599263
Alignment:
Q  13 gacatcattaggtttcacacctgttttgagcatatcatagaacaattctagtgcttttgtagcaaacccatgttttgcaaaaccatttatgatagaggtc 112  Q
    |||||||||||| |||||||||||||  ||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  10598818 gacatcattaggcttcacacctgtttcaagcatattatagaacaattctagtgcttttgaagcaaatccatgttttgcaaaaccatttatgatagaggtc 10598917  T
Q  113 caagttatgacattgcgatcttccatgtcattaaagacctgtaaagcagcttctttgtttccacacttagaatacatagagatcaaagcattattaacac 212  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10598918 caagttatgacattgcaatcttccatgtcattaaagacctgtaaagcagcttctttgtttccacacttggaatacatagagatcaaagcattattaacac 10599017  T
Q  213 ttaggtcagtccgaaatcccatcttcaccaccatggcatgaatttgttcacccttacctattgtaccaatacaagcagcaccactcaacaggctagcata 312  Q
    ||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  10599018 ttaagtcagtccgaaatccaatcttaaccaccatggcatgaatttgttcacccttaccaattgtaccaatacaagcagcaccactcaagaggctagcata 10599117  T
Q  313 taaaaacgaactaactttgctactaccagtgtattcaatttcagggtttatgtcttgttcagaatttaaattcgattctttcacccttgcatcaccaacg 412  Q
    |  |||||||||||||   | |||||||   ||||||| |||| |||  | ||||||||||||||| |||||  | ||||||||  ||| |||| ||||     
T  10599118 tgtaaacgaactaact---ccactaccaacatattcaacttcacggtccaagtcttgttcagaattcaaattaaaatctttcacatttgtatcatcaaca 10599214  T
Q  413 atcccactccccgaaaccaaattcttctcaaacaaaacatcaaaacacttgc 464  Q
    |   |  || ||||||||||||||||||||||||||||||||||||||||||    
T  10599215 a---ctgtctccgaaaccaaattcttctcaaacaaaacatcaaaacacttgc 10599263  T

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