View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12781_high_6 (Length: 407)

Name: NF12781_high_6
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12781_high_6
NF12781_high_6
[»] chr2 (4 HSPs)
chr2 (14-397)||(15867328-15867711)
chr2 (266-394)||(45198967-45199095)
chr2 (278-396)||(21982040-21982158)
chr2 (17-131)||(21982577-21982691)
[»] chr4 (2 HSPs)
chr4 (14-393)||(53076822-53077201)
chr4 (144-396)||(48438652-48438904)
[»] chr1 (2 HSPs)
chr1 (55-397)||(1460648-1460990)
chr1 (142-397)||(1498346-1498601)
[»] chr3 (1 HSPs)
chr3 (200-396)||(50274610-50274806)
[»] chr8 (2 HSPs)
chr8 (55-396)||(26788217-26788558)
chr8 (341-393)||(973837-973889)
[»] chr6 (1 HSPs)
chr6 (144-318)||(3153247-3153421)


Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 14 - 397
Target Start/End: Original strand, 15867328 - 15867711
Alignment:
Q  14 ggctcaacttgcaaacaaggagaaatcgaagccgttgttattgcaaccggtgtccacacattctttggaaaagcagcacatttagtggacagtacaaaca 113  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15867328 ggctcaacttgcaaacaaggagaaatcgaagccgttgttatagccaccggtgtccacacattctttggaaaagcagcacacttagtggacagtacaaaca 15867427  T
Q  114 atgttggacatttccaaacggttctcagagcaattggaaacttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15867428 atgttggacatttccaaacggttctcagagcaattggaaacttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgat 15867527  T
Q  214 ccaacaccgcaaatatcgtgaaggaatcgacaaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggct 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15867528 ccaacaccgcaaatatcgtgaaggaatcgacaaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggct 15867627  T
Q  314 attggttctcataaacttgctcaacaaggtgctattacaaagagaatgactgccattgaagaaatggctggtatggatgttctt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15867628 attggttctcataaacttgctcaacaaggtgctattacaaagagaatgactgccattgaagaaatggctggtatggatgttctt 15867711  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 266 - 394
Target Start/End: Complemental strand, 45199095 - 45198967
Alignment:
Q  266 ggaggaattcctattgctatgccaactgttttgtctgtgacaatggctattggttctcataaacttgctcaacaaggtgctattacaaagagaatgactg 365  Q
    ||||| ||||||||||| |||||||| || ||||| |||||||||||||||||||| ||||   |  |||||||||||||||| |||||||||||||| |    
T  45199095 ggagggattcctattgcaatgccaacagtgttgtcagtgacaatggctattggttcacataggttgtctcaacaaggtgctatcacaaagagaatgacag 45198996  T
Q  366 ccattgaagaaatggctggtatggatgtt 394  Q
    ||||||| ||||||||||| |||||||||    
T  45198995 ccattgaggaaatggctgggatggatgtt 45198967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 278 - 396
Target Start/End: Complemental strand, 21982158 - 21982040
Alignment:
Q  278 attgctatgccaactgttttgtctgtgacaatggctattggttctcataaacttgctcaacaaggtgctattacaaagagaatgactgccattgaagaaa 377  Q
    ||||||||||||||||| ||||||||||| ||||||||||| |||||    ||| |||| ||||| ||||| || ||||| ||||| ||||| |||||||    
T  21982158 attgctatgccaactgtcttgtctgtgaccatggctattggatctcaccgcctttctcagcaaggagctatcaccaagaggatgacagccatcgaagaaa 21982059  T
Q  378 tggctggtatggatgttct 396  Q
    |||| || |||||||||||    
T  21982058 tggcaggaatggatgttct 21982040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 21982691 - 21982577
Alignment:
Q  17 tcaacttgcaaacaaggagaaatcgaagccgttgttattgcaaccggtgtccacacattctttggaaaagcagcacatttagtggacagtacaaacaatg 116  Q
    ||||||||||| ||||| |||||||| ||  |||| ||||| || ||||||||||| |||||||| || || |||||  | || || || || |||||||    
T  21982691 tcaacttgcaagcaaggtgaaatcgaggctattgtcattgccactggtgtccacaccttctttgggaaggctgcacaccttgttgatagcaccaacaatg 21982592  T
Q  117 ttggacatttccaaa 131  Q
    |||| || |||||||    
T  21982591 ttggtcacttccaaa 21982577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 14 - 393
Target Start/End: Complemental strand, 53077201 - 53076822
Alignment:
Q  14 ggctcaacttgcaaacaaggagaaatcgaagccgttgttattgcaaccggtgtccacacattctttggaaaagcagcacatttagtggacagtacaaaca 113  Q
    ||||| ||||| |||||||| ||| | ||||| ||||| |||||||| |||||||||||||| || || |||||||| ||  | ||||||||||| |||     
