View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12780_low_4 (Length: 402)

Name: NF12780_low_4
Description: NF12780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12780_low_4
NF12780_low_4
[»] chr3 (5 HSPs)
chr3 (11-247)||(38156391-38156628)
chr3 (160-228)||(48811405-48811474)
chr3 (158-228)||(46110888-46110959)
chr3 (135-227)||(28874493-28874587)
chr3 (92-228)||(45529087-45529225)
[»] chr5 (5 HSPs)
chr5 (135-232)||(12198192-12198290)
chr5 (150-222)||(2689277-2689349)
chr5 (172-222)||(24232489-24232539)
chr5 (161-216)||(2827602-2827658)
chr5 (149-228)||(30370883-30370962)
[»] chr7 (5 HSPs)
chr7 (135-233)||(47639179-47639279)
chr7 (160-228)||(46726136-46726205)
chr7 (151-228)||(36939471-36939549)
chr7 (160-228)||(2959611-2959680)
chr7 (158-201)||(4133825-4133868)
[»] chr4 (11 HSPs)
chr4 (150-202)||(12618721-12618773)
chr4 (135-228)||(53391245-53391340)
chr4 (150-227)||(5799013-5799091)
chr4 (150-217)||(11260568-11260636)
chr4 (150-196)||(14949014-14949060)
chr4 (144-228)||(31072490-31072576)
chr4 (172-228)||(36112535-36112591)
chr4 (160-196)||(48315957-48315993)
chr4 (175-228)||(13800748-13800802)
chr4 (175-228)||(54552798-54552852)
chr4 (135-229)||(41415762-41415858)
[»] chr2 (11 HSPs)
chr2 (150-236)||(20128321-20128409)
chr2 (150-229)||(39309755-39309835)
chr2 (92-223)||(24791994-24792128)
chr2 (149-216)||(35022619-35022687)
chr2 (150-228)||(24762741-24762820)
chr2 (150-228)||(24765335-24765414)
chr2 (150-196)||(2713454-2713500)
chr2 (135-196)||(34233933-34233995)
chr2 (164-233)||(37978489-37978559)
chr2 (160-217)||(39445468-39445526)
chr2 (160-228)||(814996-815065)
[»] chr8 (4 HSPs)
chr8 (150-228)||(24733172-24733251)
chr8 (175-228)||(8674459-8674513)
chr8 (144-228)||(44253807-44253892)
chr8 (172-225)||(15353819-15353873)
[»] chr1 (6 HSPs)
chr1 (150-228)||(46803515-46803594)
chr1 (160-229)||(27004060-27004130)
chr1 (138-228)||(43024927-43025019)
chr1 (175-228)||(45775857-45775911)
chr1 (175-227)||(16790297-16790350)
chr1 (156-228)||(27542860-27542933)
[»] scaffold0003 (1 HSPs)
scaffold0003 (92-228)||(353942-354080)
[»] chr6 (2 HSPs)
chr6 (87-188)||(4806466-4806568)
chr6 (175-227)||(7341412-7341465)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 7e-96; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 38156391 - 38156628
Alignment:
Q  11 cacagactataatcacctttcttgttacttaagtttcagtaatgcttcataacattttaagcccaacaatattttataggaaaatgttaacgagtacccc 110  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  38156391 cacacactataatcacctttcttgttacttaagtttcagtaaagcttcataacattttaaacccaacgatattttataggaaaatgttaacgagtacccc 38156490  T
Q  111 catgatactatttaagaagattttatagtaaactttta-taaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaaaatactttt 209  Q
    |||||||  || ||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||     
T  38156491 catgatatgatataagaagatttaatagtaaacttttattaaaatatgtgtaatcaatgcattgaaatttgtaacatttgactttttaaaaaatactttc 38156590  T
Q  210 taaatttaggatccttaaaagtgtcccagttaactaaa 247  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  38156591 taaatttaagatccttaaaagtgtcccggttaactaaa 38156628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 48811405 - 48811474
Alignment:
Q  160 taatcaatgcaatgaaatttgtaacatttgac-tttttaaaaaatactttttaaatttaggatccttaaa 228  Q
    ||||||||||| |||||||||||||||| ||| |||||||  |||| ||| |||||||||||||||||||    
T  48811405 taatcaatgcattgaaatttgtaacattagacttttttaatgaatattttctaaatttaggatccttaaa 48811474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 46110888 - 46110959
