View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12781_low_30 (Length: 254)

Name: NF12781_low_30
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12781_low_30
NF12781_low_30
[»] chr3 (33 HSPs)
chr3 (1-239)||(19249175-19249408)
chr3 (1-241)||(12388636-12388868)
chr3 (117-241)||(20725369-20725491)
chr3 (116-241)||(16199572-16199695)
chr3 (114-212)||(6091005-6091103)
chr3 (136-202)||(26417489-26417555)
chr3 (144-215)||(12968643-12968713)
chr3 (112-211)||(14392795-14392894)
chr3 (112-211)||(22803890-22803988)
chr3 (112-210)||(52920676-52920774)
chr3 (1-48)||(16032688-16032734)
chr3 (112-211)||(37467573-37467672)
chr3 (112-210)||(13824303-13824403)
chr3 (112-212)||(31303660-31303760)
chr3 (112-211)||(17238743-17238841)
chr3 (112-211)||(20646426-20646525)
chr3 (112-211)||(29951228-29951326)
chr3 (112-211)||(30000382-30000480)
chr3 (167-216)||(14007903-14007952)
chr3 (164-239)||(14073007-14073084)
chr3 (4-45)||(29951389-29951430)
chr3 (4-45)||(30000543-30000584)
chr3 (143-211)||(16032782-16032850)
chr3 (143-191)||(40800128-40800176)
chr3 (112-211)||(12962890-12962989)
chr3 (178-213)||(19197655-19197690)
chr3 (1-56)||(26417620-26417675)
chr3 (144-202)||(47405249-47405307)
chr3 (113-210)||(28582379-28582476)
chr3 (177-213)||(6713395-6713431)
chr3 (164-212)||(8728814-8728862)
chr3 (164-212)||(9080701-9080749)
chr3 (1-45)||(20725250-20725294)
[»] scaffold0064 (1 HSPs)
scaffold0064 (1-202)||(43654-43866)
[»] chr7 (31 HSPs)
chr7 (1-239)||(13880749-13880984)
chr7 (1-241)||(9098007-9098256)
chr7 (1-102)||(13893895-13893996)
chr7 (112-212)||(13880372-13880472)
chr7 (112-211)||(11319673-11319772)
chr7 (112-212)||(30026159-30026259)
chr7 (112-212)||(44467319-44467418)
chr7 (112-211)||(10882964-10883063)
chr7 (112-211)||(12366541-12366640)
chr7 (145-211)||(13890737-13890803)
chr7 (130-211)||(13031878-13031958)
chr7 (112-212)||(4494742-4494841)
chr7 (147-211)||(13649002-13649066)
chr7 (112-211)||(13018315-13018412)
chr7 (112-211)||(13137715-13137814)
chr7 (113-210)||(33691518-33691615)
chr7 (147-211)||(13303124-13303188)
chr7 (1-56)||(19236986-19237041)
chr7 (147-212)||(28409337-28409402)
chr7 (112-180)||(5000677-5000745)
chr7 (1-45)||(39284518-39284562)
chr7 (1-45)||(41842227-41842270)
chr7 (112-211)||(29935169-29935266)
chr7 (1-39)||(13692503-13692541)
chr7 (166-216)||(16412333-16412383)
chr7 (113-202)||(9709633-9709722)
chr7 (113-190)||(14426783-14426860)
chr7 (143-211)||(39284386-39284455)
chr7 (1-45)||(4494667-4494711)
chr7 (147-211)||(16316367-16316431)
chr7 (112-211)||(19236803-19236902)
[»] scaffold0004 (3 HSPs)
scaffold0004 (112-241)||(243965-244092)
scaffold0004 (114-211)||(220511-220608)
scaffold0004 (1-45)||(220402-220446)
[»] chr2 (35 HSPs)
chr2 (73-236)||(22272346-22272519)
chr2 (113-236)||(44881416-44881539)
chr2 (133-241)||(19115411-19115518)
chr2 (133-241)||(26618813-26618920)
chr2 (138-241)||(18703064-18703166)
chr2 (145-238)||(41121463-41121555)
chr2 (132-212)||(18430673-18430753)
chr2 (114-211)||(24850401-24850497)
chr2 (112-212)||(23235273-23235373)
chr2 (147-211)||(22260706-22260770)
chr2 (112-211)||(22454725-22454824)
chr2 (112-211)||(39037391-39037490)
chr2 (112-211)||(30667255-30667354)
chr2 (112-212)||(9015105-9015205)
chr2 (164-216)||(20569777-20569829)
chr2 (1-45)||(23595467-23595511)
chr2 (147-211)||(25829405-25829469)
chr2 (144-211)||(18376672-18376739)
chr2 (1-56)||(18702896-18702951)
chr2 (112-211)||(19540665-19540763)
chr2 (147-210)||(22317913-22317976)
chr2 (1-34)||(25189556-25189589)
chr2 (1-45)||(18430838-18430882)
chr2 (147-211)||(38631255-38631319)
chr2 (1-37)||(39037547-39037583)
chr2 (1-48)||(18376800-18376847)
chr2 (112-211)||(30621453-30621552)
chr2 (112-211)||(30624074-30624173)
chr2 (178-212)||(24302690-24302724)
chr2 (8-45)||(22454887-22454924)
chr2 (1-45)||(19115241-19115285)
chr2 (1-45)||(21537145-21537189)
chr2 (147-203)||(24377371-24377427)
chr2 (164-212)||(24440499-24440547)
chr2 (1-45)||(41121617-41121661)
[»] chr4 (24 HSPs)
chr4 (114-241)||(11915989-11916114)
chr4 (132-241)||(17540704-17540812)
chr4 (112-239)||(6641947-6642072)
chr4 (136-237)||(17787760-17787859)
chr4 (132-236)||(41114474-41114579)
chr4 (112-211)||(29680305-29680404)
chr4 (112-210)||(56034824-56034922)
chr4 (114-210)||(14604655-14604751)
chr4 (112-212)||(37435267-37435367)
chr4 (113-202)||(10073189-10073278)
chr4 (147-211)||(3395926-3395990)
chr4 (112-211)||(19620839-19620938)