T  53077201 ggctccacttgtaaacaaggtgaacttgaagctgttgtcattgcaactggtgtccacacatttttcgggaaagcagctcaccttgtggacagtaccaacc 53077102  T
Q  114 atgttggacatttccaaacggttctcagagcaattggaaacttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgat 213  Q
    | ||||| ||||| || | ||| || |  |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| || ||    
T  53077101 aagttgggcattttcagaaggtgcttactgcaattggaaacttctgcatttgttcgattgcagttggtatgttggctgagatcatagtcatgtacccaat 53077002  T
Q  214 ccaacaccgcaaatatcgtgaaggaatcgacaaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggct 313  Q
     || |||||||| ||  | || ||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||     
T  53077001 tcagcaccgcaagtacagagatggaattgacaatcttttggtccttttgatcggaggaattcccattgctatgcctactgtgttgtctgtaacaatggcc 53076902  T
Q  314 attggttctcataaacttgctcaacaaggtgctattacaaagagaatgactgccattgaagaaatggctggtatggatgt 393  Q
    || ||||| ||    ||  |||||||||||||||| || ||  | |||||||| ||||||||||||||||||||||||||    
T  53076901 atcggttcacaccggctctctcaacaaggtgctatcaccaaacgtatgactgctattgaagaaatggctggtatggatgt 53076822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 396
Target Start/End: Complemental strand, 48438904 - 48438652
Alignment:
Q  144 caattggaaacttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgatccaacaccgcaaatatcgtgaaggaatcga 243  Q
    ||||||||||||| ||||| || ||||||||||| || ||||||  |||||| || || ||||| || ||||||||  |   |||| | ||||| || ||    
T  48438904 caattggaaacttctgtatctgctccattgcagtaggaatgttgattgagattattgtgatgtacccaatccaacaaagatcatatagagaaggtattga 48438805  T
Q  244 caaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggctattggttctcataaacttgctcaacaaggt 343  Q
    |||  |  | || ||| | |||||||| || || || || |||||||| |||||||||||||| ||||||||||| |||||     |  |||| |||||     
T  48438804 caatttgctggttcttctcatcggaggtatcccgatcgccatgccaacagttttgtctgtgaccatggctattggatctcaccgtttgtctcagcaagga 48438705  T
Q  344 gctattacaaagagaatgactgccattgaagaaatggctggtatggatgttct 396  Q
    |||||||| ||||| ||||| || |||||||||||||| || |||||||||||    
T  48438704 gctattaccaagaggatgacagctattgaagaaatggccgggatggatgttct 48438652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 55 - 397
Target Start/End: Original strand, 1460648 - 1460990
Alignment:
Q  55 tgcaaccggtgtccacacattctttggaaaagcagcacatttagtggacagtacaaacaatgttggacatttccaaacggttctcagagcaattggaaac 154  Q
    |||||| ||||||||||| || || || |||||||| ||||| || || ||||| ||| | |||||||| || |||   || || | ||||||||||||     
T  1460648 tgcaactggtgtccacacctttttcggcaaagcagctcatttggttgatagtactaaccaagttggacactttcaacaagtgcttacagcaattggaaat 1460747  T
Q  155 ttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgatccaacaccgcaaatatcgtgaaggaatcgacaaccttttag 254  Q
    || ||||||||||| ||||| ||||| ||  |   |||||| || || ||||||||||| ||||||||||| ||| | || ||||||||||| ||||| |    
T  1460748 ttctgtatttgttcaattgctgttggaatactcattgagattattgtgatgtatccgatacaacaccgcaagtatagagatggaatcgacaatcttttgg 1460847  T
Q  255 tccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggctattggttctcataaacttgctcaacaaggtgctattacaaa 354  Q
    | |||||||| || |||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||  ||| | || |||||||| ||||||||    
T  1460848 tgcttttgataggtggaattccaattgcaatgccaactgttttgtctgtcactatggctattggttctcataggctttcacagcaaggtgcaattacaaa 1460947  T
Q  355 gagaatgactgccattgaagaaatggctggtatggatgttctt 397  Q
     |||||||| || ||||| ||||||||||| ||||||||||||    
T  1460948 aagaatgacagctattgaggaaatggctggaatggatgttctt 1460990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 142 - 397
Target Start/End: Complemental strand, 1498601 - 1498346
Alignment:
Q  142 agcaattggaaacttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgatccaacaccgcaaatatcgtgaaggaatc 241  Q
    ||||||||||||||| || |||||||| || ||  |||| || |||| |||| | ||||| ||||||||||| ||||||||||| ||| | || ||||||    
T  1498601 agcaattggaaacttctgcatttgttcaatcgctattggaatattggttgagcttatagtgatgtatccgatacaacaccgcaagtatagagatggaatc 1498502  T
