View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12781_low_17 (Length: 343)
Name: NF12781_low_17
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12781_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 42214822 - 42214510
Alignment:
| Q |
20 |
cctcatgtccatcaaattccttgagccccaccaatgtctcaattgcacactctttgtccaaaacaatgcttgaatcaaaatcatcatcacctttttgttc |
119 |
Q |
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| T |
42214822 |
cctcatgtccatcaaattccttgagccccaccaatgtctcaattgcacactctttgtccaaaacaatgcttgaatcaaaatcatcatcacctttttgttc |
42214723 |
T |
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| Q |
120 |
atccctctttatccgagatgcagttgatccagagtcgaaaacaagtcttttcctaggtgagctacaaaatgagctctcctcagaatcccaattaaattcc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42214722 |
atccctctttatccgagatgcagttgatccagagtcgaaaacaagtcttttcctaggtgagctacaaaatgagctctcctcagaatcccaactaaattcc |
42214623 |
T |
|
| Q |
220 |
cctttaaatggccaaaaaagtggttcatcatcattcaactcttctgcgtctgcagtttctatccaatgttctgctgaaaaaacatctggcttttcacaat |
319 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42214622 |
cctttaaatggccaaaaaagtggttcatcaccattcaactcttctgtgtctgcagtttctatccgatgttctgctgaaaaaacatctggcttttcacaat |
42214523 |
T |
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| Q |
320 |
gtgcttcagtgaa |
332 |
Q |
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||||||||||||| |
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| T |
42214522 |
gtgcttcagtgaa |
42214510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 42208016 - 42207709
Alignment:
| Q |
20 |
cctcatgtccatcaaattccttgagccccaccaatgtctcaattgcacactctttgtc-----caaaaca----------------atgcttgaatcaaa |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||||||||| |
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| T |
42208016 |
cctcatgtccatcaaattccttgagccccaccaatgtctcaattgcacactctttgtccagatcaaaatattccaaaggaatatccattcttgaatcaaa |
42207917 |
T |
|
| Q |
99 |
atcatcatcacctttttgttcatccctctttatccgagatgcagttgatccagagtcgaaaacaagtcttttcctaggtgagctacaaaatgagctctcc |
198 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |||||||| ||| |
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| T |
42207916 |
atcctcatcacctttttgttcatccccctttatccgagatgcggttgatctagagtcgaaaacaagtcttttactaggtgagctacagaatgagctttcc |
42207817 |
T |
|
| Q |
199 |
tcagaatcccaattaaattcccctttaaatggccaaaaaagtggttcatcatcattcaactcttctgcgtctgcagtttctatccaatgttctgctgaaa |
298 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||| ||||||| | |||||||||||||| |
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| T |
42207816 |
tcagaatcccaattgaattccccttcaaatggccaaaaaagtggctcatcgccattcaactcttctatgtctgtggtttctaacagatgttctgctgaaa |
42207717 |
T |
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| Q |
299 |
aaacatct |
306 |
Q |
| |
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|| ||||| |
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| T |
42207716 |
aagcatct |
42207709 |
T |
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