chr4 (1-56)||(41114668-41114723)
chr4 (1-39)||(6641842-6641880)
chr4 (159-216)||(11901528-11901585)
chr4 (8-45)||(40846265-40846302)
chr4 (182-216)||(10250157-10250191)
chr4 (1-39)||(15139386-15139424)
chr4 (113-202)||(13575900-13575989)
chr4 (145-202)||(16853778-16853835)
chr4 (143-211)||(40846379-40846448)
chr4 (113-190)||(54680164-54680241)
chr4 (147-211)||(9141163-9141227)
chr4 (1-45)||(37435443-37435487)
[»] scaffold0081 (1 HSPs)
scaffold0081 (1-241)||(40801-41044)
[»] scaffold0364 (2 HSPs)
scaffold0364 (112-241)||(6262-6389)
scaffold0364 (7-48)||(6177-6218)
[»] chr6 (24 HSPs)
chr6 (112-241)||(10640186-10640313)
chr6 (17-199)||(3680655-3680835)
chr6 (114-211)||(19086424-19086521)
chr6 (112-212)||(13435804-13435904)
chr6 (147-212)||(19689023-19689088)
chr6 (147-211)||(9718150-9718214)
chr6 (143-241)||(26943848-26943945)
chr6 (159-216)||(12348434-12348491)
chr6 (164-237)||(17928121-17928192)
chr6 (147-202)||(12715222-12715277)
chr6 (112-211)||(24117100-24117199)
chr6 (144-202)||(20730507-20730565)
chr6 (159-217)||(23298259-23298316)
chr6 (164-237)||(25592842-25592916)
chr6 (147-211)||(25597769-25597833)
chr6 (1-48)||(19470834-19470881)
chr6 (115-210)||(26971989-26972084)
chr6 (1-39)||(10640365-10640403)
chr6 (1-39)||(15987399-15987437)
chr6 (164-216)||(7812318-7812370)
chr6 (143-211)||(15987497-15987565)
chr6 (114-202)||(21235371-21235459)
chr6 (164-212)||(24718545-24718593)
chr6 (164-216)||(30451310-30451361)
[»] chr5 (19 HSPs)
chr5 (1-241)||(25096568-25096800)
chr5 (1-241)||(25154538-25154770)
chr5 (143-211)||(23881364-23881432)
chr5 (1-51)||(21198931-21198981)
chr5 (1-48)||(9398674-9398721)
chr5 (112-201)||(642488-642577)
chr5 (1-39)||(642646-642684)
chr5 (112-201)||(6499489-6499578)
chr5 (112-211)||(21099475-21099574)
chr5 (147-211)||(21910829-21910893)
chr5 (147-211)||(26784644-26784708)
chr5 (182-240)||(34638795-34638856)
chr5 (114-212)||(7745432-7745530)
chr5 (112-190)||(9398551-9398628)
chr5 (1-39)||(21099643-21099681)
chr5 (172-241)||(22403861-22403931)
chr5 (147-211)||(21072027-21072091)
chr5 (132-160)||(22403951-22403979)
chr5 (1-45)||(23412906-23412950)
[»] chr8 (24 HSPs)
chr8 (132-241)||(22461389-22461497)
chr8 (112-221)||(19956129-19956238)
chr8 (112-241)||(19707767-19707894)
chr8 (112-211)||(19156446-19156545)
chr8 (112-211)||(20382184-20382283)
chr8 (112-212)||(17441610-17441710)
chr8 (112-211)||(602523-602621)
chr8 (132-239)||(18772912-18773017)
chr8 (112-211)||(20255356-20255455)
chr8 (164-246)||(23772683-23772762)
chr8 (1-45)||(17701902-17701946)
chr8 (147-212)||(16189298-16189363)
chr8 (7-211)||(18722419-18722634)
chr8 (112-201)||(17525528-17525616)
chr8 (112-212)||(19943501-19943601)
chr8 (112-212)||(18120911-18121011)
chr8 (7-209)||(18730766-18730979)
chr8 (1-45)||(19707662-19707706)
chr8 (147-210)||(21933200-21933263)
chr8 (132-216)||(26833322-26833416)
chr8 (172-210)||(23263389-23263427)
chr8 (1-45)||(18321109-18321153)
chr8 (147-211)||(29693616-29693680)
chr8 (1-45)||(33083014-33083058)
[»] chr1 (17 HSPs)
chr1 (132-241)||(18896269-18896377)
chr1 (112-212)||(17024691-17024790)
chr1 (112-239)||(21191564-21191688)
chr1 (1-211)||(12613505-12613732)
chr1 (164-246)||(24227666-24227745)
chr1 (114-212)||(22154147-22154245)
chr1 (147-211)||(20954164-20954228)
chr1 (147-211)||(48704506-48704570)
chr1 (164-216)||(20109680-20109732)
chr1 (112-211)||(26701853-26701952)
chr1 (1-39)||(26702007-26702045)
chr1 (1-39)||(48704368-48704406)
chr1 (1-45)||(12284587-12284631)
chr1 (164-212)||(16870279-16870327)
chr1 (9-45)||(17024837-17024873)
chr1 (147-211)||(19717811-19717875)
chr1 (147-211)||(38282889-38282953)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-217)||(159219-159444)
[»] scaffold0040 (2 HSPs)
scaffold0040 (113-241)||(1216-1342)
scaffold0040 (1-56)||(1413-1468)
[»] scaffold0020 (1 HSPs)
scaffold0020 (136-241)||(145160-145263)
[»] scaffold0273 (2 HSPs)
scaffold0273 (136-241)||(8119-8228)
scaffold0273 (1-56)||(5790-5845)
[»] scaffold0861 (1 HSPs)
scaffold0861 (112-210)||(4688-4786)
[»] scaffold0047 (2 HSPs)
scaffold0047 (143-241)||(10171-10268)
scaffold0047 (1-45)||(10067-10111)
[»] scaffold0025 (2 HSPs)
scaffold0025 (143-241)||(74866-74963)
scaffold0025 (1-45)||(74732-74776)
[»] scaffold0116 (1 HSPs)
scaffold0116 (112-212)||(20710-20810)
[»] scaffold0056 (1 HSPs)
scaffold0056 (144-236)||(35898-35990)
[»] scaffold0334 (1 HSPs)
