View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12780_low_11 (Length: 221)
Name: NF12780_low_11
Description: NF12780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12780_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44853073 - 44853293
Alignment:
| Q |
1 |
agtggaaggaataaccggtgtttctgcgaagatcggctgcagaaaagtcggagaaacggcggcggttgagagccacgcgctgccggagaaagcgagagtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44853073 |
agtggaaggaataaccggtgtttctgcgaagatcggctgaagaaaagtcggagaaacggcgacggttgagagccacgcgctgccggagaaagcgagagtg |
44853172 |
T |
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| Q |
101 |
atgaaagaagtgagagtgaccaactgatgaaacgtgaaattcgggacgaaatgcaaaatggtgagaaaatgagactgtggttttatagcaggtggggttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44853173 |
atgaaagaagtgagagtgaccaactgatgaaacgtgaaattcgggacgaaatgtaaaatggtgagaaaatgagactgtggttttatagcaggtggggttt |
44853272 |
T |
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| Q |
201 |
tcatgtgccggacttcaaatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
44853273 |
tcatgtgccggacttcaaatt |
44853293 |
T |
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