View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12780_low_9 (Length: 246)
Name: NF12780_low_9
Description: NF12780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12780_low_9 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 3075667 - 3075432
Alignment:
| Q |
13 |
agaacagataatggattagagttctgcagtggtgactttaacaagttctgctcaaatcatggtattgctagacacaa--ccattccgaggaatccccagc |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
3075667 |
agaacatataatggattagagttctgcagtggtgactttaacgagttctgctgaaatcatggtattgctagacacaaaaccatcccgaggaatccccagc |
3075568 |
T |
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| Q |
111 |
aaaacggtgttgcagaacgaatgaacagaactctacttgagagagctcggtgtatgctctcaaatgctgggttatggcatcgacgtgatctttgggccga |
210 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3075567 |
aaaacggtgttgcaaaacgaatgaacagaactctacttgagagaactcggtgtatgctctcaaatgctgggttatggcatcgacgtgatctttgggccga |
3075468 |
T |
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| Q |
211 |
ggcagcatctactgcatgttacttggtcaaccgttc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
3075467 |
ggcagcatctactgcatgttacttggtcaaccgttc |
3075432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 29472841 - 29473073
Alignment:
| Q |
16 |
acagataatggattagagttctgcagtggtgactttaacaagttctgctcaaatcatggtattgctagacacaa--ccattccgaggaatccccagcaaa |
113 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
29472841 |
acagataatggattagagttctgcattggtgactttaacgagttctactcaaatcatggtattgctagacacaaaaccattccgaggaatccctagcaaa |
29472940 |
T |
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| Q |
114 |
acggtgttgcagaacgaatgaacagaactctacttgagagagctcggtgtatgctctcaaatgctgggttatggcatcgacgtgatctttgggccgaggc |
213 |
Q |
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| T |
29472941 |
acggtgttgcagaacgaatgaacaggactctacttgagagagctcggtgtatgctctcaaatgcttggttatggcatcggcgtgatctttgggccgaggc |
29473040 |
T |
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| Q |
214 |
agcatctactgcatgttacttggtcaaccgttc |
246 |
Q |
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| T |
29473041 |
agcatctactgcatgttacttggtcaaccgttc |
29473073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 23045538 - 23045773
Alignment:
| Q |
13 |
agaacagataatggattagagttctgcagtggtgactttaacaagttctgctcaaatcatggtattgctagacacaa--ccattccgaggaatccccagc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
23045538 |
agaacagataatggattagagttctgcagtggtgactttaacgagttctgctcaaatcatggtattgctagacacaaaaccattatgaggaatccccagc |
23045637 |
T |
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| Q |
111 |
aaaacggtgttgcagaacgaatgaacagaactctacttgagagagctcggtgtatgctctcaaatgctgggttatggcatcgacgtgatctttgggccga |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
23045638 |
aaaacggtgttgcataacgaatgaacagaactctacttgagagagcttgatgtatgctctcaaatgttgggttatggcatcgacgtgatctttgagccga |
23045737 |
T |
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| Q |
211 |
ggcagcatctactgcatgttacttggtcaaccgttc |
246 |
Q |
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| T |
23045738 |
ggcagcatctactgcatgttacttggtcaaccgttc |
23045773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 15239879 - 15239646
Alignment:
| Q |
15 |
aacagataatggattagagttctgcagtggtgactttaacaagttctgctcaaatcatggtattgctagacacaa--ccattccgaggaatccccagcaa |
112 |
Q |
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|||||||||| ||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| ||| |
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| T |
15239879 |
aacagataattgattagagttctgtagtagtgactttaatgagttctgcacaaatcatggtattgctagacacaaaaccattccaaggaatccccaacaa |
15239780 |
T |
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| Q |
113 |
aacggtgttgcagaacgaatgaacagaactctacttgagagagctcggtgtatgctctcaaatgctgggttatggcatcgacgtgatctttgggccgagg |
212 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| | || ||||||||||||||| ||||| |
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| T |
15239779 |
aacggtgttgcagaacgaatgatcaggactctacttgagagagctcgatgtatgctctcaaatgctgggttatagaattgacgtgatctttgggtcgagg |
15239680 |
T |
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| Q |
213 |
cagcatctactgcatgttacttggtcaaccgttc |
246 |
Q |
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| T |
15239679 |
cagcatctactgcatgtcacttggtcaaccgttc |
15239646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 30048207 - 30048239
Alignment:
| Q |
152 |
agagctcggtgtatgctctcaaatgctgggtta |
184 |
Q |
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| T |
30048207 |
agagctcggtgtatgctctcgaatgctgggtta |
30048239 |
T |
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