scaffold0334 (112-212)||(10065-10165)
[»] scaffold0916 (1 HSPs)
scaffold0916 (159-241)||(2355-2438)
[»] scaffold0261 (1 HSPs)
scaffold0261 (143-211)||(5694-5762)
[»] scaffold0171 (2 HSPs)
scaffold0171 (112-212)||(27184-27284)
scaffold0171 (1-45)||(27331-27375)
[»] scaffold0084 (1 HSPs)
scaffold0084 (112-211)||(32743-32843)
[»] scaffold0005 (1 HSPs)
scaffold0005 (114-210)||(212627-212723)
[»] scaffold0026 (3 HSPs)
scaffold0026 (1-43)||(151775-151817)
scaffold0026 (147-211)||(8203-8267)
scaffold0026 (147-211)||(60322-60386)
[»] scaffold0359 (1 HSPs)
scaffold0359 (112-212)||(5430-5531)
[»] scaffold0243 (1 HSPs)
scaffold0243 (147-211)||(4750-4814)
[»] scaffold0146 (1 HSPs)
scaffold0146 (112-211)||(15358-15456)
[»] scaffold0485 (1 HSPs)
scaffold0485 (114-212)||(9116-9213)
[»] scaffold0066 (1 HSPs)
scaffold0066 (111-180)||(60656-60724)
[»] scaffold0003 (2 HSPs)
scaffold0003 (113-202)||(89820-89909)
scaffold0003 (166-216)||(1045-1095)
[»] scaffold0161 (1 HSPs)
scaffold0161 (112-208)||(9880-9975)
[»] scaffold0083 (1 HSPs)
scaffold0083 (147-211)||(25732-25796)
[»] scaffold0035 (1 HSPs)
scaffold0035 (112-211)||(19214-19313)
[»] scaffold0009 (1 HSPs)
scaffold0009 (183-241)||(269066-269121)
[»] scaffold0251 (1 HSPs)
scaffold0251 (144-210)||(7993-8059)
[»] scaffold0217 (1 HSPs)
scaffold0217 (144-210)||(19338-19404)
[»] scaffold0007 (1 HSPs)
scaffold0007 (144-210)||(143394-143460)
[»] scaffold1359 (1 HSPs)
scaffold1359 (113-190)||(449-526)
[»] scaffold0324 (2 HSPs)
scaffold0324 (8-45)||(10128-10165)
scaffold0324 (143-211)||(10240-10309)
[»] scaffold0037 (1 HSPs)
scaffold0037 (177-237)||(78773-78830)
[»] scaffold0210 (1 HSPs)
scaffold0210 (1-45)||(1825-1869)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 19249408 - 19249175
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatgaaaaactgtttctagttatgttgcttctgacgaggtgtttctgat 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||| ||||||||||||| |||||| |||||||    
T  19249408 aacaacctttgaagctttaagtctctcatcttctaatgatcttcagctcctgatgaaaaactgcttctagtgatgttgcttctgatgaggtgcttctgat 19249309  T
Q  101 gaacttatttctcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttct 200  Q
    ||  | ||    ||||||||||||| ||||||||||||||| |||||||||||| ||||||| |||| |||||||||||| || ||||||||||||||||    
T  19249308 gacgtcat----cacttcaggagcatttgaacttcagaaccacttttcttcagatgcttcaagcttcattcttgttgattccagtgctctcatttgttct 19249213  T
Q  201 tctagaacctatgcttttaaaaagacactaaatttttgt 239  Q
    || ||||||||| | || ||| |||||||||||||||||    
T  19249212 tccagaacctatac-ttcaaagagacactaaatttttgt 19249175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 12388868 - 12388636
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatgaaaaactgtttctagttatgttgcttctgacgaggtgtttctgat 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||| | ||||||||||| ||||||| ||||||||||||| |||||| || ||||    
T  12388868 aacaacctttgaagctttaagtctctcatcttcttatgatcttcagctcttgatgaaaaactgcttctagtgatgttgcttctgatgaggtgcttatgat 12388769  T
Q  101 gaacttatttctcacttcaggagcacttga--acttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgtt 198  Q
    ||||||  ||||        ||  || | |  ||||||| | | | |||||||||| ||||||| ||||||||||||||||| |||||||||||| ||||    
T  12388768 gaacttgcttct--------gatgacgtcatcacttcaggagcac-tttcttcagatgcttcaagcttccttcttgttgattccattgctctcatatgtt 12388678  T
Q  199 cttctagaacctatgcttttaaaaagacactaaatttttgtct 241  Q
    || | | |||| | || |||||  |||||||||||||||||||    
T  12388677 ctcccaaaacccaagc-tttaagtagacactaaatttttgtct 12388636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 117 - 241
Target Start/End: Original strand, 20725369 - 20725491
Alignment:
Q  117 tcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgctt 216  Q
    |||| ||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||  | |||||| || |    
T  20725369 tcagaagcacttga-ctttagaacctcttttcttcagatgcttcaagcttccttcttgttgatttcattgctctcatttgttcttacataacctaagc-t 20725466  T
Q  217 ttaaaaagacactaaatttttgtct 241  Q
    ||||  |||||||||||||||||||    
T  20725467 ttaaggagacactaaatttttgtct 20725491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 16199695 - 16199572
Alignment:
Q  116 ttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgct 215  Q
    ||||||||||||||| |||||| | | |||||||||||| ||||||| |||| |||||||||||| |||||||||||||||||| || ||||||||| |     
T  16199695 ttcaggagcacttga-cttcaggagcacttttcttcagatgcttcaagcttctttcttgttgattccattgctctcatttgttcctccagaacctatac- 16199598  T
