View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12781_high_2 (Length: 485)
Name: NF12781_high_2
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12781_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 25 - 478
Target Start/End: Complemental strand, 28477947 - 28477494
Alignment:
| Q |
25 |
ggaagatcagctccaattccatttcctcttggaaatctaaagcaacttggtctatcatctatagctgctgcagttgcaaccatgttcatcagttcagctt |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28477947 |
ggaagatcagctccaattccatttcctcttggaaatctaaagcaacttggtctatcatctatagctgctgcagttgcaaccatgttcatcagttcagctt |
28477848 |
T |
|
| Q |
125 |
catcagatggagccattacaatcatgttgggcaagcaagccatgaaagtgatatcaaaagctccacaatgagttggtccatctgcaccaactaaaccagc |
224 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
28477847 |
catcagatggagccatgacaatcatgttgggcaagcaagccatgaaggtgatatcaaatgctccacaatgggttggcccatctgcaccaactaaaccagc |
28477748 |
T |
|
| Q |
225 |
tctatccatcgcaaatcgaacaggtagtttttgaagatcaacatcatggactacctgatcatatccacgttgtaggaatgttgaataaatagcacaaaac |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28477747 |
tctatccatcgcaaatcgaacaggtagtttttgaagatcaacatcatggactacctgatcatatccacgttgtaggaatgttgaataaatagcacaaaat |
28477648 |
T |
|
| Q |
325 |
ggcttgagaccttcagcggctaaccctgctgcaaatgtaacagcatgttgttcagctatgccgacatcgaaacatcggtctggaaaccttttctggaagt |
424 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28477647 |
ggcttgagaccttcagtggctaaccctgctgcaaatgtaacagcatgttgttcagctatgccgacatcgaaacatcggtctggaaaccttttctggaagt |
28477548 |
T |
|
| Q |
425 |
aatttaggccagttccaccacccattgctgcatgaattgccactatcttattgt |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28477547 |
aatttaggccagttccaccacccattgctgcatgaattgccactatcttattgt |
28477494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 25 - 478
Target Start/End: Complemental strand, 28469608 - 28469155
Alignment:
| Q |
25 |
ggaagatcagctccaattccatttcctcttggaaatctaaagcaacttggtctatcatctatagctgctgcagttgcaaccatgttcatcagttcagctt |
124 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28469608 |
ggaagattggctccaattccatttcctcttggaaatctaaagcaacttggtctatcatctatagctgctgcagttgcaaccatgttcatcagttcagctt |
28469509 |
T |
|
| Q |
125 |
catcagatggagccattacaatcatgttgggcaagcaagccatgaaagtgatatcaaaagctccacaatgagttggtccatctgcaccaactaaaccagc |
224 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
28469508 |
catcagatggagccatgacaatcatgttgggcaagcaagccatgaaggtgatatcaaatgctccacaatgggttggcccatctgcaccaactaaaccagc |
28469409 |
T |
|
| Q |
225 |
tctatccatcgcaaatcgaacaggtagtttttgaagatcaacatcatggactacctgatcatatccacgttgtaggaatgttgaataaatagcacaaaac |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
28469408 |
tctatccatcgcaaatcgaacaggtagtttttgaagatcaacatcatggactacctgatcatatccgcgttgtaggaatgatgaataaatagcacaaaat |
28469309 |
T |
|
| Q |
325 |
ggcttgagaccttcagcggctaaccctgctgcaaatgtaacagcatgttgttcagctatgccgacatcgaaacatcggtctggaaaccttttctggaagt |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28469308 |
ggcttgagaccttcagcggctaaccctgctgcaaatgtaacagcatgttgttcagctatgccgacatcgaaacatcggtctggaaaccttttctggaagt |
28469209 |
T |
|
| Q |
425 |
aatttaggccagttccaccacccattgctgcatgaattgccactatcttattgt |
478 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28469208 |
aatttagaccagttccaccacccattgctgcatgaattgccactatcttattgt |
28469155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 191
Target Start/End: Original strand, 49713167 - 49713264
Alignment:
| Q |
94 |
gcagttgcaaccatgttcatcagttcagcttcatcagatggagccattacaatcatgttgggcaagcaagccatgaaagtgatatcaaaagctccaca |
191 |
Q |
| |
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||||| || ||||||| || |||||||| ||||||||||| ||||| |||||||| || || ||||| | |||||| || |||||||| |||||||| |
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| T |
49713167 |
gcagtcgccaccatgtgcacaagttcagcctcatcagatggtgccatgacaatcatatttggtaagcatgacatgaacgttatatcaaatgctccaca |
49713264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 241
Target Start/End: Complemental strand, 49147927 - 49147753
Alignment:
| Q |
67 |
caacttggtctatcatctatagctgctgcagttgcaaccatgttcatcagttcagcttcatcagatggagccattacaatcatgttgggcaagcaagcca |
166 |
Q |
| |
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|||||||||| ||| || || || |||||||| |||||||||| || || ||||||||||| |||||||| || | ||||||||| | ||| |||| |
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| T |
49147927 |
caacttggtcgatcgtcaatggccgctgcagtggcaaccatgtggcaaagctctgcttcatcagaaggagccatcaccaccatgttgggtaggcatgcca |
49147828 |
T |
|
| Q |
167 |
tgaaagtgatatcaaaagctccacaatgagttggtccatctgcaccaactaaaccagctctatccatcgcaaatc |
241 |
Q |
| |
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| ||||||| ||||||| ||| | || || || || |||| |||||||| |||||||| ||||| ||||||| |
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| T |
49147827 |
taaaagtgacgtcaaaagaaccagagtgtgtaggaccgtctgatccaactaacccagctctgtccattgcaaatc |
49147753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 400
Target Start/End: Original strand, 6864748 - 6864838
Alignment:
| Q |
310 |
taaatagcacaaaacggcttgagaccttcagcggctaaccctgctgcaaatgtaacagcatgttgttcagctatgccgacatcgaaacatc |
400 |
Q |
| |
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||||| || ||||| ||||| ||||||||| ||||| || || ||||| |||||||| |||||||| ||||| || ||||||||||||| |
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| T |
6864748 |
taaattgcgcaaaaaggcttaagaccttcacaggctagaccagcagcaaacgtaacagcgtgttgttctgctatccctacatcgaaacatc |
6864838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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