View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12781_high_16 (Length: 333)

Name: NF12781_high_16
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12781_high_16
NF12781_high_16
[»] chr3 (13 HSPs)
chr3 (12-326)||(9765832-9766146)
chr3 (187-314)||(22157796-22157926)
chr3 (175-314)||(6077833-6077976)
chr3 (45-102)||(13899501-13899558)
chr3 (111-161)||(22157689-22157739)
chr3 (60-106)||(50334705-50334751)
chr3 (48-110)||(51471221-51471283)
chr3 (41-82)||(16607666-16607707)
chr3 (61-110)||(16876437-16876486)
chr3 (41-106)||(39340804-39340869)
chr3 (62-106)||(17268885-17268929)
chr3 (60-110)||(28769572-28769622)
chr3 (41-106)||(34359364-34359429)
[»] chr5 (8 HSPs)
chr5 (12-326)||(21114573-21114887)
chr5 (181-256)||(27030049-27030126)
chr5 (12-106)||(19343556-19343650)
chr5 (116-177)||(27030157-27030217)
chr5 (41-102)||(38607329-38607390)
chr5 (60-110)||(39058523-39058573)
chr5 (41-110)||(16089718-16089787)
chr5 (60-104)||(22861027-22861071)
[»] chr8 (17 HSPs)
chr8 (12-326)||(43651364-43651678)
chr8 (12-106)||(12596858-12596952)
chr8 (181-256)||(22647929-22648006)
chr8 (38-110)||(33038245-33038317)
chr8 (12-110)||(8026021-8026119)
chr8 (25-95)||(33695139-33695209)
chr8 (60-110)||(39344635-39344685)
chr8 (129-177)||(22647851-22647898)
chr8 (16-110)||(26938670-26938764)
chr8 (60-106)||(30743944-30743990)
chr8 (64-110)||(32796989-32797035)
chr8 (41-106)||(16483777-16483841)
chr8 (41-106)||(24916108-24916172)
chr8 (47-88)||(26736030-26736071)
chr8 (60-101)||(42024060-42024101)
chr8 (12-53)||(42499723-42499764)
chr8 (44-108)||(7632894-7632958)
[»] chr2 (14 HSPs)
chr2 (179-313)||(24863552-24863685)
chr2 (41-110)||(24490618-24490687)
chr2 (12-110)||(6191094-6191192)
chr2 (61-110)||(35954277-35954326)
chr2 (14-110)||(29242627-29242723)
chr2 (17-105)||(30632608-30632696)
chr2 (60-106)||(39293180-39293226)
chr2 (41-110)||(855598-855667)
chr2 (17-105)||(30669077-30669165)
chr2 (17-83)||(30660409-30660475)
chr2 (12-110)||(31994789-31994887)
chr2 (12-110)||(34904015-34904113)
chr2 (41-82)||(21594705-21594746)
chr2 (12-76)||(17448888-17448952)
[»] chr4 (10 HSPs)
chr4 (111-271)||(51862130-51862291)
chr4 (111-326)||(39482294-39482511)
chr4 (45-110)||(40390927-40390991)
chr4 (29-110)||(47472207-47472287)
chr4 (41-82)||(14806127-14806168)
chr4 (43-104)||(15025813-15025874)
chr4 (45-106)||(22593354-22593415)
chr4 (48-110)||(26081225-26081287)
chr4 (108-177)||(51861082-51861150)
chr4 (61-105)||(7985823-7985867)
[»] scaffold0039 (2 HSPs)
scaffold0039 (199-311)||(81474-81584)
scaffold0039 (108-166)||(81640-81698)
[»] chr6 (13 HSPs)
chr6 (108-177)||(13550172-13550240)
chr6 (199-261)||(19380815-19380875)
chr6 (12-110)||(3807073-3807171)
chr6 (48-110)||(10311678-10311740)
chr6 (12-110)||(10516635-10516733)
chr6 (108-166)||(19380931-19380989)
chr6 (12-110)||(17957034-17957132)
chr6 (60-110)||(25042900-25042950)
chr6 (41-110)||(3336052-3336121)
chr6 (41-82)||(14896834-14896875)
chr6 (29-110)||(15691443-15691524)
chr6 (45-106)||(24672307-24672368)
chr6 (41-82)||(14198632-14198673)
[»] chr7 (15 HSPs)
chr7 (12-115)||(34471227-34471330)
chr7 (111-177)||(9332749-9332814)
chr7 (179-271)||(9332847-9332942)
chr7 (12-106)||(25067656-25067750)
chr7 (61-110)||(13009431-13009480)
chr7 (41-106)||(39596814-39596883)
chr7 (12-110)||(20132058-20132156)
chr7 (60-110)||(27567732-27567782)
chr7 (41-106)||(11297791-11297856)
chr7 (41-82)||(12925246-12925287)
chr7 (258-314)||(27273015-27273072)
chr7 (29-106)||(38487341-38487418)
chr7 (45-110)||(40751697-40751762)
chr7 (60-96)||(2316119-2316155)
chr7 (108-176)||(9333879-9333946)
[»] scaffold0755 (2 HSPs)
scaffold0755 (181-256)||(5432-5509)
scaffold0755 (129-166)||(5547-5584)
[»] scaffold0020 (1 HSPs)
scaffold0020 (12-110)||(152236-152334)
[»] chr1 (4 HSPs)
chr1 (41-110)||(20985961-20986030)
chr1 (60-110)||(33753026-33753076)
chr1 (45-106)||(13392847-13392908)
chr1 (41-102)||(16545483-16545544)
[»] scaffold0005 (2 HSPs)
scaffold0005 (12-107)||(253814-253909)
scaffold0005 (41-82)||(33559-33600)
[»] scaffold0002 (1 HSPs)
scaffold0002 (41-82)||(363166-363207)
[»] scaffold0536 (1 HSPs)
scaffold0536 (27-98)||(3875-3946)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 9766146 - 9765832
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaatt 111  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9766146 atgtttttagtatctataaaattagaaacttttaagtttattttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaatt 9766047  T
Q  112 gaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgtcaaatggatgaaatgtatctctctttgttctgaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9766046 gaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgtcaaatggatgaaatgtatctctctttgttctgaa 9765947  T
Q  212 atcattggatcataaaagagataagaaatatagatcttcggtgaaacctgtcatgtttcctctctatctttggatgaaatgtctcttgcaattgtaattt 311  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9765946 atcattggatcatagaagagataagaaatatagatcttcggtgaaacctgtcatgtttcctctctatctttggatgaaatgtctcttgcaattgtaattt 9765847  T
Q  312 ggacgtctctgctcc 326  Q