Q  216 tttaaaaagacactaaatttttgtct 241  Q
    |||||||||||||||| |||||||||    
T  16199597 tttaaaaagacactaattttttgtct 16199572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 6091005 - 6091103
Alignment:
Q  114 acttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctat 212  Q
    |||||| |||||||| |||||||| | | ||| |||||||| ||||||| |||| || |||||||||||||||||||| |||||||||| |||||||||    
T  6091005 acttcatgagcactttaacttcaggagcacttctcttcagatgcttcaagcttcatttttgttgatttcattgctctcttttgttcttccagaacctat 6091103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 26417555 - 26417489
Alignment:
Q  136 agaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttc 202  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||    
T  26417555 agaacctattttcttcagatgcttcaagcttccttcttgttgattccattgctctcatttgttcttc 26417489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 12968643 - 12968713
Alignment:
Q  144 ttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgct 215  Q
    |||||||||||| |||||| ||||||||||||||||| |||| | |||||||||||||||||||||||||||    
T  12968643 ttttcttcagac-cttcaagcttccttcttgttgattccattaccctcatttgttcttctagaacctatgct 12968713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 14392894 - 14392795
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||||||| |||||||| | | ||| |||||||| ||||||| |||||||  |||||||| | | |||||| |||||||||| ||||||||    
T  14392894 tcacttcaggagcactttaacttcaggagcacttctcttcagatgcttcaagcttcctttctgttgattccttagctctcttttgttcttccagaaccta 14392795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 22803988 - 22803890
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||| |||||||||| |||||||| | | ||| |||||| | | ||||| ||||||| ||||||||| |||||||||| |||||||||||||||||||    
T  22803988 tcactttaggagcactt-aacttcaggagcacttctcttcaaatgtttcaagcttcctttttgttgattccattgctctcttttgttcttctagaaccta 22803890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 52920676 - 52920774
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    |||||||||||||||||  ||||||| | | ||| |||||||| ||||||| ||||||| ||||||||| | | |||||| |||||||||| |||||||    
T  52920676 tcacttcaggagcacttttacttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattccttagctctcttttgttcttccagaacct 52920774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16032688 - 16032734
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaact 48  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16032688 aacaacctttgaagctttaagtctctcatcttctgatga-cttcaact 16032734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 37467573 - 37467672
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||| |||  ||||||| | | ||| |||||||| ||||||| ||||||| ||||||||| ||||| |||| |||||||||  ||||||||    
T  37467573 tcacttcaggagctctttgacttcaggagcacttatcttcagatgcttcaagcttcctttttgttgattccattgttctcttttgttctttcagaaccta 37467672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 13824303 - 13824403
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcag--acgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacc 209  Q
    |||||||||||||||||  ||||||| | | ||| |||||||   | |||||| ||||||| ||||||||| |||||||||| |||||||||| ||||||    
T  13824303 tcacttcaggagcacttttacttcaggagcacttctcttcaggagcacttcaagcttcctttttgttgattccattgctctcttttgttcttccagaacc 13824402  T
Q  210 t 210  Q
    |    
T  13824403 t 13824403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 31303660 - 31303760
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  ||||||| | | ||| |||||||| |||| || ||||||| |||||||||   |||||||| |||||||||| |||| |||    
T  31303660 tcacttcaggagcactttgacttcaggagcacttctcttcagatgctttaagcttcctttttgttgattcttttgctctcttttgttcttccagaaacta 31303759  T
Q  212 t 212  Q
    |    
T  31303760 t 31303760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 17238841 - 17238743
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||| ||||||||| |||||| | | ||| ||||||||||||| || ||||||| ||||||||| | | |||||| |||||||||  ||||||||    
T  17238841 tcacttcagaagcacttga-cttcaggagcacttctcttcagacgctttaagcttcctttttgttgattccttagctctcttttgttcttaaagaaccta 17238743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 20646426 - 20646525
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||| || |||||  ||||||| | | ||| |||||| |||||| || ||||| | ||||||||| | |||||||| |||||||||||||||||||    
