View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12781_low_12 (Length: 382)
Name: NF12781_low_12
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12781_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 33806388 - 33806020
Alignment:
| Q |
1 |
tcagaaattccccaggtaatattgttatagtcaatagtaaaggaaactagttggtcagtaatctctaaaatcttagggttaaggtttgaagtacacatgc |
100 |
Q |
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| T |
33806388 |
tcagaaattccacaggtaatattgttatagtcaatagtaaaggaaactagttggtcagtaatctctaaaatcttagggttaaggtttgaagtacacaggc |
33806289 |
T |
|
| Q |
101 |
accaaagattaggcttcaaattgtttctaatattagaaccgaaaagtttgccaccaagtctactaaaccaaactctcggaagagaatcatgctccaacca |
200 |
Q |
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| T |
33806288 |
accaaagattaggcttcaaattttttctaatattagaaccgaaaagtttgtcaccatgtctactaaaccaaactctaggaagagaatcatgctccaacca |
33806189 |
T |
|
| Q |
201 |
tggttcactaataaaacaaattttggtttattaacatcaagaaacctcttaagagctaatctagtggaggcgttagctaaaccccttacattctagaaaa |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
33806188 |
tggttcactaataaaacaaaatttggtttattaacatcaagaaacctcttaagagctaatctagtgggggcgttagctaaaccccttacattccagaaaa |
33806089 |
T |
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| Q |
301 |
aactctttattgtgaaggatttgttttaccaatccttgatctagttgcatatttgttgtttgctgatct |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33806088 |
aactctttattgtgaaggatttgttttaccaatccttgatctagttgcatatttgttgtttgctgatct |
33806020 |
T |
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