View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12780_low_8 (Length: 261)

Name: NF12780_low_8
Description: NF12780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12780_low_8
NF12780_low_8
[»] chr5 (11 HSPs)
chr5 (90-245)||(41340280-41340434)
chr5 (91-245)||(41341457-41341610)
chr5 (80-245)||(5963684-5963849)
chr5 (90-245)||(34103555-34103710)
chr5 (143-245)||(14168935-14169037)
chr5 (134-245)||(13112538-13112649)
chr5 (134-245)||(13042540-13042651)
chr5 (203-245)||(3294931-3294973)
chr5 (182-245)||(13042713-13042776)
chr5 (182-245)||(13112711-13112774)
chr5 (134-175)||(6500893-6500934)
[»] chr6 (10 HSPs)
chr6 (74-245)||(22605241-22605412)
chr6 (93-241)||(22605025-22605173)
chr6 (128-245)||(21130097-21130214)
chr6 (81-156)||(9362847-9362922)
chr6 (75-245)||(7301569-7301741)
chr6 (134-245)||(11637767-11637878)
chr6 (203-244)||(7301415-7301456)
chr6 (206-245)||(21297251-21297290)
chr6 (89-132)||(21118923-21118966)
chr6 (217-245)||(6250085-6250113)
[»] chr7 (11 HSPs)
chr7 (83-245)||(48071387-48071549)
chr7 (92-245)||(8802205-8802358)
chr7 (74-245)||(27391755-27391925)
chr7 (92-243)||(8802496-8802654)
chr7 (180-245)||(11776439-11776504)
chr7 (134-245)||(21416187-21416298)
chr7 (203-245)||(11776179-11776221)
chr7 (134-175)||(9901714-9901755)
chr7 (134-191)||(34218080-34218137)
chr7 (132-180)||(1085292-1085340)
chr7 (209-245)||(45100185-45100221)
[»] chr3 (20 HSPs)
chr3 (78-245)||(17731894-17732061)
chr3 (78-245)||(19033125-19033292)
chr3 (117-245)||(16870988-16871116)
chr3 (134-245)||(54017594-54017705)
chr3 (78-237)||(23161913-23162072)
chr3 (120-218)||(17735023-17735121)
chr3 (120-218)||(19036292-19036390)
chr3 (149-245)||(43978636-43978732)
chr3 (90-185)||(16869799-16869894)
chr3 (170-244)||(23162187-23162261)
chr3 (99-175)||(16868394-16868470)
chr3 (203-245)||(43481589-43481631)
chr3 (181-245)||(40195913-40195977)
chr3 (134-241)||(48127861-48127968)
chr3 (203-241)||(43978984-43979022)
chr3 (190-245)||(16869614-16869669)
chr3 (172-245)||(23161841-23161913)
chr3 (203-240)||(53981541-53981578)
chr3 (134-178)||(37990685-37990729)
chr3 (92-132)||(40196115-40196155)
[»] chr4 (10 HSPs)
chr4 (93-245)||(1868052-1868204)
chr4 (131-245)||(51681539-51681653)
chr4 (134-245)||(11197227-11197338)
chr4 (76-142)||(16559390-16559456)
chr4 (132-175)||(44621073-44621116)
chr4 (90-244)||(47680623-47680778)
chr4 (203-245)||(10396132-10396174)
chr4 (203-244)||(47681161-47681202)
chr4 (134-178)||(34646693-34646737)
chr4 (134-170)||(45496881-45496917)
[»] chr8 (13 HSPs)
chr8 (121-245)||(12156691-12156815)
chr8 (92-245)||(5981737-5981890)
chr8 (98-245)||(5981451-5981599)
chr8 (123-245)||(14028326-14028448)
chr8 (205-245)||(2954342-2954382)
chr8 (205-245)||(2954625-2954665)
chr8 (75-142)||(2954494-2954562)
chr8 (132-175)||(6876906-6876949)
chr8 (209-238)||(3671262-3671291)
chr8 (180-233)||(4840531-4840584)
chr8 (203-244)||(29103329-29103370)
chr8 (134-178)||(3669755-3669799)
chr8 (134-178)||(34834944-34834988)
[»] scaffold0014 (1 HSPs)
scaffold0014 (95-241)||(197734-197878)
[»] chr1 (13 HSPs)
chr1 (94-244)||(27686529-27686680)
chr1 (93-245)||(4392197-4392349)
chr1 (149-245)||(15327857-15327953)
chr1 (180-245)||(25294879-25294944)
chr1 (92-160)||(25293589-25293657)
chr1 (75-244)||(26231641-26231809)
chr1 (149-245)||(5821727-5821821)
chr1 (203-237)||(4392025-4392059)
chr1 (134-180)||(24600360-24600406)
chr1 (203-245)||(31973450-31973492)
chr1 (134-168)||(39066246-39066280)
chr1 (134-175)||(32594762-32594803)
chr1 (205-245)||(12466284-12466324)
[»] chr2 (5 HSPs)
chr2 (138-245)||(13792544-13792651)
chr2 (134-245)||(28226338-28226449)
chr2 (203-245)||(30219996-30220038)
chr2 (134-170)||(15689445-15689481)
chr2 (181-245)||(35448708-35448772)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 90 - 245
Target Start/End: Complemental strand, 41340434 - 41340280
Alignment:
Q  90 gggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctctta 189  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  41340434 gggagcggcaatgggc-aaacgtccaagaccataagagacttaaacaccacactcttatccaaaatcttaaggcaatgagtgtatgagttccctctctta 41340336  T
Q  190 tatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41340335 tatatcttttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 41340280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 91 - 245
Target Start/End: Complemental strand, 41341610 - 41341457
Alignment:
Q  91 ggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttat 190  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||    
T  41341610 ggagcggcaatgggccaaacgtccaggactataagagacttaaacaccacattcttaccaaaaaccttaaggcaatgagtgtatgggttccctctcttat 41341511  T
Q  191 atatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41341510 atatcctttgtctcctccattcctagtc-atgtgggacataatcactcacacttg 41341457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 80 - 245
Target Start/End: Complemental strand, 5963849 - 5963684
Alignment:
Q  80 ggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgag-tgtatgagt 178  Q
    |||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||| || | || | |||| ||    