T  20646426 tcacttcatgaacactttgacttcaggagcacttctcttcaaacgctttaagcttccattttgttgattcctttgctctcttttgttcttctagaaccta 20646525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 29951326 - 29951228
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||| ||||||| | | || |||| |||| ||||||| ||||||| ||||||| ||| | |||||| |||||||||| || |||||    
T  29951326 tcacttcaggagcacttg-acttcagtagcactattctacagatgcttcaagcttcctttttgttgacttcttagctctcttttgttcttccaggaccta 29951228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 30000480 - 30000382
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||| ||||||| | | || |||| |||| ||||||| ||||||| ||||||| ||| | |||||| |||||||||| || |||||    
T  30000480 tcacttcaggagcacttg-acttcagtagcactattctacagatgcttcaagcttcctttttgttgacttcttagctctcttttgttcttccaggaccta 30000382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 14007903 - 14007952
Alignment:
Q  167 ccttcttgttgatttcattgctctcatttgttcttctagaacctatgctt 216  Q
    |||| |||| |||| ||| |||||||||||||||||||||||||||||||    
T  14007903 cctttttgtagattccatagctctcatttgttcttctagaacctatgctt 14007952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 14073007 - 14073084
Alignment:
Q  164 cttccttcttgttgatttcattgctctcatttgttcttctagaacctatgctt-ttaaaaagacac-taaatttttgt 239  Q
    ||||||| |||| |||| ||||||||||||||||||||| ||||| |||||||  || |||||||| |||||||||||    
T  14073007 cttcctttttgtagattccattgctctcatttgttcttccagaacatatgcttgatataaagacacttaaatttttgt 14073084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 29951430 - 29951389
Alignment:
Q  4 aacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  29951430 aacctttgaagctttaagtctctcgtcttctgatgaacttca 29951389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 30000584 - 30000543
Alignment:
Q  4 aacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  30000584 aacctttgaagctttaagtctctcgtcttctgatgaacttca 30000543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 16032782 - 16032850
Alignment:
Q  143 cttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||| ||||||| |||| || ||||||||| || ||||||| ||||||||||  |||||||    
T  16032782 cttttcttcagatgcttcaagcttcatttttgttgattccaatgctctcttttgttcttccggaaccta 16032850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 40800128 - 40800176
Alignment:
Q  143 cttttcttcagacgcttcaaacttccttcttgttgatttcattgctctc 191  Q
    ||||||||||||||||| || ||||||| ||||||||||| ||||||||    
T  40800128 cttttcttcagacgctttaagcttcctttttgttgatttctttgctctc 40800176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 12962989 - 12962890
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||| ||||||||  ||||||  | | ||| |||||||||||||||| ||||||| ||||||||| | | |  ||| |||||||||| ||||||||    
T  12962989 tcacttcaagagcactttgacttcaatagcacttctcttcagacgcttcaagcttcctttttgttgattccttagtcctcttttgttcttccagaaccta 12962890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 19197690 - 19197655
Alignment:
Q  178 atttcattgctctcatttgttcttctagaacctatg 213  Q
    ||||||||||||||||||||||||| ||||||||||    
T  19197690 atttcattgctctcatttgttcttccagaacctatg 19197655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26417675 - 26417620
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatga 56  Q
    ||||| ||||||||||| || ||| ||| |||||||||||||||||||||| ||||    
T  26417675 aacaaactttgaagcttcaattctttcagcttctgatgatcttcaactcctgatga 26417620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 47405307 - 47405249
Alignment:
Q  144 ttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttc 202  Q
    |||||||||||||||| || ||||||| ||||||||| | ||||||||  |||||||||    
T  47405307 ttttcttcagacgctttaagcttcctttttgttgattcctttgctctctattgttcttc 47405249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 28582379 - 28582476
Alignment:
Q  113 cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    ||||||||||||||||   |||||| | |  || |||||||||| || || ||||||| ||||||||||| || |||||  ||||||||| |||||||    
T  28582379 cacttcaggagcactttgtcttcaggagcagttctcttcagacgttttaagcttcctttttgttgatttctttactctctattgttcttccagaacct 28582476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 6713395 - 6713431
Alignment:
Q  177 gatttcattgctctcatttgttcttctagaacctatg 213  Q
    |||||||||||||||||||||||||| | ||||||||    
T  6713395 gatttcattgctctcatttgttcttccacaacctatg 6713431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 8728862 - 8728814
Alignment:
Q  164 cttccttcttgttgatttcattgctctcatttgttcttctagaacctat 212  Q
    ||||||| ||||  ||| ||||||||||||||||||||| |||||||||    