    ||||||| |||||||    
T  9765846 ggacgtccctgctcc 9765832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 314
Target Start/End: Original strand, 22157796 - 22157926
Alignment:
Q  187 gaaatgtatct--ctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaa-cctgtcatgttt-cctctctatcttt 282  Q
    |||||||||||  |||||||||||||||||| ||||| ||||||||||||| |||||| ||| || ||||||| |||||||||||| ||| ||||  | |    
T  22157796 gaaatgtatctttctctttgttctgaaatcaatggatgataaaagagataataaatattgatatttggtgaaatcctgtcatgtttccctatctaaatat 22157895  T
Q  283 ggatgaaatgtctcttgcaattgtaatttgga 314  Q
     ||||||||||||||| |||||||||| ||||    
T  22157896 agatgaaatgtctctt-caattgtaatctgga 22157926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 314
Target Start/End: Complemental strand, 6077976 - 6077833
Alignment:
Q  175 tgtcaaatggatgaaatgtatctctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaacc-tgtcatg-tttcct 272  Q
    ||||||||||||||||||||| | ||| | |  | |||| | ||||| ||||||| || ||||||||||||   | ||||||||| ||||||| ||||||    
T  6077976 tgtcaaatggatgaaatgtatatttctctttgttaaaataaatggatgataaaagggaaaagaaatatagaaacttggtgaaaccctgtcatgctttcct 6077877  T
Q  273 ctctatctttggatgaaa--tgtctcttgcaattgtaatttgga 314  Q
    || |||||||||||||||  | ||||||||||||||||||||||    
T  6077876 ctttatctttggatgaaacgtctctcttgcaattgtaatttgga 6077833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 13899501 - 13899558
Alignment:
Q  45 aagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 102  Q
    |||||||||| ||| |||||||||||| |||||||||||||| | |||||||||||||    
T  13899501 aagtttagttcctataaaattttaatggtaattttagtcctccataatattgtagttt 13899558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 22157689 - 22157739
Alignment:
Q  111 tgaccaataaaatcacaaactaaattatccattcatactaaaattgaaatt 161  Q
    ||||||||||||| || |||||||| ||||||||||||| |||||||||||    
T  22157689 tgaccaataaaatgaccaactaaatcatccattcatactgaaattgaaatt 22157739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 50334751 - 50334705
Alignment:
Q  60 aaaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    |||||||||||||||||||||||| || | |||||||||||||||||    
T  50334751 aaaattttaatgataattttagtcttccaaaatattgtagtttgtaa 50334705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 51471221 - 51471283
Alignment:
Q  48 tttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    ||||||||||| ||||||||| ||||||||||| ||||| ||||||||  ||||| |||||||    
T  51471221 tttagtttctataaaattttattgataattttactcctccacaatattaaagtttataagaat 51471283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 16607707 - 16607666
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagt 82  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  16607707 ttttaagtttagttcctataaaattttaatgataattttagt 16607666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 16876437 - 16876486
Alignment:
Q  61 aaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    ||||||||||  |||||||||||||| | |||||||||||||||||||||    
T  16876437 aaattttaattgtaattttagtcctccataatattgtagtttgtaagaat 16876486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 39340804 - 39340869
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    |||||||||||||  ||| ||| |||||||| ||||||||||| || | |||||||||||||||||    
T  39340804 ttttaagtttagtccctataaagttttaatggtaattttagtcatccaaaatattgtagtttgtaa 39340869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 17268885 - 17268929
Alignment:
Q  62 aattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    |||||||||||||||||||||| |||| | |||||||||||||||    
T  17268885 aattttaatgataattttagtcttctatattattgtagtttgtaa 17268929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 28769622 - 28769572
Alignment:
Q  60 aaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||||| | ||||| |||||| | |||||||||||||||||||||    
T  28769622 aaaattttaatggtgatttttgtcctccataatattgtagtttgtaagaat 28769572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 34359364 - 34359429
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    |||||||||||||   || |||||||||||| |||||||| ||||| | |||||| ||||||||||    
T  34359364 ttttaagtttagtccatataaaattttaatggtaattttattcctccaaaatattatagtttgtaa 34359429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 21114573 - 21114887
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaatt 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||    
T  21114573 atgtttttagtatctataaaatcagaaacttttaagtttagtttctagaaaattttaatgataattttagtccaccataatattgtagtttgtaagaatt 21114672  T
Q  112 gaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgtcaaatggatgaaatgtatctctctttgttctgaa 211  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21114673 gaccaataaaatcacaaactaaattattcattcatactaaaattgaaattaaaaaataagaagtgtcaaatagatgaaatgtatctctctttgttctgaa 21114772  T
Q  212 atcattggatcataaaagagataagaaatatagatcttcggtgaaacctgtcatgtttcctctctatctttggatgaaatgtctcttgcaattgtaattt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21114773 atcattggatcataaaagagataagaaatatagatcttcggtgaaacctgtcatgtttcctctctatctttggatgaaatgtctcttgcaattgtaattt 21114872  T