T  5963849 ggggagccccgggagcggcaatgggtcaaacgtccaggaccataagagacttaaacaccacactcttacccaaaaccttaaggca-tcagatctatgggt 5963751  T
Q  179 tccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  5963750 tccctctcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcacacacacttg 5963684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 90 - 245
Target Start/End: Complemental strand, 34103710 - 34103555
Alignment:
Q  90 gggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctctta 189  Q
    ||||||||||||||| |||||||| | | |||||||||| |||||||||||| |||||| |||||||||||| |||||||| ||||||||| ||||||||    
T  34103710 gggagcggcaatgggtcaaacgtctaggtccataagagatttaaacaccacactcttattcaaaaccttaaggcaatgagtttatgagttctctctctta 34103611  T
Q  190 tatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    |||||| ||| | ||||||||| ||| ||||||||| |||||||||||||||||||    
T  34103610 tatatcctttatttcctccatttctattcgatgtggaacataatcactcacacttg 34103555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 245
Target Start/End: Complemental strand, 14169037 - 14168935
Alignment:
Q  143 tcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacac 242  Q
    ||||| ||||||| ||||| |||||||  |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||    
T  14169037 tcttacccaaaactttaaggcaatgagcttatgggttccctctcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcccttacac 14168938  T
Q  243 ttg 245  Q
    |||    
T  14168937 ttg 14168935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 13112649 - 13112538
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 233  Q
    |||||||| ||||||||||||||||||||||||| || |||| ||  |||||||||||||||   ||| | ||| ||| ||||||||||||||| || ||    
T  13112649 acaccacactcttatccaaaaccttaagacaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtgggatattat 13112550  T
Q  234 cactcacacttg 245  Q
    ||||||||||||    
T  13112549 cactcacacttg 13112538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 13042651 - 13042540
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 233  Q
    |||||||| ||||||||||||||||||| ||||| || |||| ||  |||||||||||||||   ||| | ||| ||| ||||||||||||||| || ||    
T  13042651 acaccacactcttatccaaaaccttaaggcaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtgggatattat 13042552  T
Q  234 cactcacacttg 245  Q
    ||||||||||||    
T  13042551 cactcacacttg 13042540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 3294931 - 3294973
Alignment:
Q  203 tcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  3294931 tcctccattcctagtcgatatgggacataatcactcacacttg 3294973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 13042776 - 13042713
Alignment:
Q  182 ctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||||||||||   ||| | ||||||| ||||| ||||||| |||||||||||||||||||    
T  13042776 ctctcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttg 13042713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 13112774 - 13112711
Alignment:
Q  182 ctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||||||||||   ||| | ||||||| ||||| ||||||| |||||||||||||||||||    
T  13112774 ctctcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttg 13112711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 6500934 - 6500893
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatg 175  Q
    |||||||| ||||||||||||||||||| |||||||| ||||    
T  6500934 acaccacactcttatccaaaaccttaaggcaatgagtttatg 6500893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 245
Target Start/End: Original strand, 22605241 - 22605412
Alignment:
Q  74 attgttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgta 173  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||    
T  22605241 attgttggggagccccgggagcggcaatgggccaaacgtccaagaccataagagacttaaacaccacattcttacccaaaaccttaaggcaatgggttta 22605340  T
Q  174 tgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    || ||| || |||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  22605341 tgggtttccactcttatatatcctttgtttcctccattcctagtcgatgtggaacataatcactcacacttg 22605412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 93 - 241
Target Start/End: Original strand, 22605025 - 22605173
Alignment:
Q  93 agcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatat 192  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||||| || |||||||||||| ||||||| |||| || ||||  |||||||||||||||    
T  22605025 agcggcaatgggccaaatgtccaagaccataagagagttaaacacctcactcttatccaaaagcttaagaaaatgggtttatggattccctctcttatat 22605124  T
Q  193 atcatttgtctcctccattcctagtcgatgtgggacataatcactcaca 241  Q
    ||| ||||| |||||| ||||||||||||||||||||||||||| ||||    
T  22605125 atcctttgtttcctccgttcctagtcgatgtgggacataatcacccaca 22605173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 21130097 - 21130214
Alignment:
Q  128 acttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtggga 227  Q
    |||||||||||||| ||||||||||||||||||| |||||  | |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  21130097 acttaaacaccacactcttatccaaaaccttaaggcaatggatttatgggttccctctcttatatatcttttgtttcctccattcctagtcgatgtggga 21130196  T
Q  228 cataatcactcacacttg 245  Q
    ||||||||||||||||||    
