View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12781_high_8 (Length: 385)
Name: NF12781_high_8
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12781_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 24 - 373
Target Start/End: Complemental strand, 40514214 - 40513864
Alignment:
| Q |
24 |
tatatatgaagcttttgctcatttgcattttcttgcttcaactat-gtgttctaaaatgcttttacacgttcttgttcgaatattggtatttgatcagaa |
122 |
Q |
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| T |
40514214 |
tatatatgaagcttttgctcatttgcattttcttgcttcaactatagtgttctaaaatgcttttacacgttcttgttcgaatattggtatttgaacagaa |
40514115 |
T |
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| Q |
123 |
taagaatagagtgctaattgccttagcgcgttaccatcatcgatatttgtggccacaatacattaaccaattttttcttgttatctagattcatagtttt |
222 |
Q |
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| T |
40514114 |
taagaatagagtgctaattgccttagtgcgttaccatcatcgatatttgtggccacaatacattaaccaattttttcttgttatctagattcatagtttt |
40514015 |
T |
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| Q |
223 |
ggtcgaagagaaatttgattcttttggaaaaccagtatgggatttgataatccaagacctgaaaggtgtgtgtttcctaaattccctcaaataattttca |
322 |
Q |
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| T |
40514014 |
ggtcgaagagaaatttgattcttttggaaaaccagtatgggatttgataatccaagatctgaaaggt--gtgtttcctaaattccctcaaataattttca |
40513917 |
T |
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| Q |
323 |
aaattccaagttatttag--ctaattagtcttcaagtttatgaacttttcata |
373 |
Q |
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| T |
40513916 |
aaattccaagttatttagtactaattagtcttcaagtttatgaacttttcata |
40513864 |
T |
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