View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12780_low_6 (Length: 383)
Name: NF12780_low_6
Description: NF12780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12780_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 19638040 - 19638402
Alignment:
| Q |
1 |
tttccatgacttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagggaggaacacgcgcgaa |
100 |
Q |
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| T |
19638040 |
tttccatgacttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcgtcagggaggaacacgcgcgaa |
19638139 |
T |
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| Q |
101 |
attctagttccattgaaggtacgccgcaacttaggttgatgatgagcactcatgagatgagagcttcgctttttggaatttttctcacaaagaggattca |
200 |
Q |
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| T |
19638140 |
attctagttccactgaaggtacgccgcaacttaggttgatgatgagcactcatgagatgagagcttcgctttttggattttttctcac--agaggattca |
19638237 |
T |
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| Q |
201 |
tgaggaaggaagaaagggattcggagcttggtgagaaggaagggtatgcctttgggagttgaagatttctaaaccctagtaagtaatacactccttcgat |
300 |
Q |
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| T |
19638238 |
tgaggaaggaagaaagggattcggagcttggtgagaaggaagggtatgcctttgggagtagaagatttctaaaccctaataagtaatacactccttcgat |
19638337 |
T |
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| Q |
301 |
tattagcgattaacaattctgcaaatgcaattttgtaactttaataaggttttgatgcagcaaat |
365 |
Q |
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| T |
19638338 |
tattagcgattaacaattctgcaaatgcaattttgtaactttaataaggttttgatgcagcaaat |
19638402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 19598593 - 19598691
Alignment:
| Q |
1 |
tttccatgacttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagggaggaacacgcgcga |
99 |
Q |
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| T |
19598593 |
tttccatgacttgcagacgcatttgaattgcacaagagaatttacaggaaggaatgataggatttcaacgataagttcatcagggaggaatacgagcga |
19598691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 15572790 - 15572850
Alignment:
| Q |
29 |
cgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagggagga |
89 |
Q |
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| T |
15572790 |
cgcatcagatatttcacttcaaggaacgataggacttccacaataagttcatcagggagga |
15572850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 19610222 - 19610308
Alignment:
| Q |
1 |
tttccatgacttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagggag |
87 |
Q |
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| T |
19610222 |
tttccatgacttgcagacgcacttaaatcgcatcagagatttcaccgggagaaatgacaggacttcggtgattaactcattagggag |
19610308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 29598356 - 29598450
Alignment:
| Q |
1 |
tttccatgacttgcagacacatttgaaacgcatcagatatttcaccgaaaggaatgataggacttccatgattagttcatcagggaggaacacgc |
95 |
Q |
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| T |
29598356 |
tttccatgacttgcacacacaccttagtcgcatcagagattgcacaggaaggaatgaaaggacttctgcgatgagttcatcagggaggaatacgc |
29598450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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