T  21130197 cataatcactcacacttg 21130214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 9362847 - 9362922
Alignment:
Q  81 gggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaacc 156  Q
    ||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||| | | ||| ||||||||    
T  9362847 gggagccccgggagcggcaatgggacaaacgtccaggaccataagagacttaaacaccatactattacccaaaacc 9362922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 245
Target Start/End: Original strand, 7301569 - 7301741
Alignment:
Q  75 ttgttggggagtccggggagcggcaatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatcc-aaaaccttaagacaatgagtgt 172  Q
    ||||||||||||  |||||||| |||||||| |||| || | ||||| ||||||||||| |||||| | ||||| || |||||||||||| | |  || |    
T  7301569 ttgttggggagtttggggagcgacaatgggctaaacctctaggaccactaagagacttagacaccaaactcttacccaaaaaccttaagatattaggtat 7301668  T
Q  173 atgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||| || |||||| |||||||||     | | |||||||  |||||||||||||||||||| |||||||||||    
T  7301669 atgtgtcccctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttg 7301741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 11637767 - 11637878
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 233  Q
    |||||||| |||||||||||| |||||||||||| || |||| ||  ||||||||||||||    ||| | || || | ||||||||||| |||||| ||    
T  11637767 acaccacactcttatccaaaatcttaagacaatgggtttatgggtatcctctcttatatattcaatgtttgcttcacttctagtcgatgttggacattat 11637866  T
Q  234 cactcacacttg 245  Q
    ||||||||||||    
T  11637867 cactcacacttg 11637878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 7301415 - 7301456
Alignment:
Q  203 tcctccattcctagtcgatgtgggacataatcactcacactt 244  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  7301415 tcctccatttctagtcgatgtgggacataatcactcacactt 7301456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 21297251 - 21297290
Alignment:
Q  206 tccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  21297251 tccattcctagtcgatgtgggacacaatcactcacacttg 21297290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 21118923 - 21118966
Alignment:
Q  89 ggggagcggcaatgggccaaacgtccatgaccataagagactta 132  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||    
T  21118923 ggggagcggcaatgggccagacgtccaggactataagagactta 21118966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 6250113 - 6250085
Alignment:
Q  217 tcgatgtgggacataatcactcacacttg 245  Q
    |||||||||||||||||||||||||||||    
T  6250113 tcgatgtgggacataatcactcacacttg 6250085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 83 - 245
Target Start/End: Complemental strand, 48071549 - 48071387
Alignment:
Q  83 gagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccc 182  Q
    |||||| || ||||||||||||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||||||||||  || |||||||||||    
T  48071549 gagtcccggaagcggcaatgggccaaacgtccaagatcataagagacttaaacatcacactcttatccaaaaccttaagacaataggtttatgagttccc 48071450  T
Q  183 tctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  48071449 tctcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcactgacacttg 48071387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 92 - 245
Target Start/End: Complemental strand, 8802358 - 8802205
Alignment:
Q  92 gagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttata 191  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  |||||  |||||| | |||||||||||| |||| |||||||||||||||    
T  8802358 gagcggcaatgggccaaacgtccaagaccataagagacttaaacaccacgctcttactcaaaacataaagacaatgagtttatgggttccctctcttata 8802259  T
Q  192 tatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    |||| ||||| |||||||||||| ||  |||||| | |||||||||||||||||    
T  8802258 tatcctttgtttcctccattcctcgttaatgtggaatataatcactcacacttg 8802205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 245
Target Start/End: Original strand, 27391755 - 27391925
Alignment:
Q  74 attgttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgta 173  Q
    ||||||||||||| ||||||||||||||| ||||||||| || ||| ||||||||||||||||||||| ||||| | ||||||||||| || ||  | ||    
T  27391755 attgttggggagttcggggagcggcaatgagccaaacgttcaagactataagagacttaaacaccacactcttacctaaaaccttaaggcagtggattta 27391854  T
Q  174 tgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    || ||| | | ||||||||||| ||||  ||||||||||||| | |||||||||||||||||||||||||||    
T  27391855 tgggtttcatgtcttatatatcctttgcttcctccattccta-ttgatgtgggacataatcactcacacttg 27391925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 243
Target Start/End: Complemental strand, 8802654 - 8802496
Alignment:
Q  92 gagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttata 191  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||| ||||| |||| |||||| ||||||||    
T  8802654 gagcggcaatgggtcaaatgtccatgaccataagagacttaaacaccacactcttacccaaaatcttaaaacagtgagtttatgggttccccctcttata 8802555  T
Q  192 tatcatttgtct-cctccat------tcctagtcgatgtgggacataatcactcacact 243  Q
    |||| ||||| | ||||  |      ||||| |||||||||||||||||||||||||||    
T  8802554 tatcctttgtttccctctcttatatatcctaatcgatgtgggacataatcactcacact 8802496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 11776439 - 11776504
Alignment:
Q  180 ccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    |||||||||||||||    ||| ||||||||||||||| |||||||||||||||||||||||||||    
T  11776439 ccctctcttatatattcaatgtttcctccattcctagttgatgtgggacataatcactcacacttg 11776504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 21416187 - 21416298
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 233  Q
    |||||||| ||||| |||||||| |||| ||||| || |||| ||  |||||||||||||||   | | |  |||||  ||||| |||||||||||||||    
T  21416187 acaccacactcttacccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaatttttgttccatgtctagttgatgtgggacataat 21416286  T
Q  234 cactcacacttg 245  Q
    ||||||||||||    
T  21416287 cactcacacttg 21416298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 11776179 - 11776221
Alignment:
Q  203 tcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||||||||||| ||||||||||||||||| |||||||||    
T  11776179 tcctccattcctagttgatgtgggacataatcattcacacttg 11776221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 9901755 - 9901714
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatg 175  Q
    |||||||| ||||| |||||||||||||||||||||| ||||    
T  9901755 acaccacactcttacccaaaaccttaagacaatgagtttatg 9901714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 34218080 - 34218137
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttata 191  Q
    |||||||| ||||| ||||||||||||||||||| || ||||||| | ||| ||||||    
T  34218080 acaccacactcttacccaaaaccttaagacaatgggtttatgagtcctctcacttata 34218137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 1085292 - 1085340
Alignment:
Q  132 aaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttc 180  Q
    |||||||||| ||||| ||||||||||||| |||||||| |||| ||||    
T  1085292 aaacaccacactcttacccaaaaccttaaggcaatgagtttatgggttc 1085340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 45100221 - 45100185
Alignment:
Q  209 attcctagtcgatgtgggacataatcactcacacttg 245  Q
    |||||||||| |||||| |||||||||||||||||||    
T  45100221 attcctagtcaatgtggaacataatcactcacacttg 45100185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 78 - 245
Target Start/End: Original strand, 17731894 - 17732061
Alignment:
Q  78 ttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgag 177  Q
    |||||||| || ||||||||||||||| |||||||  | ||||||||| ||||| ||||||||| |||||  |||||||||||| ||||| || |||| |    
T  17731894 ttggggagccctgggagcggcaatgggtcaaacgtttaagaccataagtgacttgaacaccacactcttactcaaaaccttaaggcaatgggtttatggg 17731993  T
Q  178 ttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17731994 ttccctttcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcactcacacttg 17732061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 78 - 245
Target Start/End: Original strand, 19033125 - 19033292
Alignment:
Q  78 ttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgag 177  Q
    |||||||| || ||||||||||||||| |||||||  | ||||||||| ||||| ||||||||| |||||  |||||||||||| ||||| || |||| |    
T  19033125 ttggggagccctgggagcggcaatgggtcaaacgtttaagaccataagtgacttgaacaccacactcttactcaaaaccttaaggcaatgggtttatggg 19033224  T
Q  178 ttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19033225 ttccctttcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcactcacacttg 19033292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 117 - 245
Target Start/End: Original strand, 16870988 - 16871116
Alignment:
Q  117 gaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctag 216  Q
    ||||||||||||||||||||| ||| ||||| | ||||||||||| |||||||| |||| ||||||||||||||||||  ||||| ||||||||||| |     
T  16870988 gaccataagagacttaaacacgacactcttacctaaaaccttaaggcaatgagtttatgggttccctctcttatatattctttgtttcctccattccaaa 16871087  T
Q  217 tcgatgtgggacataatcactcacacttg 245  Q
    |||||||||||||||||||||||||||||    
T  16871088 tcgatgtgggacataatcactcacacttg 16871116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 54017594 - 54017705
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 233  Q
    |||||||| ||||| ||||||||||||| ||||| || ||||  |||||||||||||||||| ||||| || ||||||||||||||||||| ||||||||    
T  54017594 acaccacactcttacccaaaaccttaaggcaatgggtttatggattccctctcttatatatcctttgtttcttccattcctagtcgatgtgagacataat 54017693  T
Q  234 cactcacacttg 245  Q
    ||||||||||||    
T  54017694 cactcacacttg 54017705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 78 - 237
Target Start/End: Complemental strand, 23162072 - 23161913
Alignment:
Q  78 ttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgag 177  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||||||    | |||||| |||||| ||  | || ||||||    
T  23162072 ttggggagtccggggagcgacaatgggccaaacgtccaggaccataagaaaattaaacaccacatctccacccaaaatcttaaggcatcgggtatatgag 23161973  T
Q  178 ttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcact 237  Q
    |  |||||||||||||||   ||| |||||||||| |||||||||  |||||||||||||    
T  23161972 tcacctctcttatatatctaatgtttcctccattcttagtcgatgcaggacataatcact 23161913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 17735023 - 17735121
Alignment:
Q  120 cataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtc 218  Q
    ||||||||||||||||||| || ||||| ||||||||||||| |||||||| |||| ||||||||||||||||||| ||||  ||||||||||||||||    
