View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12780_low_2 (Length: 463)
Name: NF12780_low_2
Description: NF12780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12780_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 158 - 449
Target Start/End: Complemental strand, 25863961 - 25863670
Alignment:
| Q |
158 |
cataaaaatacaaagacaccatgtgtaacagcataaagacgatatatgaaagcattagtataaaatgatttaagaaatacctcttcaagtggtgctgatt |
257 |
Q |
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| T |
25863961 |
cataaaaatacaaagacaccgtgcttaataccataaagacgatatatgaaagcattagtataaaatgatttaagaaatacctcttcaagtggtgctgatt |
25863862 |
T |
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| Q |
258 |
tagaatgtccaagtttggctggcctttgagtagctttagtttcagtaatacttggttctcttaggatgatttccttggagggagacgttggcaccggaac |
357 |
Q |
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| T |
25863861 |
tggaatgtccaagtttggctgacctttgagcactttttatttcagtaatacttggttctcttgggatgatttcattagagggagatgttggcaccggaac |
25863762 |
T |
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| Q |
358 |
tatcacttttccttccatcacatgtacaccaagagcatctagaaataaaccttttctaccatgaatgccaactatctgtccttctttcatct |
449 |
Q |
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| T |
25863761 |
tatcacttttccttccatcacatgtacaccaagagcatctagaaataaaccttttctaccatgaaggccaactatctgcccttctttcatct |
25863670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 25864201 - 25864149
Alignment:
| Q |
20 |
tggtccacatggaactggttcttgagtcacgccacgagaaacctatgaaatag |
72 |
Q |
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| T |
25864201 |
tggtccacatggaactggttcttgagtcacaccacgagaaacctatgaaatag |
25864149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 426
Target Start/End: Complemental strand, 30198513 - 30198448
Alignment:
| Q |
361 |
cacttttccttccatcacatgtacaccaagagcatctagaaataaaccttttctaccatgaatgcc |
426 |
Q |
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| T |
30198513 |
cacttttccttcaagcacatgtacaccaaaagcatcgagaaacaaaccttttctcccatgaatgcc |
30198448 |
T |
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