T  8728862 cttcctttttgtaaattccattgctctcatttgttcttccagaacctat 8728814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 9080749 - 9080701
Alignment:
Q  164 cttccttcttgttgatttcattgctctcatttgttcttctagaacctat 212  Q
    ||||||| ||||  ||| ||||||||||||||||||||| |||||||||    
T  9080749 cttcctttttgtaaattccattgctctcatttgttcttccagaacctat 9080701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20725250 - 20725294
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    |||| ||||||||||||||| ||||||| ||| ||||||||||||    
T  20725250 aacagcctttgaagctttaattctctcagcttatgatgatcttca 20725294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 43866 - 43654
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatgaaaaactgtttctagttatgttgcttctgacgaggtgtttctgat 100  Q
    |||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |||| || |||||||||||||  ||||| |||||||    
T  43866 aacagcctttgaagttttaagtctctcatcttctgatgatcttcatctcctgatgaaaaactgcttctggtgatgttgcttctgattaggtgcttctgat 43767  T
Q  101 gaacttatttct-----------cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctc 189  Q
    ||||||  ||||           ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||    
T  43766 gaacttgcttctgatgacgtcatcacttcaagagcacttgaacttcagaacctcttttcttcagatgcttcaagcttccttcttgctgattccattgctc 43667  T
Q  190 tcatttgttcttc 202  Q
    | |||||||||||    
T  43666 taatttgttcttc 43654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 13880749 - 13880984
Alignment:
Q  1 aacaacctttgaagctttaagtctctca--tcttctgatgatcttcaactcctaatgaaaaactgtttctagttatgttgcttctgacgaggt-gtttct 97  Q
    |||| ||||||||||||||| ||||||   |||||||||||| |||||||||| ||||||||||| ||||||| ||||||||||||| ||  | | ||||    
T  13880749 aacagcctttgaagctttaattctctctcctcttctgatgatgttcaactcctgatgaaaaactgcttctagtgatgttgcttctgatgaacttgcttct 13880848  T
Q  98 gatgaacttatttctcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgt 197  Q
    |||||  | ||    |||||||||||||||||| ||||| |||| |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||    
T  13880849 gatgacgtcat----cacttcaggagcacttga-cttcataaccacttttcttcagatgcttcaagcttccttcttgttgattccattgctctcatttgt 13880943  T
Q  198 tcttctagaacctatgcttttaaaaagacactaaatttttgt 239  Q
    ||||| ||||||| ||| |||||  |||||||||||||||||    
T  13880944 tcttccagaacctttgc-tttaaggagacactaaatttttgt 13880984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 9098256 - 9098007
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatgaaaaactgtttctagttatgttgcttctgacgaggtgtttctgat 100  Q
    |||| ||||||||||||||| |||||||||||||||||||||||| || || ||||||||||| |||| || ||  ||||| ||| |||||| |||| ||    
T  9098256 aacagcctttgaagctttaattctctcatcttctgatgatcttcagcttctgatgaaaaactgcttctggtgataatgcttttgatgaggtgcttctaat 9098157  T
Q  101 gaacttatttct-----------cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctc 189  Q
    ||||||  ||||           |||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||    
T  9098156 gaacttgcttctgatgacatcatcacttcaggagcacttga-cttcagaacctcttttcttcagatgcttcaagcttccatcttgttgattccattgctc 9098058  T
Q  190 tcatttgttcttctagaacctatgcttttaaaaagacactaaatttttgtct 241  Q
    ||||||||||||| |||| ||| || || ||| ||||| |||||||||||||    
T  9098057 tcatttgttcttccagaatctaagc-ttcaaagagacattaaatttttgtct 9098007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 13893996 - 13893895
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatgaaaaactgtttctagttatgttgcttctgacgaggtgtttctgat 100  Q
    |||||||||||||||||||||| | |||||||||||||||||||| ||||| ||||||||||| |||| || ||||||||||||| |||||| || ||||    
T  13893996 aacaacctttgaagctttaagtatttcatcttctgatgatcttcagctcctgatgaaaaactgcttctggtgatgttgcttctgatgaggtgcttttgat 13893897  T
Q  101 ga 102  Q
    ||    
T  13893896 ga 13893895  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 13880372 - 13880472
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  ||||||||| | ||| ||||||||||||| || ||||||| ||||||||| | |||||||| |||||||||| ||||||||    
T  13880372 tcacttcaggagcactttgacttcagaagcacttctcttcagacgctttaagcttcctttttgttgattcctttgctctcttttgttcttccagaaccta 13880471  T
Q  212 t 212  Q
    |    
T  13880472 t 13880472  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 11319673 - 11319772
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||   |||||| | | ||| ||||||||||||| || ||||||| |||||||||||||||||||| |||||||||| ||||||||    