Alignment:
Q  158 tataatcaatgcaatgaaatttgtaacatttga-ctttttaaaaaatactttttaaatttaggatccttaaa 228  Q
    |||||| |||| | ||||||||||||||||| | |||||| |  |||| |||||||||||||||||||||||    
T  46110888 tataataaatgtattgaaatttgtaacatttaatctttttgaggaatattttttaaatttaggatccttaaa 46110959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 28874587 - 28874493
Alignment:
Q  135 atagtaaacttttataaaata-tgtataatcaatgcaatgaaatttgtaacatttgac-tttttaaaaaatactttttaaatttaggatccttaa 227  Q
    |||||||| |||||| ||| | ||| ||||||||||| || |||||||||||||| || |||||||| |||  ||| ||||||||| ||||||||    
T  28874587 atagtaaatttttatgaaaaactgtgtaatcaatgcattggaatttgtaacattttacttttttaaagaatgttttctaaatttagtatccttaa 28874493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 45529087 - 45529225
Alignment:
Q  92 aaatgttaacgagtacccccatgatactatttaagaagattttatagtaaacttttat-aaaatatgtataatcaatgcaatgaaatttgtaacatttga 190  Q
    |||||||||||||| |||||  |||||| |||||| |   || |||||||  |||||| ||||| | | ||||||||||| ||||| ||||||| |||||    
T  45529087 aaatgttaacgagtgcccccgggatactctttaagcacccttaatagtaagtttttatgaaaatttatgtaatcaatgcactgaaacttgtaacgtttga 45529186  T
Q  191 c-tttttaaaaaatactttttaaatttaggatccttaaa 228  Q
    | ||||| || |||| ||| ||||||| |||| ||||||    
T  45529187 cttttttgaagaatattttctaaatttgggatgcttaaa 45529225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 232
Target Start/End: Complemental strand, 12198290 - 12198192
Alignment:
Q  135 atagtaaacttttat-aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaaaatactttttaaatttaggatccttaaaagtg 232  Q
    |||||||| |||||| |||||||||  ||| || ||| |||||||||||| ||||||||||||||| |||| ||||||||||| | |||||||||||||    
T  12198290 atagtaaatttttatgaaaatatgtgcaattaaagcattgaaatttgtaatatttgactttttaaacaatattttttaaatttggaatccttaaaagtg 12198192  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 2689277 - 2689349
Alignment:
Q  150 aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaaaatactttttaaatttaggatc 222  Q
    |||||||||||||||||  || |  ||||| |||||||||| ||||||||||||| |||||||||||| ||||    
T  2689277 aaaatatgtataatcaaaacatttgaatttataacatttgattttttaaaaaatattttttaaatttaagatc 2689349  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 24232489 - 24232539
Alignment:
Q  172 tgaaatttgtaacatttgactttttaaaaaatactttttaaatttaggatc 222  Q
    |||||||||||| |||| | |||||||| |||| |||||||||||||||||    
T  24232489 tgaaatttgtaatatttaattttttaaataatattttttaaatttaggatc 24232539  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 2827602 - 2827658
Alignment:
Q  161 aatcaatgcaatgaaatttgtaacatttgacttt-ttaaaaaatactttttaaattt 216  Q
    |||||||||| ||||| ||||||||||||||||| ||||| |||| ||| |||||||    
T  2827602 aatcaatgcattgaaacttgtaacatttgactttcttaaataatattttctaaattt 2827658  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 30370883 - 30370962
Alignment:
Q  149 taaaatatgtataatcaatgcaatgaaatttgtaacatttgactttt-taaaaaatactttttaaatttaggatccttaaa 228  Q
    |||||| ||| |||||||  || |||||||| ||| ||||||||||| |||||||||||||||||||| |  |||||||||    
T  30370883 taaaatctgtgtaatcaagacattgaaatttataa-atttgacttttataaaaaatactttttaaattaaaaatccttaaa 30370962  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 47639279 - 47639179
Alignment:
Q  135 atagtaaacttttataaaatat-gtataatcaatgcaatgaaatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaaaagtg 232  Q
    ||||||||||||||||||| || || |||||||| || | ||||||||||||||| | ||||| ||| |||| ||||||||||||||||||||||| |||    
T  47639279 atagtaaacttttataaaaaattgtgtaatcaatacattaaaatttgtaacatttaatttttttaaagaatattttttaaatttaggatccttaaatgtg 47639180  T