Q  312 ggacgtctctgctcc 326  Q
    ||||||| |||||||    
T  21114873 ggacgtccctgctcc 21114887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 27030126 - 27030049
Alignment:
Q  181 atggatgaaatgtatct--ctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaa 256  Q
    |||||||||||||||||  |||| ||||||||||||| ||||| |||||||||||||||||||||||| || ||||||    
T  27030126 atggatgaaatgtatctttctctatgttctgaaatcaatggatgataaaagagataagaaatatagatgtttggtgaa 27030049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 19343556 - 19343650
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    |||||||||||| ||| ||||| |  |  ||||||||||||| |||| ||||||||| ||||||||||||||||  | |||||||||||||||||    
T  19343556 atgtttttagtacctacaaaatcatgagtttttaagtttagtctctataaaattttagtgataattttagtcctaaaaaatattgtagtttgtaa 19343650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 27030217 - 27030157
Alignment:
Q  116 aataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgt 177  Q
    ||||||||| || ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  27030217 aataaaatcgcagactaaataatccattcatactaaaattgaaatta-aaaataagaagtgt 27030157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 38607329 - 38607390
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 102  Q
    |||||||||||||||||| |||||||||||  |||||||||||||  | |||||||||||||    
T  38607329 ttttaagtttagtttctataaaattttaattgtaattttagtccttcataatattgtagttt 38607390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 39058573 - 39058523
Alignment:
Q  60 aaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||||| |||||||||||||| | || ||||||||||||||||||    
T  39058573 aaaattttaatggtaattttagtcctccataacattgtagtttgtaagaat 39058523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 16089718 - 16089787
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||||||  | | |||||||||||  |||||||||||||  | |||||| ||||||||||||||    
T  16089718 ttttaagtttagtcccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgtaagaat 16089787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 22861071 - 22861027
Alignment:
Q  60 aaaattttaatgataattttagtcctctacaatattgtagtttgt 104  Q
    |||||||||||  |||||||||||||||| | |||||||||||||    
T  22861071 aaaattttaattgtaattttagtcctctatagtattgtagtttgt 22861027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 43651364 - 43651678
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaatt 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  43651364 atgtttttagtatctataaaatcagaaacttttaagtttagtttctagaaaattttaatgataattttagtccaccacaatattgtagtttgtaagaatt 43651463  T
Q  112 gaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgtcaaatggatgaaatgtatctctctttgttctgaa 211  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||    
T  43651464 gaccaataaaatcacaaactaaattattcattcatactaaaattgaaattaaaaaataagaagtgtcaaatagatgaaatatatctctctttgttatgaa 43651563  T
Q  212 atcattggatcataaaagagataagaaatatagatcttcggtgaaacctgtcatgtttcctctctatctttggatgaaatgtctcttgcaattgtaattt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43651564 atcattggatcataaaagagataagaaatatagatcttcggtgaaacctgtcatgtttcctctctatctttggatgaaatgtctcttgcaattgtaattt 43651663  T
Q  312 ggacgtctctgctcc 326  Q
    ||||||| |||||||    
T  43651664 ggacgtccctgctcc 43651678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 12596858 - 12596952
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    ||||||||||| |||| ||||| | ||  |||||||||||||  ||| |||||||||||| |||||||||||||| | |||||||||||||||||    
T  12596858 atgtttttagtctctacaaaatcataagtttttaagtttagtccctataaaattttaatggtaattttagtcctccaaaatattgtagtttgtaa 12596952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 22647929 - 22648006
Alignment:
Q  181 atggatgaaatgtatctct--ctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaa 256  Q
    ||||||||||||||||| |  || ||||||||||||| ||||| |||||||||||||||||||||||| || ||||||    
T  22647929 atggatgaaatgtatctttatctatgttctgaaatcaatggatgataaaagagataagaaatatagatgtttggtgaa 22648006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 33038245 - 33038317
Alignment:
Q  38 aacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    ||||||||||||||||| |||  |||||||||||| ||||||| ||||| | ||||||| |||||||||||||    
T  33038245 aacttttaagtttagttcctattaaattttaatgaaaattttaatcctccataatattgcagtttgtaagaat 33038317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 8026021 - 8026119
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||| ||||  ||||||||||| ||| ||| ||||||| | |||| |||||||||||| | ||| |||||||| | ||| | |||||||||||||||    
T  8026021 atgtttatagtccctataaaattacaaattttaaagtttaatctctataaaattttaatggtgattgtagtcctccataatttagtagtttgtaagaat 8026119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 33695139 - 33695209
Alignment:
Q  25 ctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatatt 95  Q
    |||||||||||  |  ||| ||||||||| | || |||| |||||||||||||||||||||||||||||||    
T  33695139 ctataaaattatgagttttcaagtttagtctttataaaactttaatgataattttagtcctctacaatatt 33695209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 39344635 - 39344685
