View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12781_low_14 (Length: 363)
Name: NF12781_low_14
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12781_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 32659001 - 32658665
Alignment:
| Q |
13 |
agcagagaaacatatatgaacacaataagcaggtgactaggtgacgactactctatatgacttggttacatttcatttttgcttgaaactactcatacac |
112 |
Q |
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| T |
32659001 |
agcagagaaacatatatgaacacaataagcaggtgactaggtgacgactactctatatgacttggttacatttcatttttgcttgaaactactcatacac |
32658902 |
T |
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| Q |
113 |
accatgattactatttcactttcgttatgcatataggatattggtcatattcccactatcccacgactttgaccaaagcaagatatatcagtgatcttat |
212 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32658901 |
accatgattactatttcactttcgttatgcatataagatattggtcatattcccactatcccacgactttgaccaaagcaagatatatcagtgatcttat |
32658802 |
T |
|
| Q |
213 |
attggatttctcaaaatgcattttataattcactgggattaaagatgtttaatgtgctgaaatggctgattttgtcatcatgctaatataataaatcagt |
312 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32658801 |
attggacttctcaaaatgcattttataattcactgggattaaagatgtttaatgtgctgaaatggctgattttgtcatcatgctaatataataaatcagt |
32658702 |
T |
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| Q |
313 |
tgattctttccaggtttcactcatgcgaacaacagtg |
349 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
32658701 |
tgattctttccaggtttcactcatgcgaacaacagtg |
32658665 |
T |
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