Q  233 t 233  Q
    |    
T  47639179 t 47639179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 46726205 - 46726136
Alignment:
Q  160 taatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaa 228  Q
    ||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||| | |||||||||    
T  46726205 taatcaatgcattgaaatttgtaacatttgacttttttaaagaatattttttaaatttggtatccttaaa 46726136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 36939549 - 36939471
Alignment:
Q  151 aaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaa 228  Q
    |||| ||| |||| |||||| ||||||||||||||||||||| |||| |  |||| |||||||||||| ||||||||||    
T  36939549 aaatttgtgtaattaatgcactgaaatttgtaacatttgacttttttgaggaatattttttaaatttaagatccttaaa 36939471  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 2959611 - 2959680
Alignment:
Q  160 taatcaatgcaatgaaatttgtaacatttgacttttt-aaaaaatactttttaaatttaggatccttaaa 228  Q
    ||||||||||| | |||||| |||||||| ||||||| |||||||| ||||| |||||| ||||||||||    
T  2959611 taatcaatgcattaaaatttataacatttaactttttcaaaaaatatttttttaatttatgatccttaaa 2959680  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 4133825 - 4133868
Alignment:
Q  158 tataatcaatgcaatgaaatttgtaacatttgactttttaaaaa 201  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||||    
T  4133825 tataatcaatgcattgaaatttgtaacatttgatttttttaaaa 4133868  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 12618721 - 12618773
Alignment:
Q  150 aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaaaa 202  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  12618721 aaaatttgtataatcaatgcattgaaatttataacatttgactttttaaaaaa 12618773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 53391245 - 53391340
Alignment:
Q  135 atagtaaacttttataaaa-tatgtataatcaatgcaatgaaatttgtaacatttgactt-tttaaaaaatactttttaaatttaggatccttaaa 228  Q
    |||||||||| |||||||| |||||  |||||||||| |||||||||||||||||||||| ||| || |||| ||| ||||||||| || ||||||    
T  53391245 atagtaaactcttataaaaatatgtgcaatcaatgcattgaaatttgtaacatttgacttcttttaagaatattttctaaatttagtattcttaaa 53391340  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 5799013 - 5799091
Alignment:
Q  150 aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaa 227  Q
    ||||| ||||||||||| ||| | |||||||||| |||||||||||||||| |||| ||| |||||||| |||||||||    
T  5799013 aaaatttgtataatcaacgcatttaaatttgtaatatttgactttttaaaagaatattttctaaatttaagatccttaa 5799091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 11260636 - 11260568
Alignment:
Q  150 aaaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaattta 217  Q
    ||||||| | |||||| |||| ||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  11260636 aaaatatatgtaatcattgcattgaaatttgtaacatttgacttttttaaagaatattttttaaattta 11260568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 14949014 - 14949060
Alignment:
Q  150 aaaatatgtataatcaatgcaatgaaatttgtaacatttgacttttt 196  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||||||    
T  14949014 aaaatttgtgtaatcaatgcattgaaatttgtaacatttgacttttt 14949060  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 31072490 - 31072576
Alignment:
Q  144 ttttataaaata-tgtataatcaatgcaatgaaatttgtaacatttgacttttt-aaaaaatactttttaaatttaggatccttaaa 228  Q
    |||||||||| | ||| |||||||||||  | |||||||||||||||||||||| ||| |||| ||| |||||||| ||||||||||    
T  31072490 ttttataaaaaactgtgtaatcaatgcataggaatttgtaacatttgactttttcaaagaatattttctaaatttatgatccttaaa 31072576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 36112591 - 36112535