Alignment:
Q  60 aaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||||| ||| |||||||||| | |||||||||||||||||||||    
T  39344635 aaaattttaatggtaactttagtcctccataatattgtagtttgtaagaat 39344685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 22647851 - 22647898
Alignment:
Q  129 actaaattatccattcatactaaaattgaaattaaaaaataagaagtgt 177  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  22647851 actaaataatccattcatactgaaattgaaatt-aaaaataagaagtgt 22647898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 26938764 - 26938670
Alignment:
Q  16 ttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||  ||||||||| | ||  ||| |||||||||  ||| |||||||||||| ||||||| |||||| | ||| | |||||||||||||||    
T  26938764 ttttagtccctataaaatcataagttttcaagtttagtccctataaaattttaatggtaatttttgtcctccataatttagtagtttgtaagaat 26938670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 30743944 - 30743990
Alignment:
Q  60 aaaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    |||| ||||||| |||||||||||||| | |||||||||||||||||    
T  30743944 aaaactttaatgttaattttagtcctcaataatattgtagtttgtaa 30743990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 32796989 - 32797035
Alignment:
Q  64 ttttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||  |||||||||||||||| | |||||||||||||||||||    
T  32796989 ttttaatagtaattttagtcctctaaagtattgtagtttgtaagaat 32797035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 16483777 - 16483841
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    |||||||||||||  ||  |||||||||||| ||||||||||| || | |||||||||||||||||    
T  16483777 ttttaagtttagtccctgtaaaattttaatggtaattttagtcttc-aaaatattgtagtttgtaa 16483841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 24916172 - 24916108
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    |||||||||||||  ||| |||||||||||| ||||||| |||||| | |||| ||||||||||||    
T  24916172 ttttaagtttagtccctataaaattttaatggtaattttcgtcctccaaaata-tgtagtttgtaa 24916108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 26736071 - 26736030
Alignment:
Q  47 gtttagtttctagaaaattttaatgataattttagtcctcta 88  Q
    |||||||||||| ||| ||||||||||||||||||| |||||    
T  26736071 gtttagtttctataaacttttaatgataattttagttctcta 26736030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 42024101 - 42024060
Alignment:
Q  60 aaaattttaatgataattttagtcctctacaatattgtagtt 101  Q
    |||||||||||| |||||||||||||| | ||||||||||||    
T  42024101 aaaattttaatgctaattttagtcctccaaaatattgtagtt 42024060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 42499764 - 42499723
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagt 53  Q
    |||||||| ||||||||||||||| |||||||||| ||||||    
T  42499764 atgttttttgtatctataaaattataaacttttaaatttagt 42499723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 7632894 - 7632958
Alignment:
Q  44 taagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaaga 108  Q
    |||||||||| | || ||| ||||| ||||||||||||||||| |  ||||| ||||||||||||    
T  7632894 taagtttagtctttataaacttttattgataattttagtcctcaatgatattttagtttgtaaga 7632958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 179 - 313
Target Start/End: Original strand, 24863552 - 24863685
Alignment:
Q  179 aaatggatgaaatgtatctctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaacctgtcatgtttcctctctat 278  Q
    ||||||||||||||||| | ||| | |||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24863552 aaatggatgaaatgtatttttctct-ttctaaaatcaatggatcataaaagagataagaaatatagatctttggtgaaacctgtcatgtttcctctctat 24863650  T
Q  279 ctttggatgaaatgtctcttgcaattgtaatttgg 313  Q
    |||||||| ||||||||||||||||||| ||||||    
T  24863651 ctttggattaaatgtctcttgcaattgttatttgg 24863685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 24490687 - 24490618
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    ||||||||||||| |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  24490687 ttttaagtttagtctctataaaattttaatagtaattttagtcctctacaatattgtagtttgtaagaat 24490618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 6191094 - 6191192
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||||||||||||||| |  |   || |||||||||  ||| |||||||||||| |||||||||||||| | ||||||||| |||||||||||    
T  6191094 atgtttttagtatctataaaatcattagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatattgtactttgtaagaat 6191192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 35954277 - 35954326
Alignment:
Q  61 aaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||||    
T  35954277 aaattttaatggtaattttagtcctcaataatattgtagtttgtaagaat 35954326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 29242723 - 29242627
Alignment:
Q  14 gtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||  ||| |||||||| |  ||| |||||||||  ||| |||||||||||| |||||||||||||| |  ||||| ||||||||||||||    
T  29242723 gtttttagtccctacaaaattaggagttttcaagtttagtccctataaaattttaatggtaattttagtcctcgaagatattatagtttgtaagaat 29242627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 30632696 - 30632608
Alignment:
