View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12781_low_27 (Length: 271)

Name: NF12781_low_27
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12781_low_27
NF12781_low_27
[»] chr3 (5 HSPs)
chr3 (1-217)||(9766279-9766495)
chr3 (130-209)||(21973609-21973690)
chr3 (130-209)||(21996040-21996121)
chr3 (29-133)||(46125576-46125684)
chr3 (138-209)||(22156719-22156792)
[»] chr8 (1 HSPs)
chr8 (1-217)||(43651015-43651231)
[»] chr5 (2 HSPs)
chr5 (1-217)||(21114224-21114440)
chr5 (137-216)||(38929791-38929871)
[»] chr7 (2 HSPs)
chr7 (137-216)||(3572868-3572948)
chr7 (130-209)||(9331623-9331704)
[»] chr4 (3 HSPs)
chr4 (130-209)||(39481365-39481446)
chr4 (130-204)||(51862628-51862704)
chr4 (20-103)||(39481456-39481542)
[»] scaffold0039 (1 HSPs)
scaffold0039 (29-122)||(82092-82189)
[»] chr6 (1 HSPs)
chr6 (29-122)||(19381383-19381480)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 9766279 - 9766495
Alignment:
Q  1 accacaggtttcgattccctcttttcaggcttgattttgtatatttgtcgttgatttatattttgataaatagtgatgtttaatttgaaaaaa-tgcaat 99  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  9766279 accacaagtttcgattccctcttttcacgcttgattttg-atatttgtcgttgatttatattttgataaatagtgatgtttaatttgaaaaaaatgcagt 9766377  T
Q  100 tattctaaaataatgttgtgtaattgttacctattagattaaaatgatttcctttaatcaggtggttgtgtaattttaagggtgattctactatctatct 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9766378 tattctaaaataatgttgtgtaattgttacctattagattaaaatgatttcctttaatcaggttgttgtgtaattttaagggtgattctactatctatct 9766477  T
Q  200 atgtggttctacttatag 217  Q
    ||||||||||||||||||    
T  9766478 atgtggttctacttatag 9766495  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 21973690 - 21973609
Alignment:
Q  130 ctattagattaaaatgatttcctttaatcaggtggt--tgtgtaattttaagggtgattctactatctatctatgtggttct 209  Q
    |||||| ||||||||| ||| |||||||||||| ||  |||||||||||||||||||||||||||| |||||||||| ||||    
T  21973690 ctattaaattaaaatgctttactttaatcaggttgtgttgtgtaattttaagggtgattctactatgtatctatgtgattct 21973609  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 21996121 - 21996040
Alignment:
Q  130 ctattagattaaaatgatttcctttaatcaggtggt--tgtgtaattttaagggtgattctactatctatctatgtggttct 209  Q
    |||||| ||||||||| ||| |||||||||||| ||  |||||||||||||||||||||||||||| |||||||||| ||||    
T  21996121 ctattaaattaaaatgctttactttaatcaggttgtgttgtgtaattttaagggtgattctactatgtatctatgtgattct 21996040  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 46125684 - 46125576
Alignment:
Q  29 gcttgattttgtatatttgtcgttgatttatattttgataaa---tagtgatgtttaatttgaa-aaaatgcaattattctaaaataatgttgtgtaatt 124  Q
    |||||||||||||| ||||  |||||||| || | ||||| |   ||||||||||||||||||| |||||||| |||||| ||||  ||||||||||| |    
T  46125684 gcttgattttgtatttttgatgttgatttttaatctgatataaactagtgatgtttaatttgaaaaaaatgcagttattcaaaaacgatgttgtgtaact 46125585  T
Q  125 gttacctat 133  Q
     ||||||||    
T  46125584 attacctat 46125576  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 22156792 - 22156719
Alignment:
Q  138 ttaaaatgatttcctttaatcaggtggt--tgtgtaattttaagggtgattctactatctatctatgtggttct 209  Q
    |||||||| ||| |||||||||| | ||  | |||||||||||||||||||||||||| ||| |||||| ||||    
T  22156792 ttaaaatgttttactttaatcagattgtgttatgtaattttaagggtgattctactatgtatatatgtgattct 22156719  T

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Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 43651231 - 43651015
Alignment:
Q  1 accacaggtttcgattccctcttttcaggcttgattttgtatatttgtcgttgatttatattttgataaatagtgatgtttaatttgaaaaaatgcaatt 100  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  43651231 accacaagtttcgattacctcttttcaagcttgattttgtatatttgacgttgatttttattttgataaatagtgatgtttaatttgaaaaaatgcagtt 43651132  T
Q  101 attctaaaataatgttgtgtaattgttacctattagattaaaatgatttcctttaatcaggtggttgtgtaattttaagggtgattctactatctatcta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43651131 attctaaaataatgttgtgtaattgttacctattagattaaaatgatttcctttaatcaggttgttgtgtaattttaagggtgattctactatctatcta 43651032  T
Q  201 tgtggttctacttatag 217  Q
    |||||||||| ||||||    
T  43651031 tgtggttctatttatag 43651015  T

