View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12781_high_14 (Length: 336)
Name: NF12781_high_14
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12781_high_14 |
 | |
|
| [»] scaffold0011 (2 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 16726240 - 16726563
Alignment:
| Q |
1 |
aatcatgatcaattttttcccattgaggagaatctgcaggatgtcgaagcattccatctgcaacccttccatattcatgccatgtcaagtgctttgcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16726240 |
aatcatgatcaattttttcccattgaggagaatctgcaggatgtcgaagcattccatctgcaacccttccatattcatgccatgtcaagtgctttgcatc |
16726339 |
T |
|
| Q |
101 |
ttctgcattacgatacatgcgcctaaatcttggtattatcggaaagtaccatagtactttggctggggctgtttctttcttattatatcgtgatgcaccg |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16726340 |
ttctgcattaagatacatgcgcctaaatcttggtactattggaaagtaccatagcactttggctggggctgtttctttcttattatatcgtgatgcaccg |
16726439 |
T |
|
| Q |
201 |
catttaggacacttatctaatgatgcatactcatttcgaaataaaatacaatctttaggacaagcatgtatcttctcataactcatgccaatagaacgta |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16726440 |
catttagcacacttatctaatgatgcatactcatttcgaaataaaatgcaatctttaggacaagcatgtatcttctcataactcatgccaatagaacgta |
16726539 |
T |
|
| Q |
301 |
acatctgtttagcctcacaggttc |
324 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
16726540 |
acatctgtttagcctcataggttc |
16726563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 292
Target Start/End: Original strand, 14653044 - 14653135
Alignment:
| Q |
201 |
catttaggacacttatctaatgatgcatactcatttcgaaataaaatacaatctttaggacaagcatgtatcttctcataactcatgccaat |
292 |
Q |
| |
|
||||||||||||| || ||| |||| || ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
14653044 |
catttaggacactcatttaacaatgcgtattcatttcgaaacaaaatgcaatcgttaggacaagcgtgtatcttttcataactcatgccaat |
14653135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 292
Target Start/End: Complemental strand, 12760158 - 12760067
Alignment:
| Q |
201 |
catttaggacacttatctaatgatgcatactcatttcgaaataaaatacaatctttaggacaagcatgtatcttctcataactcatgccaat |
292 |
Q |
| |
|
||||||||||||| |||||| ||||| || ||||||| ||| | ||| ||||| ||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
12760158 |
catttaggacactcatctaacgatgcgtattcatttcaaaacagaatgcaatcgttaggacaagcgtgtattttttcataactcatgccaat |
12760067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 14652847 - 14652999
Alignment:
| Q |
1 |
aatcatgatcaattttttcccattgaggagaatctgcaggatgtcgaagcattccatctgcaacccttccatattcatgccatgtcaagtgctttgcatc |
100 |
Q |
| |
|
|||||||||||||||| |||| || || ||||||||||| || |||| | | |||||| || || |||||| ||||||||||| || |||||||| |
|
|
| T |
14652847 |
aatcatgatcaattttagcccactgtggcgaatctgcagggtgccgaaacttcccatctctaattctatcatatttgtgccatgtcaaatgttttgcatc |
14652946 |
T |
|
| Q |
101 |
ttctgcattacgatacatgcgcctaaatcttggtattatcggaaagtaccata |
153 |
Q |
| |
|
|| || ||| | |||||||||| ||||| |||||||| |||| ||||||| |
|
|
| T |
14652947 |
aacttcactactaaacatgcgcctgaatctcggtattataggaagataccata |
14652999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 324
Target Start/End: Complemental strand, 137795 - 137474
Alignment:
| Q |
3 |
tcatgatcaattttttcccattgaggagaatctgcaggatgtcgaagcattccatctgcaacccttccatattcatgccatgtcaagtgctttgcatctt |
102 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |||||||||| |||| ||||||||||| |
|
|
| T |
137795 |
tcattatcaattttggcccattgaggagaatctgcaggatgtcgaagcattccatcattaaccctttcatttgcatgccatgttaagttctttgcatctt |
137696 |
T |
|
| Q |
103 |
ctgcattacgatacatgcgcctaaatcttggtattatcggaaagtaccatagtactttggctggggctgtttctttcttattatatcgtgatgcaccgca |
202 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||| ||||||||||||| ||||||||||| || | || |
|
|
| T |
137695 |
ccgcattacgatacatgcgcctaaatcttggtattattggaaaataccatagcactttggatggacctgtttctttcttcttatatcgtgaagcgctaca |
137596 |
T |
|
| Q |
203 |
tttaggacacttatctaatgatgcatactcatttcgaaataaaatacaatctttaggacaagcatgtatcttctcataactcatgccaatagaacgtaac |
302 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
137595 |
tttaggacacatatttaatgatgcatactcattttgaaataaaatgcaatcatttggacaagcatgtatcttctcataactcatgccaatagaacataac |
137496 |
T |
|
| Q |
303 |
atctgtttagcctcacaggttc |
324 |
Q |
| |
|
| ||||||||||| |||||| |
|
|
| T |
137495 |
aatcgtttagcctcataggttc |
137474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 143003 - 142698
Alignment:
| Q |
19 |
cccattgaggagaatctgcaggatgtcgaagcattccatctgcaacccttccatattcatgccatgtcaagtgctttgcatcttctgcattacgatacat |
118 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||| ||||||| ||| | |||||||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
143003 |