Alignment:
Q  172 tgaaatttgtaacatttgactttttaaaaaatactttttaaatttaggatccttaaa 228  Q
    ||||||||||||||||| | |||||||| |||| ||||| ||||| |||||||||||    
T  36112591 tgaaatttgtaacatttaattttttaaagaatatttttttaatttgggatccttaaa 36112535  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 48315993 - 48315957
Alignment:
Q  160 taatcaatgcaatgaaatttgtaacatttgacttttt 196  Q
    ||||||||||| |||||||||||||||||||||||||    
T  48315993 taatcaatgcattgaaatttgtaacatttgacttttt 48315957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 13800748 - 13800802
Alignment:
Q  175 aatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaaa 228  Q
    ||||||||| |||||||||||| ||| |||| ||| |||||||||||||||||||    
T  13800748 aatttgtaatatttgacttttttaaagaatattttctaaatttaggatccttaaa 13800802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 54552798 - 54552852
Alignment:
Q  175 aatttgtaacatttgac-tttttaaaaaatactttttaaatttaggatccttaaa 228  Q
    ||||||||||||||||| |||||||| |||| ||| |||||||||||| ||||||    
T  54552798 aatttgtaacatttgacctttttaaagaatattttctaaatttaggattcttaaa 54552852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 41415762 - 41415858
Alignment:
Q  135 atagtaaacttttataaaatat-gtataatcaatgcaatgaaatttgtaacatttgac-tttttaaaaaatactttttaaatttaggatccttaaaa 229  Q
    |||||||| |||||||||| || || ||||||||||| || |||||||||| | |||| |||||||| |||| ||| || |||| | ||||||||||    
T  41415762 atagtaaatttttataaaaaattgtttaatcaatgcattgtaatttgtaacttgtgacttttttaaagaatattttctatatttggaatccttaaaa 41415858  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 20128409 - 20128321
Alignment:
Q  150 aaaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaa-agtgtccc 236  Q
    |||||| || ||||||||||| || |||||||||||||||||| ||||||| ||||  || ||||||||||||||||||| ||||||||    
T  20128409 aaaatacgtgtaatcaatgcattggaatttgtaacatttgacttttttaaagaataaattataaatttaggatccttaaagagtgtccc 20128321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 39309835 - 39309755
Alignment:
Q  150 aaaatatgtataatcaatgcaatgaaatttgtaacatttgactt-tttaaaaaatactttttaaatttaggatccttaaaa 229  Q
    |||||||||||||||||| || ||||||||| || ||||||||| |||||| |||| ||| |||| |||| ||||||||||    
T  39309835 aaaatatgtataatcaattcattgaaatttgaaatatttgacttatttaaagaatattttctaaacttagaatccttaaaa 39309755  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 223
Target Start/End: Complemental strand, 24792128 - 24791994
Alignment:
Q  92 aaatgttaacgagtacccccatgatactatttaagaagattttatagtaaacttttataaaa--tatgtataatcaatgcaatgaaatttgtaacatttg 189  Q
    |||||||||||||| |||| | |  ||| ||||||||   || |||||||  ||||||||||  ||| | ||||||||||| || |||||||||||||||    
T  24792128 aaatgttaacgagtgcccctagggcactctttaagaaccattaatagtaagtttttataaaaattatatgtaatcaatgcattggaatttgtaacatttg 24792029  T
Q  190 act-ttttaaaaaatactttttaaatttaggatcc 223  Q
    ||| ||||||| |||| ||| ||||||| ||||||    
T  24792028 acttttttaaagaatattttctaaatttgggatcc 24791994  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 35022687 - 35022619
Alignment:
Q  149 taaaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaattt 216  Q
    |||||||||| ||||||||||| | |||||| ||| |||||||| |||||| ||||| |||||||||||    
T  35022687 taaaatatgtgtaatcaatgcattaaaatttataatatttgacttttttaagaaatattttttaaattt 35022619  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 24762741 - 24762820
Alignment:
Q  150 aaaatatgtataatcaatgcaatgaaatttgtaacatttgac-tttttaaaaaatactttttaaatttaggatccttaaa 228  Q
    ||||||||||||||||||  | || ||||||||| ||||||| |||||||  |||| ||| ||||||| |||||||||||    
