View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12781_low_13 (Length: 375)
Name: NF12781_low_13
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12781_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 11196564 - 11196902
Alignment:
| Q |
18 |
acatcaagctctcatcttcaagtatctcaaagctggtttatctgttcctcctgacctccttttacctattcggaaaagtcttcaattcatgtctcatcca |
117 |
Q |
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| T |
11196564 |
acatcaagctctcatcttcaagtatctcaaagctggtttatctgttcctcctgacctccttttacctattcggaaaagtcttcaattcatgtctcatcca |
11196663 |
T |
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| Q |
118 |
tctcgtaagtacccaacaacgttaatcttccttattttgtctctatattgatttacaactataaagttttgatttttgtttcagtgggttattatggnnn |
217 |
Q |
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| T |
11196664 |
tctcgtaagtacccaacaacgttaatcttccttattttgtctctatattgatttacaactataaagttttgatttttgtttcagtgggttattatggaaa |
11196763 |
T |
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| Q |
218 |
nnnnnttgacccagaaccaggtaggtgtagaagaacagatggtaaaaaatggagatgttctagagatgtagctcctaataacaggtactgtgaaaggcat |
317 |
Q |
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| T |
11196764 |
aaaaattgacccagaaccaggtaggtgtagaagaacagatggtaaaaaatggagatgtgctagggatgctcatcctgattctaagtactgtgaccggcat |
11196863 |
T |
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| Q |
318 |
atgcatagaggtcgtccccgttcaagaaagcctgtggaa |
356 |
Q |
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| T |
11196864 |
atgattcgacgtcgttaccgttcaagaaagcctgtggaa |
11196902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 237 - 375
Target Start/End: Original strand, 42183694 - 42183832
Alignment:
| Q |
237 |
ggtaggtgtagaagaacagatggtaaaaaatggagatgttctagagatgtagctcctaataacaggtactgtgaaaggcatatgcatagaggtcgtcccc |
336 |
Q |
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| T |
42183694 |
ggtaggtgcaaaagaacagatggtaaaaaatggagatgttctaaagatgtagctcttaataacaggtattgtgaaaggcatatgcatagaggtcgtcccc |
42183793 |
T |
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| Q |
337 |
gttcaagaaagcctgtggaacttaacacaaataacaata |
375 |
Q |
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| T |
42183794 |
gttcaagaaagcctgtggaacttcacacaaataacaata |
42183832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 356
Target Start/End: Original strand, 52051944 - 52052075
Alignment:
| Q |
225 |
gacccagaaccaggtaggtgtagaagaacagatggtaaaaaatggagatgttctagagatgtagctcctaataacaggtactgtgaaaggcatatgcata |
324 |
Q |
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| T |
52051944 |
gacccagagccaggtaggtgtagaagaacagatggaaagaaatggagatgttcaaaagaagcatatccagattcaaagtactgtgaaaggcacatgcata |
52052043 |
T |
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| Q |
325 |
gaggtcgtccccgttcaagaaagcctgtggaa |
356 |
Q |
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| T |
52052044 |
gagggaaaaaccgttcaagaaagcctgtggaa |
52052075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 18199929 - 18199883
Alignment:
| Q |
228 |
ccagaaccaggtaggtgtagaagaacagatggtaaaaaatggagatg |
274 |
Q |
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| T |
18199929 |
ccagagccaggtagatgtagaagaacagatggaaaaaaatggagatg |
18199883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 7246679 - 7246630
Alignment:
| Q |
225 |
gacccagaaccaggtaggtgtagaagaacagatggtaaaaaatggagatg |
274 |
Q |
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| T |
7246679 |
gacccagagccagggaggtgcagaagaacagatggcaagaaatggagatg |
7246630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 7246602 - 7246546
Alignment:
| Q |
302 |
gtactgtgaaaggcatatgcatagaggtcgtccccgttcaagaaagcctgtggaact |
358 |
Q |
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| T |
7246602 |
gtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaact |
7246546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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