T  17735023 cataagagacttaaacaccgcactcttacccaaaaccttaagtcaatgagtttatgggttccctctcttatatatcttttggttcctccattcctagtc 17735121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 19036292 - 19036390
Alignment:
Q  120 cataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtc 218  Q
    ||||||||||||||||||| || ||||| ||||||||||||| |||||||| |||| ||||||||||||||||||| ||||  ||||||||||||||||    
T  19036292 cataagagacttaaacaccgcactcttacccaaaaccttaagtcaatgagtttatgggttccctctcttatatatcttttggttcctccattcctagtc 19036390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 43978636 - 43978732
Alignment:
Q  149 ccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||||||||| ||||  || |||||||  |||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||||||    
T  43978636 ccaaaaccttaaggcaataggtatatgagtctcctctcttatatatccaatgtttcctccattcctagtcgatgtgggacataatcactcacacttg 43978732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 185
Target Start/End: Original strand, 16869799 - 16869894
Alignment:
Q  90 gggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctct 185  Q
    ||||||||||||| || |||  |||| |||| |||||||||||||||||||| ||||   |||||||||||| |||||||| |||| |||||||||    
T  16869799 gggagcggcaatgtgctaaatatccacgaccttaagagacttaaacaccacactcttgctcaaaaccttaaggcaatgagtttatgtgttccctct 16869894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 23162261 - 23162187
Alignment:
Q  170 tgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacactt 244  Q
    ||||||||| ||||||||||||| ||    || ||||||||||||| ||||||||||||||||||||||||||||    
T  23162261 tgtatgagtcccctctcttatatgtccaacgtttcctccattcctaatcgatgtgggacataatcactcacactt 23162187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 16868394 - 16868470
Alignment:
Q  99 aatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatg 175  Q
    |||||||||||||| ||  || |||||||||||||||| |||| |||||||||||| |||||| |||||||| ||||    
T  16868394 aatgggccaaacgttcagaactataagagacttaaacatcacactcttatccaaaatcttaaggcaatgagtttatg 16868470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 43481631 - 43481589
Alignment:
Q  203 tcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  43481631 tcctccattcctagtcgatgtgagacataatcactcacacttg 43481589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 40195913 - 40195977
Alignment:
Q  181 cctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    |||||||||||||||    || ||||||||||||||||||||||  |||||||||||||||||||    
T  40195913 cctctcttatatatccaacgtttcctccattcctagtcgatgtgaaacataatcactcacacttg 40195977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 48127861 - 48127968
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 233  Q
    |||||||| ||||||||||||| ||||  ||||| || |||| ||  ||||||||||||||||   || ||| |||||  |||| |||||| ||||||||    
T  48127861 acaccacactcttatccaaaacattaaagcaatgggtttatgggtctcctctcttatatatcaaacgtttccaccatttatagttgatgtgtgacataat 48127960  T
Q  234 cactcaca 241  Q
    ||||||||    
T  48127961 cactcaca 48127968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 43978984 - 43979022
Alignment:
Q  203 tcctccattcctagtcgatgtgggacataatcactcaca 241  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  43978984 tcctccattcttagtcgatgtgggacataatcactcaca 43979022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 16869614 - 16869669
Alignment:
Q  190 tatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    |||||| ||||| ||||| ||||||| ||||  |||||||||||||||||||||||    
T  16869614 tatatcctttgtttcctctattcctaatcgacatgggacataatcactcacacttg 16869669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 23161913 - 23161841
Alignment:
Q  172 tatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    |||||||  |||||||||||||||   | | ||||| |||| |||||||||||| |||||||||||||||||||    
T  23161913 tatgagtcacctctcttatatatctaatatttcctctattcttagtcgatgtgg-acataatcactcacacttg 23161841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 53981578 - 53981541
Alignment:
Q  203 tcctccattcctagtcgatgtgggacataatcactcac 240  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  53981578 tcctccatttctagtcgatgtgggacttaatcactcac 53981541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 37990685 - 37990729
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatgagt 178  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||||    
T  37990685 acaccacactcttacccaaaaccttaaggcaatgagtttatgagt 37990729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 40196115 - 40196155
Alignment:
Q  92 gagcggcaatgggccaaacgtccatgaccataagagactta 132  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  40196115 gagcggcaatgggccaaacatctaagaccataagagactta 40196155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 93 - 245
Target Start/End: Complemental strand, 1868204 - 1868052
Alignment:
Q  93 agcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatat 192  Q
    ||||||||||||||||||||||| || |||||||||||||| ||  ||| ||||| ||||||| ||||| ||||| || |||| ||||||||||||||||    
T  1868204 agcggcaatgggccaaacgtccaggatcataagagacttaatcataacactcttacccaaaactttaaggcaatgggtttatgggttccctctcttatat 1868105  T