T  11319673 tcacttcaggagcactttggcttcaggagcacttctcttcagacgctttaagcttcctttttgttgatttcattgctctcttttgttcttccagaaccta 11319772  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 30026159 - 30026259
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  ||||||||| | ||| |||||||| ||||||| ||||||| ||||||||| | |||||||| |||||||||| | ||||||    
T  30026159 tcacttcaggagcacttttacttcagaagcacttctcttcagatgcttcaagcttcctttttgttgattcctttgctctcttttgttcttccataaccta 30026258  T
Q  212 t 212  Q
    |    
T  30026259 t 30026259  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 44467319 - 44467418
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||||||  | |||||| | | ||| |||||||| ||||||||||||||| ||||||||| |||||||||  |||||||||| ||||||||    
T  44467319 tcacttcaggagcactata-cttcaggagcacttctcttcagatgcttcaaacttcctttttgttgattccattgctctattttgttcttccagaaccta 44467417  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 10883063 - 10882964
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  ||||||| | | ||| ||||||||||||| || |||| || ||||||||| | |||||||| |||||||||| ||||||||    
T  10883063 tcacttcaggagcactttgacttcagtagcacttctcttcagacgctttaagcttcatttttgttgattcctttgctctcttttgttcttccagaaccta 10882964  T

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Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 12366640 - 12366541
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||||||| || ||||| | | ||| |||| ||| ||||||| ||||||| ||||||||| |||||||||| ||| |||||| ||||||||    
T  12366640 tcacttcaggagcactttaaattcaggagcacttctctttagatgcttcaagcttcctttttgttgattccattgctctctttttttcttccagaaccta 12366541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 13890803 - 13890737
Alignment:
Q  145 tttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||| | ||||||||    
T  13890803 tttcttcagatgcttcaagcttccttcttgttgattccattgctttcatttgttctcccagaaccta 13890737  T

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Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 13031958 - 13031878
Alignment:
Q  130 aacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||| | | |||||||||||||||||||| |||| | |||||||||| |||||||||| |||||||||| ||||||||    
T  13031958 aacttcaggagcacttttcttcagacgcttcaagcttcatccttgttgattccattgctctc-tttgttcttccagaaccta 13031878  T

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Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 4494742 - 4494841
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||||||  | |||||| | | ||| |||| ||| ||||||| ||||||| |||||||||||||||||||| || ||||||| ||||||||    
T  4494742 tcacttcaggagcactata-cttcaggagcacttctctttagatgcttcaagcttcctttttgttgatttcattgctctctttcgttcttccagaaccta 4494840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 13649002 - 13649066
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||| | |||||||||| ||||||||| | |||||||| |||||||||||||||||||    
T  13649002 tcttcagacgccttaaacttcctttttgttgattcctttgctctcttttgttcttctagaaccta 13649066  T

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Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 13018412 - 13018315
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||||||  |||||||| | | ||||||||||||||||| || |||| | |||||||||| |||||||||| ||||||||||  |||||||    
T  13018412 tcacttcaggagcacta-aacttcaggagcacttttcttcagacgcttgaagcttcatccttgttgattccattgctctc-tttgttcttcccgaaccta 13018315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 13137814 - 13137715
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  ||||||| | | ||| |||||||| ||||||| ||||||| ||||||||| | |  ||||| |||||||||| ||||||||    
T  13137814 tcacttcaggagcactttgacttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattccttacctctcttttgttcttccagaaccta 13137715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 33691615 - 33691518
Alignment:
Q  113 cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    ||||||||||||||||   |||||| | |  || ||||||||||||| |||||||||| ||||||||| | ||||||||  ||||||||| |||||||    
T  33691615 cacttcaggagcactttgtcttcaggagcagttctcttcagacgctttaaacttcctttttgttgattcctttgctctctattgttcttccagaacct 33691518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 13303124 - 13303188
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||| ||||||| || ||||||||||| |||||||| |||||||||| | ||||||    
T  13303124 tcttcagacgctttaaacttcttttttgttgatttctttgctctcttttgttcttccataaccta 13303188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19237041 - 19236986
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatga 56  Q