Q  17 tttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgta 105  Q
    ||||||||||| ||| | ||||  |||||| |||||| |||| |||||||||||| ||||||||||| |  | ||||||||||||||||    
T  30632696 tttagtatctaaaaattcagaagtttttaattttagtctctataaaattttaatggtaattttagtcttggataatattgtagtttgta 30632608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 39293226 - 39293180
Alignment:
Q  60 aaaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    |||||||||||| |||||||||||||||| ||||||||| |||||||    
T  39293226 aaaattttaatggtaattttagtcctctaaaatattgtaatttgtaa 39293180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 855598 - 855667
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||||||  ||| |||||||||||| ||||||||||||||    ||||||||||||||| ||||    
T  855598 ttttaagtttagtccctataaaattttaatggtaattttagtcctcggtgatattgtagtttgtaggaat 855667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 30669165 - 30669077
Alignment:
Q  17 tttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgta 105  Q
    ||||||||||| ||| | ||||  |||||| |||||| |||| |||||||||||| ||||||||||| |  | |||||| |||||||||    
T  30669165 tttagtatctaaaaattcagaagtttttaattttagtctctataaaattttaatggtaattttagtcttgaataatattatagtttgta 30669077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 30660475 - 30660409
Alignment:
Q  17 tttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtc 83  Q
    ||||||||||| ||| | ||||  |||||| |||||| |||| |||| |||||||||||||||||||    
T  30660475 tttagtatctaaaaattcagaagtttttaattttagtctctataaaactttaatgataattttagtc 30660409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 31994887 - 31994789
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||||  ||| ||||| | ||| ||||||||||| |  ||  |||||||||||  |||||||||| ||| | ||||||||| |||||||||||    
T  31994887 atgtttttagtccctacaaaatcacaaatttttaagtttaatccctttaaaattttaatagtaattttagttctccataatattgtaatttgtaagaat 31994789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 34904015 - 34904113
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||||  ||| ||||| | ||  |||||||||||||  ||  |||||| |||| ||||||||||| ||  | |||||||||||||||||||||    
T  34904015 atgtttttagtccctacaaaatcacaagtttttaagtttagtccctgtaaaattgtaataataattttagttcttcataatattgtagtttgtaagaat 34904113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 21594705 - 21594746
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagt 82  Q
    |||||||||| ||| ||| |||||||||||||||||||||||    
T  21594705 ttttaagtttcgttcctataaaattttaatgataattttagt 21594746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 17448952 - 17448888
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataat 76  Q
    ||||||||| |  |||||||||||  |  ||||||||||||||| || |||||||||||||||||    
T  17448952 atgtttttaatccctataaaattatgagtttttaagtttagtttttataaaattttaatgataat 17448888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 111 - 271
Target Start/End: Complemental strand, 51862291 - 51862130
Alignment:
Q  111 tgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgtcaaatggatgaaatgtatct--ctctttgttct 208  Q
    |||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |||||| ||| | ||| | | | |||||||  |||||||||||    
T  51862291 tgaccaataaaatcaccaactaaatcatccattcatactgaaattgaaattaaaaa-taagaaatgtaagatgaaagta-tgtatctttctctttgttct 51862194  T
Q  209 gaaatcattggatcataaaagagataagaaatatagatcttcggtgaaa-cctgtcatgtttcc 271  Q
    ||||||| ||||| ||||||||||||| |||||| ||| || ||||||| ||||||||||||||    
T  51862193 gaaatcaatggatgataaaagagataataaatattgatatttggtgaaaccctgtcatgtttcc 51862130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 111 - 326
Target Start/End: Original strand, 39482294 - 39482511
Alignment:
Q  111 tgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgtcaaatggatgaaatgtatct--ctctttgttct 208  Q
    ||||||||||||| || |||||||| ||||||||||||| |||||||| ||||||| |||||||||| | ||| | | | |||||||  |||||||||||    
T  39482294 tgaccaataaaatgaccaactaaatcatccattcatactgaaattgaatttaaaaa-taagaagtgtaagatgaaagta-tgtatctttctctttgttct 39482391  T
Q  209 gaaatcattggatcataaaagagataagaaatatagatcttcggtgaaa-cctgtcatgttt-cctctctatctttggatgaaatgtctcttgcaattgt 306  Q
    |||| || ||||| ||||||||||||| |||||| ||| || ||| ||| |||||||||||| ||| ||||  | | ||||||||||||||| |||||||    
T  39482392 gaaaccaatggatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctctt-caattgt 39482490  T
Q  307 aatttgg-acgtctctgctcc 326  Q
    ||||||| ||||| |||||||    
T  39482491 aatttggaacgtccctgctcc 39482511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 40390927 - 40390991
Alignment:
Q  45 aagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||| ||| ||||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  40390927 aagtttagttcctataaaattttaatgataattttagtcctcca-tatattgtagtttgtaagaat 40390991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 47472207 - 47472287
Alignment:
Q  29 aaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    ||||||| ||| |||||||||||||| ||| |||||||||||| |||||||||||||  | ||||||||| ||| |||||||    
T  47472207 aaaattacaaatttttaagtttagtt-ctataaaattttaatggtaattttagtccttcataatattgtaatttataagaat 47472287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 14806127 - 14806168
