View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12781_high_7 (Length: 394)
Name: NF12781_high_7
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12781_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 48 - 377
Target Start/End: Original strand, 43620223 - 43620556
Alignment:
| Q |
48 |
gtaacagtcacgtcacattttttatgttgtggggaatcgcagtcaaatgtagttgataatcgatgtcactctggctgggagactgggacatcaaaacatg |
147 |
Q |
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| T |
43620223 |
gtaacagtcacgtcacattttttatgttgtggagaatcgcagtcaaatgtagttgataatcgatgtcactctggctgggagactgggacatcaaaacatg |
43620322 |
T |
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| Q |
148 |
gaccat---gatgttgaatatataatattgctttaattttttatgtatgtttaggttagctttactggttcaacacaaactgggcgtgagataatgcaag |
244 |
Q |
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| T |
43620323 |
gaccatattgatgttgaatatataatattgctttaattttttatgtatgtttaggttagctttactggttcaacacaaactgggcgtgagataatgcaag |
43620422 |
T |
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| Q |
245 |
ctgcagctaagagtaacttgaaacatgtttcacttgaattaggaggcaagtcacccctcataatatttgatgatgctgatattgaaaaagcta-ctgaac |
343 |
Q |
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| T |
43620423 |
ctgcagctaagagtaacttgaaacatgtttcacttgaattaggaggcaagtcacccctcataatatttgatgatgctgatattgacaaagctatctgaac |
43620522 |
T |
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| Q |
344 |
ttgctctattaggcatcctatttaacaaggtgat |
377 |
Q |
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| T |
43620523 |
ttgctctattaggcatcctatttaacaaggtgat |
43620556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 229 - 374
Target Start/End: Original strand, 43627035 - 43627180
Alignment:
| Q |
229 |
cgtgagataatgcaagctgcagctaagagtaacttgaaacatgtttcacttgaattaggaggcaagtcacccctcataatatttgatgatgctgatattg |
328 |
Q |
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| T |
43627035 |
cgtgaaataatgcaagctgcagctaagagtaatttaaaacatgtttcacttgaattaggaggcaagtcacctctcataattttcgatgatgcagacatag |
43627134 |
T |
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| Q |
329 |
aaaaagctactgaacttgctctattaggcatcctatttaacaaggt |
374 |
Q |
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| T |
43627135 |
acaaagctgttgagctagctcttttgggtatcctagctaacaaggt |
43627180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 43619571 - 43619616
Alignment:
| Q |
10 |
ggacattgatgcagtaagcgagatttaaaattgtggtggtaacagt |
55 |
Q |
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| T |
43619571 |
ggacattgatgcggtaagtgagatttaaaattgtggtggtaacagt |
43619616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 245 - 376
Target Start/End: Complemental strand, 32407515 - 32407384
Alignment:
| Q |
245 |
ctgcagctaagagtaacttgaaacatgtttcacttgaattaggaggcaagtcacccctcataatatttgatgatgctgatattgaaaaagctactgaact |
344 |
Q |
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||||||||| ||||| ||||||| |||||||||||||||||||| || ||||||||| |||| ||||||||||||||| || | |||||| ||||||| |
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| T |
32407515 |
ctgcagctagaagtaatttgaaaccagtttcacttgaattaggaggaaaatcacccctcttaatttttgatgatgctgatgttaataaagctgctgaact |
32407416 |
T |
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| Q |
345 |
tgctctattaggcatcctatttaacaaggtga |
376 |
Q |
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| T |
32407415 |
tgctctccttggcattttatttaataaggtga |
32407384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 32434311 - 32434437
Alignment:
| Q |
236 |
taatgcaagctgcagctaagagtaacttgaaacatgtttcacttgaattaggaggcaagtcacccctcataatatttgatgatgctgatattgaaaaagc |
335 |
Q |
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||||||| |||||||| |||||| ||||| | || ||||||||||||||||||||||| || | |||| || |||||||||||| |||| ||||| |
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| T |
32434311 |
taatgcaggctgcagcattgagtaatttgaagccggtatcacttgaattaggaggcaagtcgcctgttttaattttcgatgatgctgatgttgataaagc |
32434410 |
T |
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| Q |
336 |
tactgaacttgctctattaggcatcct |
362 |
Q |
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| T |
32434411 |
tgttgatctcgctctatttggaatcct |
32434437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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