Q  193 atcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||| | |||||||||| ||||||||||||||||||||||||||||||||    
T  1868104 atcatttatttcctccattcttagtcgatgtgggacataatcactcacacttg 1868052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 245
Target Start/End: Complemental strand, 51681653 - 51681539
Alignment:
Q  131 taaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacat 230  Q
    ||||||||||| ||||| |||||| |||||| ||||| || ||||||| |||||||||||||||      | ||||| |||||||||| |||||||||||    
T  51681653 taaacaccacactcttacccaaaatcttaaggcaatgggtatatgagtcccctctcttatatatttcacatttcctcaattcctagtcaatgtgggacat 51681554  T
Q  231 aatcactcacacttg 245  Q
    ||||||| |||||||    
T  51681553 aatcacttacacttg 51681539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 11197338 - 11197227
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 233  Q
    |||||||| ||||| |||||||| |||| ||||| || |||| ||  |||||||||||||||    || ||||||||| |||||||||||| | ||||||    
T  11197338 acaccacactcttacccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgaggcataat 11197239  T
Q  234 cactcacacttg 245  Q
    ||||||||||||    
T  11197238 cactcacacttg 11197227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 16559456 - 16559390
Alignment:
Q  76 tgttggggagtccggggagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacat 142  Q
    |||||||||||||||||||||||||||| ||||||||  | ||  |||||||||||| |||||||||    
T  16559456 tgttggggagtccggggagcggcaatggaccaaacgtttaggattataagagacttagacaccacat 16559390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 44621116 - 44621073
Alignment:
Q  132 aaacaccacattcttatccaaaaccttaagacaatgagtgtatg 175  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||    
T  44621116 aaacaccacactcttacccaaaaccttaagacaatgagtttatg 44621073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 244
Target Start/End: Complemental strand, 47680778 - 47680623
Alignment:
Q  90 gggagcggcaatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctctt 188  Q
    ||||||| ||||| |  ||||||||| ||||| ||||||||||| |||||||||    | ||||||||||||| ||    || |||| ||  |||||| |    
T  47680778 gggagcgacaatgagttaaacgtccaggaccaataagagacttagacaccacatctccacccaaaaccttaaggcatcaggtatatgggtctcctctcat 47680679  T
Q  189 atatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacactt 244  Q
    ||||||    ||| |||||||||  || ||||||||||||||||||||||||||||    
T  47680678 atatattcaatgtttcctccatttataatcgatgtgggacataatcactcacactt 47680623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 10396174 - 10396132
Alignment:
Q  203 tcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||||| || ||||||||| ||||||||||||||||||||    
T  10396174 tcctccatttcttgtcgatgtgagacataatcactcacacttg 10396132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 47681202 - 47681161
Alignment:
Q  203 tcctccattcctagtcgatgtgggacataatcactcacactt 244  Q
    ||||||||| ||| |||||| |||||||||||||||||||||    
T  47681202 tcctccatttctaatcgatgcgggacataatcactcacactt 47681161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 34646693 - 34646737
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatgagt 178  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||||    
T  34646693 acaccacactcttacccaaaaccttaaggcaatgagtttatgagt 34646737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 45496917 - 45496881
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagt 170  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  45496917 acaccacactcttacccaaaaccttaagacaatgagt 45496881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 12156691 - 12156815
Alignment:
Q  121 ataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcga 220  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||| || |||||||||  ||||||||||||| ||||| ||||||||||||| ||||    
T  12156691 ataagagacttaaacatcacactcttacccaaaaccttaagacaatgggtttatgagttctttctcttatatatcttttgtttcctccattcctaatcga 12156790  T
Q  221 tgtgggacataatcactcacacttg 245  Q
    |||||||||||||||||||||||||    
T  12156791 tgtgggacataatcactcacacttg 12156815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 5981737 - 5981890
Alignment:
Q  92 gagcggcaatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttat 190  Q
    |||||||||||||| |||| || | ||||| ||||||||||| |||||||||    | ||||||||||||| ||||| || |||| || |||||||||||    
T  5981737 gagcggcaatgggctaaacttcaaggaccagtaagagacttagacaccacatctccacccaaaaccttaaggcaatg-gtttatgggtcccctctcttat 5981835  T
Q  191 atatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    |||||    || ||||||||||||| | |||||||||||||||| ||||||||||    
T  5981836 atatccaacgtttcctccattcctaattgatgtgggacataatccctcacacttg 5981890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 245
Target Start/End: Original strand, 5981451 - 5981599
Alignment:
Q  98 caatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatca 196  Q
    |||||||| |||||||||  |||| ||||||||||| ||||||||||   | ||||||||||||| ||    ||  ||| || ||||||||||||||||     
T  5981451 caatgggctaaacgtccagaaccaataagagacttagacaccacatttccacccaaaaccttaaggcatcaggtacatgggtcccctctcttatatatcc 5981550  T
Q  197 tttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
       || | |||||||||||||||||||||||||||||||||||||||||    