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagt 82  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  14806127 ttttaagtttagttcctataaaattttaatgataattttagt 14806168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 15025813 - 15025874
Alignment:
Q  43 ttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgt 104  Q
    ||||||||||||  || |||||||||||| |||||||| ||||||| |||||| ||||||||    
T  15025813 ttaagtttagttcttataaaattttaatggtaattttaatcctctaaaatattatagtttgt 15025874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 22593415 - 22593354
Alignment:
Q  45 aagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    ||||||||||||||  ||||||||||| | ||||||||| ||||||||||  ||||||||||    
T  22593415 aagtttagtttctattaaattttaatggtgattttagtcttctacaatatcatagtttgtaa 22593354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 26081287 - 26081225
Alignment:
Q  48 tttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    ||||||||| | ||||||||| ||||||||||| ||||| ||||||||  ||||| |||||||    
T  26081287 tttagtttcgataaaattttattgataattttactcctccacaatattaaagtttataagaat 26081225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 51861150 - 51861082
Alignment:
Q  108 aattgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgt 177  Q
    |||||| |||||||||||| |||||||||||||  ||| ||| | ||||||| |||||||||| ||||||    
T  51861150 aattgatcaataaaatcaccaactaaattatcctctcaaactgagattgaaa-taaaaaataaaaagtgt 51861082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 7985823 - 7985867
Alignment:
Q  61 aaattttaatgataattttagtcctctacaatattgtagtttgta 105  Q
    |||||||||||||||||| ||||||| | |||||| |||||||||    
T  7985823 aaattttaatgataatttcagtcctcaataatattatagtttgta 7985867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 81584 - 81474
Alignment:
Q  199 tctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaacctgtcatg-tttcctctctatctttggatgaaatgtctct 297  Q
    ||||| ||||||||||| ||||||||||||||||||||||  ||||||||| ||||||||||| |||| | ||||||||||||||   ||||||||||||    
T  81584 tctttattctgaaatcagtggatcataaaagagataagaa--atagatctttggtgaaacctgacatgctatcctctctatctttatgtgaaatgtctct 81487  T
Q  298 tgcaattgtaattt 311  Q
    | ||||||||||||    
T  81486 t-caattgtaattt 81474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 81698 - 81640
Alignment:
Q  108 aattgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaa 166  Q
    |||||||||||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  81698 aattgaccaataaaattaccaattaaattattcattcatactaaaattgaaatcaaaaa 81640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 13550172 - 13550240
Alignment:
Q  108 aattgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgt 177  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  13550172 aattgaccaataaaatcaccaactaaattatccattcatactgaaattgaaa-taaaaaataagaagtgt 13550240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 19380875 - 19380815
Alignment:
Q  199 tctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaacctg 261  Q
    ||||| ||||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||    
T  19380875 tctttattctgaaatcagtggatcataaaagagataagaa--atagatctttggtgaaacctg 19380815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 3807073 - 3807171
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||||  ||||||||| | ||  ||||| ||||||| |||| |||||||||||| ||||||| |||||| | ||| | |||||||||||||||    
T  3807073 atgtttttagtccctataaaatcataagtttttatgtttagtctctataaaattttaatggtaattttcgtcctccataatttagtagtttgtaagaat 3807171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 10311678 - 10311740
Alignment:
Q  48 tttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    ||||||| ||| |||||||||||| ||||||||||| || ||||||||||| |||||||||||    
T  10311678 tttagttcctataaaattttaatggtaattttagtcatcaacaatattgtaatttgtaagaat 10311740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 10516733 - 10516635
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||||  ||| ||||| | ||  |||||| ||||||  ||| |||||| ||||||||||||||| |||| | |||||||||||||||||||||    
T  10516733 atgtttttagtccctacaaaatcataagtttttaaatttagtccctataaaattgtaatgataattttagccctccataatattgtagtttgtaagaat 10516635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 19380989 - 19380931
Alignment:
Q  108 aattgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaa 166  Q
    |||||||||||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  19380989 aattgaccaataaaattaccaattaaattattcattcatactaaaattgaaatcaaaaa 19380931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 17957034 - 17957132
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||||  ||||| |||||  |  |||||||||||||| | | |||||||||||  |||||||||||||  | |||||| ||||||||||||||    
T  17957034 atgtttttagtccctatataattatgagtttttaagtttagttccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgtaagaat 17957132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 25042950 - 25042900
Alignment:
Q  60 aaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||||| |||||||||||||||   ||||||||||||||||||||    