Q  242 gacaaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggctattggttctcataaacttgctcaacaag 341  Q
    ||||| ||||| || |||||||| || |||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||  ||| | || ||||    
T  1498501 gacaatcttttggtgcttttgattggtggaattccaattgcaatgccaactgttttgtctgtcactatggctattggttctcataggctttcacagcaag 1498402  T
Q  342 gtgctattacaaagagaatgactgccattgaagaaatggctggtatggatgttctt 397  Q
    |||| |||||||| |||||||| || ||||| ||||||||||| ||||||||||||    
T  1498401 gtgcaattacaaaaagaatgacagctattgaggaaatggctggaatggatgttctt 1498346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 200 - 396
Target Start/End: Original strand, 50274610 - 50274806
Alignment:
Q  200 gtcatgtatccgatccaacaccgcaaatatcgtgaaggaatcgacaaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgt 299  Q
    |||||||||||||| ||||||||||| ||| | || ||||| ||||| ||||| || || ||||| ||||||||||| ||||||||||||||||||||||    
T  50274610 gtcatgtatccgatacaacaccgcaagtatagagacggaattgacaatcttttggttctattgattggaggaattccaattgctatgccaactgttttgt 50274709  T
Q  300 ctgtgacaatggctattggttctcataaacttgctcaacaaggtgctattacaaagagaatgactgccattgaagaaatggctggtatggatgttct 396  Q
    |||| || ||||||||||||||||| | |||  ||||||||||||| ||||||||||||||||| || ||||| |||||||| || |||||||||||    
T  50274710 ctgttactatggctattggttctcacagactctctcaacaaggtgcaattacaaagagaatgacagctattgaggaaatggcagggatggatgttct 50274806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 55 - 396
Target Start/End: Original strand, 26788217 - 26788558
Alignment:
Q  55 tgcaaccggtgtccacacattctttggaaaagcagcacatttagtggacagtacaaacaatgttggacatttccaaacggttctcagagcaattggaaac 154  Q
    |||||| ||||||||||| || || ||||||||||| ||||| || |||||||| ||  | |||||||| || ||||  || || | ||||||||||||     
T  26788217 tgcaactggtgtccacacctttttcggaaaagcagctcatttggttgacagtactaatcaagttggacactttcaaaaagtgcttacagcaattggaaat 26788316  T
Q  155 ttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgatccaacaccgcaaatatcgtgaaggaatcgacaaccttttag 254  Q
    || || || ||||| ||||||||||| ||  | | |||||| || || ||||||||||| ||||| ||||| ||| | || ||||| || || ||||| |    
T  26788317 ttctgcatctgttcaattgcagttggaatactcgttgagattattgtgatgtatccgatacaacatcgcaactatagagatggaattgataatcttttgg 26788416  T
Q  255 tccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggctattggttctcataaacttgctcaacaaggtgctattacaaa 354  Q
    | || |||||||| |||||||| ||||| ||||||||||| || ||||| || ||||||||||||||||| |  ||| | || |||||||| || |||||    
T  26788417 tgctcttgatcggtggaattccaattgcaatgccaactgtattatctgttactatggctattggttctcacaggctttcacagcaaggtgcaataacaaa 26788516  T
Q  355 gagaatgactgccattgaagaaatggctggtatggatgttct 396  Q
     |||||||| || ||||| ||||||||||| |||||||||||    
T  26788517 aagaatgacagctattgaggaaatggctggaatggatgttct 26788558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 973889 - 973837
Alignment:
Q  341 ggtgctattacaaagagaatgactgccattgaagaaatggctggtatggatgt 393  Q
    |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||    
T  973889 ggtgctataacaaagagaatgactgctattgaagaaatggctggaatggatgt 973837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 318
Target Start/End: Original strand, 3153247 - 3153421
Alignment:
Q  144 caattggaaacttttgtatttgttccattgcagttggtatgttggctgagatcatagtcatgtatccgatccaacaccgcaaatatcgtgaaggaatcga 243  Q
    ||||||| |||||||| || ||||| |||||  |||| ||| | | ||||||||| ||||||||||| || |||||| | |||||||||   ||||||||    
T  3153247 caattgggaacttttgcatatgttcaattgctattggaatgattgttgagatcattgtcatgtatccaattcaacacaggaaatatcgtcctggaatcga 3153346  T
Q  244 caaccttttagtccttttgatcggaggaattcctattgctatgccaactgttttgtctgtgacaatggctattgg 318  Q
    ||| ||  | || ||| | || || |||||||||||||| ||||| ||||||||||| || |||||||| |||||    
T  3153347 caatctacttgtgcttctcattggtggaattcctattgccatgcctactgttttgtcagtcacaatggcaattgg 3153421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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