T  5981551 aacgttttctccattcctagtcgatgtgggacataatcactcacacttg 5981599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 14028448 - 14028326
Alignment:
Q  123 aagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatg 222  Q
    |||||||||  ||||  |||||||||||||||  ||||| ||   ||| |||||||   ||||||||||||||   ||| ||||| ||||||||||||||    
T  14028448 aagagacttggacactgcattcttatccaaaattttaaggcatcaagtatatgagtctgctctcttatatatccaatgtttcctctattcctagtcgatg 14028349  T
Q  223 tgggacataatcactcacacttg 245  Q
    | |||||||||||||||||||||    
T  14028348 taggacataatcactcacacttg 14028326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 2954342 - 2954382
Alignment:
Q  205 ctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  2954342 ctccattcctagtcgatgtgggaaataatcactcacacttg 2954382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 2954625 - 2954665
Alignment:
Q  205 ctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  2954625 ctccattcctagtctatgtgggacataatcactcacacttg 2954665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 2954494 - 2954562
Alignment:
Q  75 ttgttggggagtccggggagcggcaatgggccaaacgtccatgacc-ataagagacttaaacaccacat 142  Q
    |||||||| || || ||||||||||||||| |||||||||| |||| |||||||||||| || ||||||    
T  2954494 ttgttgggaagccccgggagcggcaatgggtcaaacgtccaggaccaataagagacttagacgccacat 2954562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 6876906 - 6876949
Alignment:
Q  132 aaacaccacattcttatccaaaaccttaagacaatgagtgtatg 175  Q
    |||||||||| ||||| |||||||| ||||||||||||||||||    
T  6876906 aaacaccacactcttacccaaaaccctaagacaatgagtgtatg 6876949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 3671262 - 3671291
Alignment:
Q  209 attcctagtcgatgtgggacataatcactc 238  Q
    ||||||||||||||||||||||||||||||    
T  3671262 attcctagtcgatgtgggacataatcactc 3671291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 4840584 - 4840531
Alignment:
Q  180 ccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 233  Q
    ||||||||||||||||   ||| |||||||||| || |||||||||||||||||    
T  4840584 ccctctcttatatatccaatgtttcctccattcatattcgatgtgggacataat 4840531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 29103329 - 29103370
Alignment:
Q  203 tcctccattcctagtcgatgtgggacataatcactcacactt 244  Q
    |||||||||||||||||||||| ||||| || ||||||||||    
T  29103329 tcctccattcctagtcgatgtgagacatgattactcacactt 29103370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 3669799 - 3669755
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatgagt 178  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||||    
T  3669799 acaccacactcttacccaaaaccttaaggcaatgagtttatgagt 3669755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 34834988 - 34834944
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatgagt 178  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||||    
T  34834988 acaccacactcttacccaaaaccttaaggcaatgagtttatgagt 34834944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 197878 - 197734
Alignment:
Q  95 cggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatat 194  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||  || |||||| |||||  | ||||  |||||||||||||||||    
T  197878 cggcaatgagccaaacgtccaggaccataagagacttaaacaccacactcttatcc--aatcttaaggcaatggatttatggattccctctcttatatat 197781  T
Q  195 catttgtctcctccattcctagtcgatgtgggacataatcactcaca 241  Q
    | ||||| ||  | |||| |||||||| |||| ||||||||||||||    
T  197780 cctttgtttctgctattcttagtcgatatgggtcataatcactcaca 197734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 244
Target Start/End: Original strand, 27686529 - 27686680
Alignment:
Q  94 gcggcaatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatat 192  Q
    |||||||||| | ||| ||||| ||||| ||||||||||| |||||||| ||||| ||||||||| ||| |||   |  ||||||||  |||||||||||    
T  27686529 gcggcaatggactaaatgtccaagaccaataagagacttagacaccacactcttacccaaaacctcaagtcaacagggatatgagttttctctcttatat 27686628  T
Q  193 atcatttgtctcctccattcctagtcgatgtgggacataatcactcacactt 244  Q
    |||   ||| ||||||||||||||||||||||| ||||||||||||||||||    
T  27686629 atctaatgtttcctccattcctagtcgatgtggaacataatcactcacactt 27686680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 245
Target Start/End: Original strand, 4392197 - 4392349
Alignment:
Q  93 agcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatat 192  Q
    |||||||||||| |||||||| | |||||||||  ||||| |||||||||    |||||||| |||||| ||    || |||| ||  ||||| ||||||    
T  4392197 agcggcaatgggtcaaacgtcaaggaccataagtcacttatacaccacatctccatccaaaatcttaaggcatcaggtatatgggtctcctctgttatat 4392296  T
Q  193 atcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    |||   ||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  4392297 atccaatgtttcctccattcatagtcgatgtgagacataatcactcacacttg 4392349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 15327953 - 15327857
Alignment:
Q  149 ccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||||| |||||||   || |||| || ||||||||||||||||    || |||||||||||||||||||||| ||||||||||||||||||||    
T  15327953 ccaaaacctcaagacaacaggtatatgggtcccctctcttatatatctaacgtttcctccattcctagtcgatgtgagacataatcactcacacttg 15327857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 25294879 - 25294944