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Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 21114440 - 21114224
Alignment:
Q  1 accacaggtttcgattccctcttttcaggcttgattttgtatatttgtcgttgatttatattttgataaatagtgatgtttaatttgaaaaaatgcaatt 100  Q
    |||||| ||||||||| |||||||||  ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  21114440 accacaagtttcgattacctcttttcgagcttgattttgtatatttgacgttgatttttattttgataaatagtgatgtttaatttgaaaaaatgcagtt 21114341  T
Q  101 attctaaaataatgttgtgtaattgttacctattagattaaaatgatttcctttaatcaggtggttgtgtaattttaagggtgattctactatctatcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||    
T  21114340 attctaaaataatgttgtgtaattgttacctattagattaaaatgatttcccttaatcaggttgctgtgtaattttaagggtgattctactatctatcta 21114241  T
Q  201 tgtggttctacttatag 217  Q
    |||||||||| ||||||    
T  21114240 tgtggttctatttatag 21114224  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 38929871 - 38929791
Alignment:
Q  137 attaaaatgatttcctttaatcaggtg--gttgtgtaattttaagggtgattctactatctatctatgtggttctacttata 216  Q
    ||||||||||||| ||||||| ||||   |||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  38929871 attaaaatgattttctttaat-aggttttgttgtgtaattttaagggtgattctagtatctatctatgtgattctacttata 38929791  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 3572948 - 3572868
Alignment:
Q  137 attaaaatgatttcctttaatcaggtg--gttgtgtaattttaagggtgattctactatctatctatgtggttctacttata 216  Q
    ||||||||||||| ||||||| ||||   |||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  3572948 attaaaatgattttctttaat-aggttttgttgtgtaattttaagggtgattctactatctatttatgtgattctacttata 3572868  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 9331704 - 9331623
Alignment:
Q  130 ctattagattaaaatgatttcctttaatcaggtggt--tgtgtaattttaagggtgattctactatctatctatgtggttct 209  Q
    |||||| ||||||||| ||| |||||||||||| ||  |||||||||||||||||||||||| ||| |||||||||| ||||    
T  9331704 ctattaaattaaaatgctttactttaatcaggttgtgttgtgtaattttaagggtgattctaatatgtatctatgtgattct 9331623  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 39481446 - 39481365
Alignment:
Q  130 ctattagattaaaatgatttcctttaatcaggtggt--tgtgtaattttaagggtgattctactatctatctatgtggttct 209  Q
    |||||| ||||||||| ||| |||||||||||| ||  |||||||||||||||||||||||||||| |||||||||| ||||    
T  39481446 ctattaaattaaaatgctttactttaatcaggttgtgttgtgtaattttaagggtgattctactatgtatctatgtgattct 39481365  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 51862628 - 51862704
Alignment:
Q  130 ctattagattaaaatgatttcctttaatcaggtggt--tgtgtaattttaagggtgattctactatctatctatgtg 204  Q
    |||||| ||||||||| ||| |||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||    
T  51862628 ctattaaattaaaatgctttactttaatcaggttgtgttgtgtaattttaagggtgattctactatgtatctatgtg 51862704  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 39481542 - 39481456
Alignment:
Q  20 tcttttcaggcttgattttgtatatttgtcgttgatttatattttgata---aatagtgatgtttaatttgaaaaaatgcaattatt 103  Q
    |||||||| | ||||||||||||||||   ||||| || || ||| |||   ||||||||||||||||||||||||||||| |||||    
T  39481542 tcttttcaagtttgattttgtatattttatgttgaattttaatttcatataaaatagtgatgtttaatttgaaaaaatgcagttatt 39481456  T

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Target: scaffold0039 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 82092 - 82189
Alignment:
Q  29 gcttgattttgtatatttgtcgttgatttatattttgata---aatagtgatgtttaatttgaa-aaaatgcaattattctaaaataatgttgtgtaa 122  Q
    |||||||||||||| ||||  |||||||| || |||||||   ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  82092 gcttgattttgtatttttgatgttgatttttaatttgatataaaatagtgatgtttaatttgaacaaaatgcagttattcaaaaacgatgttgtgtaa 82189  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 19381383 - 19381480
Alignment:
Q  29 gcttgattttgtatatttgtcgttgatttatattttgata---aatagtgatgtttaatttgaa-aaaatgcaattattctaaaataatgttgtgtaa 122  Q
    |||||||||||||| ||||  |||||||| || |||||||   ||||||||||||||||||||| |||||||| |||||| ||||  |||||||||||    
T  19381383 gcttgattttgtatttttgatgttgatttttaatttgatataaaatagtgatgtttaatttgaacaaaatgcagttattcaaaaacgatgttgtgtaa 19381480  T

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