T  24762741 aaaatatgtataatcaatatattggaatttgtaatatttgacttttttaaggaatattttctaaatttgggatccttaaa 24762820  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 24765414 - 24765335
Alignment:
Q  150 aaaatatgtataatcaatgcaatgaaatttgtaacatttga-ctttttaaaaaatactttttaaatttaggatccttaaa 228  Q
    ||||||||| ||||||||||| || ||||||||| ||||||  |||||||  |||| ||| ||||||| |||||||||||    
T  24765414 aaaatatgtgtaatcaatgcattggaatttgtaatatttgatttttttaaggaatattttctaaatttgggatccttaaa 24765335  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 2713454 - 2713500
Alignment:
Q  150 aaaatatgtataatcaatgcaatgaaatttgtaacatttgacttttt 196  Q
    ||||| |||||||||| |||| || ||||||||||||||||||||||    
T  2713454 aaaatctgtataatcattgcattggaatttgtaacatttgacttttt 2713500  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 34233933 - 34233995
Alignment:
Q  135 atagtaaacttttata-aaatatgtataatcaatgcaatgaaatttgtaacatttgacttttt 196  Q
    |||||||| ||||||  |||| ||| ||||||||||| |||||||||||| ||||||||||||    
T  34233933 atagtaaatttttattcaaatttgtgtaatcaatgcattgaaatttgtaatatttgacttttt 34233995  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 37978559 - 37978489
Alignment:
Q  164 caatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaaagtgt 233  Q
    ||||||| | |||||||||| |||||||| ||||||| |||| ||| ||||||| ||||| ||||||||||    
T  37978559 caatgcattaaaatttgtaatatttgacttttttaaagaatattttctaaatttgggatctttaaaagtgt 37978489  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 39445468 - 39445526
Alignment:
Q  160 taatcaatgcaatgaaatttgtaacatttgactttt-taaaaaatactttttaaattta 217  Q
    |||||| |||| |||||||| |||||||| |||||| ||||||||| ||||||||||||    
T  39445468 taatcagtgcattgaaatttctaacatttaacttttttaaaaaatattttttaaattta 39445526  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 815065 - 814996
Alignment:
Q  160 taatcaatgcaatgaaatttgtaacatttga-ctttttaaaaaatactttttaaatttaggatccttaaa 228  Q
    ||||||||||| || ||||||| ||||||||  ||||||||||||| ||| ||||||| |||| ||||||    
T  815065 taatcaatgcattggaatttgtgacatttgatttttttaaaaaataatttctaaatttgggatgcttaaa 814996  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 24733251 - 24733172
Alignment:
Q  150 aaaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaa 228  Q
    ||||| ||| ||||||||||| || |||||||||||||||||| ||||| | |||| ||||||||||| |||||||||||    
T  24733251 aaaatttgtgtaatcaatgcactgtaatttgtaacatttgacttttttagagaatattttttaaatttgggatccttaaa 24733172  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 8674513 - 8674459
Alignment:
Q  175 aatttgtaacatttgacttttt-aaaaaatactttttaaatttaggatccttaaa 228  Q
    |||||||||||||| ||||||| |||||||| ||||||||||| |||||||||||    
T  8674513 aatttgtaacatttaacttttttaaaaaatattttttaaatttgggatccttaaa 8674459  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 44253892 - 44253807
Alignment:
Q  144 ttttataaaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaa 228  Q
    ||||||||||| ||| |||||||||   | |||||| |||||||||||| |||| ||||||| ||||||||||| | |||||||||    
T  44253892 ttttataaaatttgtgtaatcaatgatttaaaatttataacatttgactttttttaaaaatattttttaaatttggaatccttaaa 44253807  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 15353819 - 15353873
Alignment:
Q  172 tgaaatttgtaacatttgactttt-taaaaaatactttttaaatttaggatcctt 225  Q
    |||||||||||| |||| |||||| ||||||||| ||| ||||||||||||||||    
T  15353819 tgaaatttgtaatatttcacttttttaaaaaatattttataaatttaggatcctt 15353873  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 228
Target Start/End: Complemental strand, 46803594 - 46803515