Alignment:
Q  180 ccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||||||||||||   ||| |||||||||||||| | ||||||||||||||||||||||||||    
T  25294879 ccctctcttatatatccaatgtttcctccattcctagccaatgtgggacataatcactcacacttg 25294944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 25293589 - 25293657
Alignment:
Q  92 gagcggcaatgggccaaacgtccatgaccataagagacttaaacaccacattcttatccaaaaccttaa 160  Q
    ||||||||||||| ||||| | || ||||||||||||||| ||||||||| ||||| ||||||||||||    
T  25293589 gagcggcaatgggtcaaacatacaggaccataagagacttgaacaccacactcttacccaaaaccttaa 25293657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 244
Target Start/End: Original strand, 26231641 - 26231809
Alignment:
Q  75 ttgttggggagtccggggagcggcaatgggccaaacgtccatgacca-taagagacttaaacaccacattcttatccaaaaccttaagacaatgagtgta 173  Q
    ||||||||||||||||  ||||||||||||| ||||||    ||||| ||||||||||  |||||||||    | |||||||||||||  |||  || ||    
T  26231641 ttgttggggagtccggaaagcggcaatgggctaaacgttatggaccactaagagacttggacaccacatctccacccaaaaccttaaggtaattggtata 26231740  T
Q  174 tgagttccctctcttatatat--catttgtctcctccattcctagtcgatgtgggacataatcactcacactt 244  Q
    || || |||||||||||||||  ||||    ||||| ||||||| ||||||||||||||||| ||| ||||||    
T  26231741 tgggtcccctctcttatatataacatt----tcctcaattcctaatcgatgtgggacataattacttacactt 26231809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 5821821 - 5821727
Alignment:
Q  149 ccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||||||||| |||||  |||||||||   ||||||||||||||   ||| ||||||||||    |||||||| ||||||||||||||||||||    
T  5821821 ccaaaaccttaaggcaatg--tgtatgagtcttctctcttatatatccaatgtttcctccattctcgatcgatgtgagacataatcactcacacttg 5821727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 4392025 - 4392059
Alignment:
Q  203 tcctccattcctagtcgatgtgggacataatcact 237  Q
    ||||||||||||| |||||||||||||||||||||    
T  4392025 tcctccattcctactcgatgtgggacataatcact 4392059  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 24600360 - 24600406
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttc 180  Q
    |||||||| |||||  ||||||||||||||||||||| |||||||||    
T  24600360 acaccacactcttacacaaaaccttaagacaatgagtttatgagttc 24600406  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 31973450 - 31973492
Alignment:
Q  203 tcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||    
T  31973450 tcctccatttctagtcggtgtgagacataatcactcacacttg 31973492  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 39066246 - 39066280
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatga 168  Q
    |||||||| ||||||||||||||||||||||||||    
T  39066246 acaccacactcttatccaaaaccttaagacaatga 39066280  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 32594762 - 32594803
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatg 175  Q
    |||||||| ||||| |||||||||||||||||||||| ||||    
T  32594762 acaccacactcttacccaaaaccttaagacaatgagtttatg 32594803  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 12466324 - 12466284
Alignment:
Q  205 ctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||| ||||| ||||||||||||||||||| |||||||    
T  12466324 ctccatttctagttgatgtgggacataatcacttacacttg 12466284  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 13792544 - 13792651
Alignment:
Q  138 cacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcact 237  Q
    |||| ||||| ||||||||| ||| ||||| ||||| | ||  ||||||||||||||||  | | ||||||||| ||||| |||||||||||||||||||    
T  13792544 cacactcttacccaaaacctcaagtcaatgggtgtacgggtctcctctcttatatatcaaatatttcctccatttctagttgatgtgggacataatcact 13792643  T
Q  238 cacacttg 245  Q
    ||||||||    
T  13792644 cacacttg 13792651  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 28226449 - 28226338
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagtgtatgagttccctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataat 233  Q
    |||||||| ||||| | |||||| |||||||||| || |||| ||  |||||||||||||||    || ||||||||| |||||||||||||||||| |     
T  28226449 acaccacactcttacctaaaaccctaagacaatgtgtttatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgggacattaa 28226350  T
Q  234 cactcacacttg 245  Q
    ||||||||||||    
T  28226349 cactcacacttg 28226338  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 30219996 - 30220038
Alignment:
Q  203 tcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||| | |||||||||||||||||||||| ||||||||||    
T  30219996 tcctccagttctagtcgatgtgggacataatcgctcacacttg 30220038  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 15689445 - 15689481
Alignment:
Q  134 acaccacattcttatccaaaaccttaagacaatgagt 170  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  15689445 acaccacatttttacccaaaaccttaagacaatgagt 15689481  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 35448708 - 35448772
Alignment:
Q  181 cctctcttatatatcatttgtctcctccattcctagtcgatgtgggacataatcactcacacttg 245  Q
    ||||||||||||||||   || ||||| ||| |||||||||||| ||||||||||  ||||||||    
T  35448708 cctctcttatatatcaaacgtttcctctatttctagtcgatgtgagacataatcatacacacttg 35448772  T

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