View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12781_low_16 (Length: 355)
Name: NF12781_low_16
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12781_low_16 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 2 - 355
Target Start/End: Original strand, 38816319 - 38816672
Alignment:
| Q |
2 |
caactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgt |
101 |
Q |
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| T |
38816319 |
caactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgt |
38816418 |
T |
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| Q |
102 |
ccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaa |
201 |
Q |
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| T |
38816419 |
ccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaa |
38816518 |
T |
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| Q |
202 |
gaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgagacttcatattaaaggtgtgtccagtgtccaacagatgtcagt |
301 |
Q |
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| T |
38816519 |
gaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgagacttcatattaaaggtgtgtgcagtgtccaacagatgtcagt |
38816618 |
T |
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| Q |
302 |
ctccaacactatcacgattcacgaatataactatgaagcacggacactcctcga |
355 |
Q |
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| T |
38816619 |
ctccaacactatcacgattcacgaatataactatgaatcacggacactcctcga |
38816672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
| Q |
51 |
aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa |
150 |
Q |
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| T |
38821782 |
aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca |
38821878 |
T |
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| Q |
151 |
ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca |
200 |
Q |
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| T |
38821879 |
ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca |
38821928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 309
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
| Q |
271 |
aaggtgtgtccagtgtccaacagatgtcagtctccaaca |
309 |
Q |
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| T |
35665559 |
aaggtgtgtccagtgtccaacacatgtcagtttccaaca |
35665597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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