View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12781_high_1 (Length: 511)
Name: NF12781_high_1
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12781_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 13 - 493
Target Start/End: Complemental strand, 13299820 - 13299341
Alignment:
| Q |
13 |
agcagagatctataatattatttaaatcaacatagatattctaatctaactaagcaccttcttccctttcatccaatacctttctgcttataaaactttc |
112 |
Q |
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| T |
13299820 |
agcagtgatctataatattatttaaatcaacatagatattctaatctaactaagcaccttcttccctttcacccaatacctttctgcttataaaactttc |
13299721 |
T |
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| Q |
113 |
tctttgcatcttacaactca--aaatggaaactcttcttcctgcaccaacaatcactctcactcatctttaatcaatattaaccaagtaagattcttaag |
210 |
Q |
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| T |
13299720 |
tctt-gcatcttacaactcacaaaatggaaactcttcttcctgcaccatcaatcaccctcactcatctttaatcaatattaaccaagtaagattcttaag |
13299622 |
T |
|
| Q |
211 |
cttgtgttttattttcannnnnnnnnnctatttatacataaagtcaaagaaattatctaactgtttaattaacaaaccctagctagggacataaattaac |
310 |
Q |
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| T |
13299621 |
cttgtgttttattttcatttttttt--ctatttatacataaagtcaaagaaattatctaactgtttaattaacaaaccctagctagggacataaattaac |
13299524 |
T |
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| Q |
311 |
taaggtgaaaattaagaatgggaagagggaagattgtgattcgaaggatcgacaactgtacaagcaggcaagtgactttctcaaagaggagaaagggatt |
410 |
Q |
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| T |
13299523 |
taaggtgaaaattaagaatgggaagagggaagattgtgattcgaaggatcgacaactgtacaagcaggcaagtgactttctcaaagaggagaaagggatt |
13299424 |
T |
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| Q |
411 |
gatcaagaaagccaaagaattagcaatcctatgtgatgcacaagttggacttgttatattttccagcacgggaaagctgtatg |
493 |
Q |
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| T |
13299423 |
gatcaagaaagccaaagaattagcaatcctatgtgatgcacaagttggacttgttatattttccagcacgggaaagctgtatg |
13299341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 328 - 459
Target Start/End: Complemental strand, 36925793 - 36925662
Alignment:
| Q |
328 |
atgggaagagggaagattgtgattcgaaggatcgacaactgtacaagcaggcaagtgactttctcaaagaggagaaagggattgatcaagaaagccaaag |
427 |
Q |
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||||||||||| |||||||||||||||||||| || || | |||||| | |||||||||||||||||||| ||||| || ||||| |||||||| |||| |
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| T |
36925793 |
atgggaagaggaaagattgtgattcgaaggattgagaatttgacaagccgtcaagtgactttctcaaagagaagaaaagggttgatgaagaaagctaaag |
36925694 |
T |
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| Q |
428 |
aattagcaatcctatgtgatgcacaagttgga |
459 |
Q |
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| T |
36925693 |
aactatccattctttgtgatgcacaagttgga |
36925662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 328 - 493
Target Start/End: Original strand, 2115220 - 2115385
Alignment:
| Q |
328 |
atgggaagagggaagattgtgattcgaaggatcgacaactgtacaagcaggcaagtgactttctcaaagaggagaaagggattgatcaagaaagccaaag |
427 |
Q |
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||||||||||| ||||||| ||| ||||||| ||||| | |||||||||||||||||||||||||| || ||||| |||||| | |||||||| |||| |
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| T |
2115220 |
atgggaagaggaaagattgcaattagaaggattgacaattcaacaagcaggcaagtgactttctcaaaaagaagaaatggattgttgaagaaagcaaaag |
2115319 |
T |
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| Q |
428 |
aattagcaatcctatgtgatgcacaagttggacttgttatattttccagcacgggaaagctgtatg |
493 |
Q |
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||||| | || || |||||||| |||||||| | || | ||||||||||| |||||||| |||| |
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| T |
2115320 |
aattatccattctttgtgatgctgaagttggattgattgtcttttccagcactggaaagctttatg |
2115385 |
T |
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