T  25042950 aaaattttaatggtaattttagtcctctgtgatattgtagtttgtaagaat 25042900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 3336121 - 3336052
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    ||||||||||||   ||| ||||||||| || |||||||||||||||| ||||||||| |||||| ||||    
T  3336121 ttttaagtttagaccctataaaattttagtggtaattttagtcctctaaaatattgtaatttgtatgaat 3336052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 14896834 - 14896875
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagt 82  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  14896834 ttttaagtttagttcctataaaattttaatgataattttagt 14896875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 15691443 - 15691524
Alignment:
Q  29 aaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||  |||||||||||||| ||  ||  ||||||||||| ||||||| || ||| |||||||||||||||||| ||||    
T  15691443 aaaattatgaacttttaagtttaattcttattaaattttaatggtaattttggtgctccacaatattgtagtttgtatgaat 15691524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 24672307 - 24672368
Alignment:
Q  45 aagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    |||||||||  ||| |||||||||||| |||||||||||||| | ||||||||| |||||||    
T  24672307 aagtttagtccctataaaattttaatggtaattttagtcctccataatattgtaatttgtaa 24672368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 14198673 - 14198632
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagt 82  Q
    |||||||||||||| ||| |||||||||||||| ||||||||    
T  14198673 ttttaagtttagttcctataaaattttaatgatgattttagt 14198632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 34471227 - 34471330
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaatt 111  Q
    |||||||||||  ||| ||||| | || ||||||||||||||  ||| |||||||||||| |||||||||||||| | ||||||||||||||||| |||     
T  34471227 atgtttttagtccctacaaaatcacaagcttttaagtttagtccctataaaattttaatggtaattttagtcctccaaaatattgtagtttgtaataata 34471326  T
Q  112 gacc 115  Q
    ||||    
T  34471327 gacc 34471330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 9332749 - 9332814
Alignment:
Q  111 tgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgt 177  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  9332749 tgaccaataaaatcaccaactaaatcatccattcatactgaaattgaaatt-aaaaataagaagtgt 9332814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 9332847 - 9332942
Alignment:
Q  179 aaatggatgaaatgtatct--ctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaa-cctgtcatgtttcc 271  Q
    ||||||| ||||||||| |  |||||||||||||||||| ||||| ||||||||||||| |||||| ||| || ||||||| ||||||||||||||    
T  9332847 aaatggaagaaatgtatttttctctttgttctgaaatcaatggatgataaaagagataataaatattgatatttggtgaaaccctgtcatgtttcc 9332942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 25067656 - 25067750
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    ||||||||| | |||| ||||| | ||| |||||||||| ||||||| |||||||||||| |||||||| ||||| | |||||| ||||||||||    
T  25067656 atgtttttaatctctacaaaatcataaatttttaagtttggtttctataaaattttaatggtaattttaatcctccataatattatagtttgtaa 25067750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 13009480 - 13009431
Alignment:
Q  61 aaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  13009480 aaattttaatggtaattttagtcctctataatattgtagtttgtaagaat 13009431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 39596883 - 39596814
Alignment:
Q  41 ttttaagtttagtttctaga----aaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    |||||||||||||||||| |    || ||||||||||||||||||||||| | |||||||||||||||||    
T  39596883 ttttaagtttagtttctatatataaatttttaatgataattttagtcctccaaaatattgtagtttgtaa 39596814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 20132058 - 20132156
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||||  ||||| |||||  |  |||||||||||||||| | |||||||||||  |||||||||||||  | |||||| || |||||||||||    
T  20132058 atgtttttagtccctatataattatgagtttttaagtttagtttcaataaaattttaattgtaattttagtcctaaaaaatattataatttgtaagaat 20132156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 27567782 - 27567732
Alignment:
Q  60 aaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||||| |||||||||||||  | |||||||||||||||||||||    
T  27567782 aaaattttaatggtaattttagtcctacataatattgtagtttgtaagaat 27567732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 11297791 - 11297856
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    ||||||| |||||| |||  ||||||||||| |||||||||||||| | |||||| ||||||||||    
T  11297791 ttttaagcttagttcctatgaaattttaatggtaattttagtcctccaaaatattttagtttgtaa 11297856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 12925246 - 12925287
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagt 82  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  12925246 ttttaagtttagttcctataaaattttaatgataattttagt 12925287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 27273015 - 27273072
Alignment:
Q  258 cctgtcatgtttcc-tctctatctttggatgaaatgtctcttgcaattgtaatttgga 314  Q
    |||||||||||| | ||| ||||| ||||||||| |||||||||||||||||||||||    
