View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12781_high_12 (Length: 361)
Name: NF12781_high_12
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12781_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 12 - 350
Target Start/End: Original strand, 34927697 - 34928035
Alignment:
| Q |
12 |
atgaatatcatgctaaacagaaaacttgaagatggtgtagttatttgttgagcacacgcatcaggctcaagatgaagaaaatgaataaatgaatccagaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34927697 |
atgaatatcatgctaaacagaaaacttgaagatggtgtagttatttgttgagcacacacatcaggctcaagatgaagaaaatgaataaatgaatccagaa |
34927796 |
T |
|
| Q |
112 |
aaaagaatttacatttcaaagaatttatcaagaacttttgcatatattgtaatggatgacaaataaactagttagtgattgaacaaaaatcacttaaatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34927797 |
aaaagaatttacatttcaaagaatttatcaagaacttttgcatatattgtaatggatgacaaataaactagttagtgattgaacaaaaatcacttaaatt |
34927896 |
T |
|
| Q |
212 |
acatatccaagagaaactcaaagatagtcaacaaacacttcagaagaagagtagaattaaatactctcctcaagattcaaaactacccttttctctatat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34927897 |
acatatccaagagaaactcaaagatagtcaacaaacacttcacaagaagagtagaattaaatactctcctcaagattcaaaactacccttttctctatat |
34927996 |
T |
|
| Q |
312 |
tgcaagagaaaccctccatatgctatcaaaagaacccaa |
350 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
34927997 |
tacaatagaaaccctccatatgctatcaaaagaaaccaa |
34928035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University