Alignment:
Q  150 aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttt-taaaaaatactttttaaatttaggatccttaaa 228  Q
    ||||||||| ||||||||||| ||||||| ||||| |||||||||| ||||||||||||| ||||||  | |||||||||    
T  46803594 aaaatatgtgtaatcaatgcattgaaattagtaacgtttgacttttataaaaaatactttctaaattaggaatccttaaa 46803515  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 27004060 - 27004130
Alignment:
Q  160 taatcaatgcaatgaaatttgtaacatttgactttt-taaaaaatactttttaaatttaggatccttaaaa 229  Q
    ||||||||||| |||||||  |||||||| |||||| ||||||||| ||||||||||||||||| ||||||    
T  27004060 taatcaatgcattgaaattgataacatttaacttttttaaaaaatattttttaaatttaggatctttaaaa 27004130  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 43024927 - 43025019
Alignment:
Q  138 gtaaacttttat-aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaaa 228  Q
    ||||| |||||| |||||| || |||||| |||| |||||||||||| |||| | ||||| ||| |||| ||||||||| |||||||||||||    
T  43024927 gtaaatttttatgaaaatacgtgtaatcagtgcattgaaatttgtaatatttaatttttttaaataatattttttaaatataggatccttaaa 43025019  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 45775911 - 45775857
Alignment:
Q  175 aatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaaa 228  Q
    ||||||||||||||  |||||||||  |||| |||||||||||||||||||||||    
T  45775911 aatttgtaacatttatctttttaaaggaatattttttaaatttaggatccttaaa 45775857  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 16790297 - 16790350
Alignment:
Q  175 aatttgtaacatttgactttt-taaaaaatactttttaaatttaggatccttaa 227  Q
    ||||| ||||||||||||||| ||||||| | ||| ||||||||||||||||||    
T  16790297 aatttataacatttgacttttttaaaaaagattttctaaatttaggatccttaa 16790350  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 27542933 - 27542860
Alignment:
Q  156 tgtataatcaatgcaatgaaatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaaa 228  Q
    |||||||||||| || || ||| ||||| |||||||||||| ||| |||| ||||||||||| | |||||||||    
T  27542933 tgtataatcaatacattggaatatgtaatatttgacttttttaaagaatattttttaaatttggtatccttaaa 27542860  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 353942 - 354080
Alignment:
Q  92 aaatgttaacgagtacccccatgatactatttaagaagattttatagtaaacttttataaaatatgtata--atcaatgcaatgaaatttgtaacatttg 189  Q
    |||||||||||||| || ||  || ||| |||||||| |||| ||| |||| |||||||||| || |||   |||| | || || ||||||||| |||||    
T  353942 aaatgttaacgagtgccaccgagacactttttaagaacatttaataataaatttttataaaaaatttatgttatcactacattgcaatttgtaatatttg 354041  T
Q  190 actttttaaaaaatactttttaaatttaggatccttaaa 228  Q
    ||||||||||||| |  || ||||||| |||||||||||    
T  354042 actttttaaaaaaaaaattctaaatttgggatccttaaa 354080  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 188
Target Start/End: Original strand, 4806466 - 4806568
Alignment:
Q  87 taggaaaatgttaacgagtacccccatgatactatttaagaagattttatagtaaacttttat-aaaatatgtataatcaatgcaatgaaatttgtaaca 185  Q
    |||| |||||||||||||| || ||  || ||| ||||||||   || |||||||  |||||| ||||||||| ||||||||| | ||||||||||||||    
T  4806466 tagggaaatgttaacgagttcctccgggacactctttaagaaccattaatagtaagtttttatgaaaatatgtgtaatcaatgtattgaaatttgtaaca 4806565  T
Q  186 ttt 188  Q
    |||    
T  4806566 ttt 4806568  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 7341412 - 7341465
Alignment:
Q  175 aatttgtaacatttgacttttt-aaaaaatactttttaaatttaggatccttaa 227  Q
    |||| ||||||||||||||||| |||||||| ||| |||||||| |||||||||    
T  7341412 aattggtaacatttgactttttaaaaaaataatttataaatttaagatccttaa 7341465  T

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