View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12780_low_10 (Length: 241)
Name: NF12780_low_10
Description: NF12780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12780_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 40085636 - 40085424
Alignment:
| Q |
10 |
agcaaaggaagcaaactcaccaggtacatgaaggcacccttaaggttcctggtaaaggtaaaggacatgtatgtcaatggcatgatccaatgttctcgtg |
109 |
Q |
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| T |
40085636 |
agcaaaggaagcaagctcaccaggtacatgaaggcacccttaaggttcctggtaaagttaaaggacatgtatgtcaatggcatgatccaatgttctcgtg |
40085537 |
T |
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| Q |
110 |
attttgcctatgtagatcatgcaaccatgggatgtcctacgcaactttactcctttcctaggagcttcagtgttaactctacaacatcaaccacaagtga |
209 |
Q |
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| T |
40085536 |
attttgcctatgtagatcatgcaaccatgggatgtcctacgcaactttactcctttcctaggagcttcagtgttaactctacaacatcgaccataagtga |
40085437 |
T |
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| Q |
210 |
tgatgatttcaag |
222 |
Q |
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||||||||||||| |
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| T |
40085436 |
tgatgatttcaag |
40085424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 40081154 - 40081081
Alignment:
| Q |
33 |
gtacatgaaggcacccttaaggttcctggtaaaggtaaaggacatgtatgtcaatggcatgatccaatgttctc |
106 |
Q |
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||||||||||||||| |||||||| || ||||||||||||| |||| ||| |||||||||||| ||||||| |
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| T |
40081154 |
gtacatgaaggcacctttaaggttgttgacaaaggtaaaggacttgtacgtccgtggcatgatccattgttctc |
40081081 |
T |
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