cccattgaggagaatctgtaggatgtcgaagtattccatcattaaccctttcatttgcatgccatgttaagttctttgcatcttccgcattacgatacat |
142904 |
T |
|
| Q |
119 |
gcgcctaaatcttggtattatcggaaagtaccatagtactttggctggggctgtttctttcttattatatcgtgatgcaccgcatttaggacacttatct |
218 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| ||||| | ||| ||||||||||||| ||||||||||| || | |||||||||||| ||| | |
|
|
| T |
142903 |
gcgcctaaatcttggtattattggaaaataccatagcacttttgatggacctgtttctttcttcttatatcgtgaagcgctacatttaggacacatattt |
142804 |
T |
|
| Q |
219 |
aatgatgcatactcatttcgaaataaaatacaatctttaggacaagcatgtatcttctcataactcatgccaatagaacgtaacatctgtttagcctcac |
318 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
142803 |
aatgatgcatactcctttcgaaataaaatgcaatcatttggacaagcatgtatcttctcataactcatgccaatagaacataacaatcgtttagcctcat |
142704 |
T |
|
| Q |
319 |
aggttc |
324 |
Q |
| |
|
|||||| |
|
|
| T |
142703 |
aggttc |
142698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 324
Target Start/End: Complemental strand, 20748922 - 20748601
Alignment:
| Q |
3 |
tcatgatcaattttttcccattgaggagaatctgcaggatgtcgaagcattccatctgcaacccttccatattcatgccatgtcaagtgctttgcatctt |
102 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |||||||||| |||| ||||||||||| |
|
|
| T |
20748922 |
tcattatcaattttggcccattgaggagaatctgcaggatgtcgaagcattccatcattaaccctttcatttgcatgccatgttaagttctttgcatctt |
20748823 |
T |
|
| Q |
103 |
ctgcattacgatacatgcgcctaaatcttggtattatcggaaagtaccatagtactttggctggggctgtttctttcttattatatcgtgatgcaccgca |
202 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||| ||||||||||||| ||||||||||| || | || |
|
|
| T |
20748822 |
ccgcattacgatacatgcgcctaaatcttggtattattggaaaataccatagcactttggatggacctgtttctttcttcttatatcgtgaagcgctaca |
20748723 |
T |
|
| Q |
203 |
tttaggacacttatctaatgatgcatactcatttcgaaataaaatacaatctttaggacaagcatgtatcttctcataactcatgccaatagaacgtaac |
302 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20748722 |
tttaggacacatatttaatgatgcatactcattttgaaataaaatgcaatcatttggacaagcatgtatcttctcataactcatgccaatagaacataac |
20748623 |
T |
|
| Q |
303 |
atctgtttagcctcacaggttc |
324 |
Q |
| |
|
| ||||||||||| |||||| |
|
|
| T |
20748622 |
aatcgtttagcctcataggttc |
20748601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 6773117 - 6772829
Alignment:
| Q |
1 |
aatcatgatcaattttttcccattgaggagaatctgcaggatgtcgaagcattccatctgcaacccttccatattcatgccatgtcaagtgctttgcatc |
100 |
Q |
| |
|
|||||||||||||||| |||| || || ||||||||||| ||||||| | | |||||| || || |||||| ||||||||||| || |||||||| |
|
|
| T |
6773117 |
aatcatgatcaattttagcccactgtggcgaatctgcagggtgtcgaaacttcccatctctaattctatcatatttgtgccatgtcaaatgttttgcatc |
6773018 |
T |
|
| Q |
101 |
ttctgcattacgatacatgcgcctaaatcttggtattatcggaaagtaccatagtactttggctggggctgtttctttcttattatatcgtgatgcaccg |
200 |
Q |
| |
|
|| || ||| | |||||||||| ||||| |||||||| |||| ||||||| ||||| ||||| || |||||||| |||| || || |
|
|
| T |
6773017 |
aacttcactactaaacatgcgcctgaatctcggtattataggaagataccatacgactttagctggaataaattgtttcttat---atcgagagacatta |
6772921 |
T |
|
| Q |
201 |
catttaggacacttatctaatgatgcatactcatttcgaaataaaatacaatctttaggacaagcatgtatcttctcataactcatgccaat |
292 |
Q |
| |
|
||||||||||||| || |||||||||||| ||||||||||| ||||| ||||| ||||||||||| || ||| | ||||||||||||||||| |
|
|
| T |
6772920 |
catttaggacactcatttaatgatgcatattcatttcgaaacaaaatgcaatcgttaggacaagcgtgaatcctttcataactcatgccaat |
6772829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 201 - 292
Target Start/End: Original strand, 34211460 - 34211551
Alignment:
| Q |
201 |
catttaggacacttatctaatgatgcatactcatttcgaaataaaatacaatctttaggacaagcatgtatcttctcataactcatgccaat |
292 |
Q |
| |
|
||||||||||||| || ||| ||||| || ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
34211460 |
catttaggacactcatttaacgatgcgtattcatttcgaaacaaaatgcaatcgttaggacaagcgtgtatcttttcataactcatgccaat |
34211551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 25040381 - 25040428
Alignment:
| Q |
277 |
cataactcatgccaatagaacgtaacatctgtttagcctcacaggttc |
324 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
25040381 |
cataactcatgccaatagaacgtaacatttgtttagcctcataggttc |
25040428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 201 - 292
Target Start/End: Original strand, 130119 - 130210
Alignment:
| Q |
201 |
catttaggacacttatctaatgatgcatactcatttcgaaataaaatacaatctttaggacaagcatgtatcttctcataactcatgccaat |
292 |
Q |
| |
|
||||||||||||| || ||| ||||| || ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
130119 |
catttaggacactcatttaacgatgcgtattcatttcgaaacaaaatgcaatcgttaggacaagcgtgtatcttttcataactcatgccaat |
130210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University