T  27273015 cctgtcatgttttcgtctttatctgtggatgaaacgtctcttgcaattgtaatttgga 27273072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 38487341 - 38487418
Alignment:
Q  29 aaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    ||||||| ||| ||||||||||||| | || |||||||||||| |||||||| || | || |||||| ||||||||||    
T  38487341 aaaattacaaatttttaagtttagtctttataaaattttaatggtaattttaatcatttataatattatagtttgtaa 38487418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 40751762 - 40751697
Alignment:
Q  45 aagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||| ||| |||||||||||| ||||| | |||||  | |||||| ||||||||||||||    
T  40751762 aagtttagttcctataaaattttaatgctaattattgtccttcataatattttagtttgtaagaat 40751697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 2316119 - 2316155
Alignment:
Q  60 aaaattttaatgataattttagtcctctacaatattg 96  Q
    ||||||||||||||||||||||||||| | |||||||    
T  2316119 aaaattttaatgataattttagtcctccataatattg 2316155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 9333879 - 9333946
Alignment:
Q  108 aattgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtg 176  Q
    |||||| |||||||||||| |||||||||||||  ||| ||| | ||||||| |||||||||| |||||    
T  9333879 aattgatcaataaaatcaccaactaaattatcctctcaaactgagattgaaa-taaaaaataaaaagtg 9333946  T

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Target: scaffold0755 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 5509 - 5432
Alignment:
Q  181 atggatgaaatgtatct--ctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaa 256  Q
    |||||||||||||||||  |||| ||||||||||||| ||||| |||||||||||||||||||||||| || ||||||    
T  5509 atggatgaaatgtatctttctctatgttctgaaatcaatggatgataaaagagataagaaatatagatgtttggtgaa 5432  T

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Target: scaffold0755; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 5584 - 5547
Alignment:
Q  129 actaaattatccattcatactaaaattgaaattaaaaa 166  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  5584 actaaataatccattcatactgaaattgaaattaaaaa 5547  T

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Target: scaffold0020 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 152334 - 152236
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||| ||||  |||||||||||  || ||| ||||||||| | || |||||||||||| |||||||||||||  | |||||||||| ||||||||||    
T  152334 atgtttgtagtccctataaaattatgaattttcaagtttagtctttataaaattttaatggtaattttagtccttcataatattgtagattgtaagaat 152236  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 20985961 - 20986030
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||| ||||||  ||| |||||||||||| ||||||||||| |||| |||||||||||||| ||||||    
T  20985961 ttttaaatttagtccctataaaattttaatggtaattttagtcttctaaaatattgtagtttgcaagaat 20986030  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 33753076 - 33753026
Alignment:
Q  60 aaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 110  Q
    |||||||||||| | ||||||| |||| | |||||||||||||||||||||    
T  33753076 aaaattttaatggtgattttagccctccataatattgtagtttgtaagaat 33753026  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 13392847 - 13392908
Alignment:
Q  45 aagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 106  Q
    |||||||||  ||| ||| |||||||| ||||||||||| || | |||||||||||||||||    
T  13392847 aagtttagtccctataaagttttaatgttaattttagtcatccaaaatattgtagtttgtaa 13392908  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 16545544 - 16545483
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 102  Q
    ||||||||||| |  ||| |||||||||||||||| |||| ||||| | |||||||||||||    
T  16545544 ttttaagtttaatccctataaaattttaatgataaatttactcctccaaaatattgtagttt 16545483  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 253909 - 253814
Alignment:
Q  12 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaag 107  Q
    ||||||||| |  |||||||||||  |  ||||||||||||||  || |||||||||||  ||||||||||||| || |||||| |||||||||||    
T  253909 atgtttttaattcctataaaattatgagtttttaagtttagttcatataaaattttaatagtaattttagtcctttaaaatattatagtttgtaag 253814  T

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Target: scaffold0005; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 33600 - 33559
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagt 82  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  33600 ttttaagtttagttcctataaaattttaatgataattttagt 33559  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 363207 - 363166
Alignment:
Q  41 ttttaagtttagtttctagaaaattttaatgataattttagt 82  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  363207 ttttaagtttagttcctataaaattttaatgataattttagt 363166  T

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Target: scaffold0536 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 3875 - 3946
Alignment:
Q  27 ataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgta 98  Q
    ||||||||| ||  ||||||||||||| |||  ||| |||||||||||||||||||| | || |||||||||    
T  3875 ataaaattacaagtttttaagtttagtctctctaaacttttaatgataattttagtcatttataatattgta 3946  T

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