    |||| ||||||||||||||| |||||||||||||| | ||||||| ||||||||||    
T  19237041 aacagcctttgaagctttaactctctcatcttctggtaatcttcagctcctaatga 19236986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 28409337 - 28409402
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctat 212  Q
    |||||||||||||||||||||||| |||| ||||   |||||||| |||||||||  |||||||||    
T  28409337 tcttcagacgcttcaaacttcctttttgtcgattcatttgctctcttttgttcttacagaacctat 28409402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 5000745 - 5000677
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatt 180  Q
    |||||||||||||||||  ||||||| | | ||| |||||||| | ||||||||||||| |||||||||    
T  5000745 tcacttcaggagcactttgacttcaggatcacttctcttcagatgtttcaaacttcctttttgttgatt 5000677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39284562 - 39284518
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||    
T  39284562 aacagcctttgaagctttgattctctcatcttctgatgatcttca 39284518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41842270 - 41842227
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||    
T  41842270 aacaacctttgaagctt-aagtctctcatcttctgatgaacttca 41842227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 29935266 - 29935169
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||| |||||||||   ||| |||| ||||| || || ||||||| ||||||||| | | |||||| |||||||||| ||||||||    
T  29935266 tcacttcaggagcacttg-acttcagaa-aacttctcttgagacgatttaagcttcctttttgttgattccttagctctcttttgttcttccagaaccta 29935169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 13692503 - 13692541
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatga 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  13692503 aacaacctttgaagctttaagtcttacatcttctgatga 13692541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 16412333 - 16412383
Alignment:
Q  166 tccttcttgttgatttcattgctctcatttgttcttctagaacctatgctt 216  Q
    ||||| |||| |||| ||||||||| ||||||||||| |||||||||||||    
T  16412333 tcctttttgtagattacattgctcttatttgttcttccagaacctatgctt 16412383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 9709722 - 9709633
Alignment:
Q  113 cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttc 202  Q
    ||||||||||||||||   |||||| | |  |||||||||||||||| || ||||||| |||||||||   ||||||||  |||||||||    
T  9709722 cacttcaggagcactttgtcttcaggagcagttttcttcagacgctttaagcttcctttttgttgattcatttgctctctattgttcttc 9709633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 14426783 - 14426860
Alignment:
Q  113 cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctct 190  Q
    ||||||||||||||||   |||||| | |  |||||||||||||||| || ||||||| ||||||||| | |||||||    
T  14426783 cacttcaggagcactttgtcttcaggagcagttttcttcagacgctttaagcttcctttttgttgattcctttgctct 14426860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 39284455 - 39284386
Alignment:
Q  143 cttttcttcagacgcttcaaacttccttcttgttgatttcattgctc-tcatttgttcttctagaaccta 211  Q
    ||||||||||||| |||||| ||||||| ||||||||| |||  ||| | ||||||||||| ||||||||    
T  39284455 cttttcttcagacacttcaagcttcctttttgttgattccatatctcttaatttgttcttccagaaccta 39284386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4494667 - 4494711
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    ||||||||||||||||||||||||  ||||| ||||||| |||||    
T  4494667 aacaacctttgaagctttaagtcttgcatctcctgatgaacttca 4494711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 16316431 - 16316367
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||| ||||||||||| ||||||| ||||||||| | | |||||| |||||||||  ||||||||    
T  16316431 tctttagacgcttcaagcttcctttttgttgattccttagctctcttttgttctttcagaaccta 16316367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 19236902 - 19236803
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctca-tttgttcttctagaacct 210  Q
    ||||||||| ||||||||| ||||| || | || ||||||||| ||||||  ||||||| ||||||||| |||  |||| | |||||||||| |||||||    
T  19236902 tcacttcagaagcacttga-cttcaaaatcactattcttcagatgcttcaggcttcctttttgttgattccataactcttaatttgttcttccagaacct 19236804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 112 - 241
Target Start/End: Complemental strand, 244092 - 243965
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  244092 tcacttcatgagcacttga-cttcagaacctcttttcttcagatgcttcaagcttccttcttgttgattccattgctctaatttgttcttccagaaccta 243994  T
Q  212 tgcttttaaaaagacactaaatttttgtct 241  Q
    ||| || ||| |||||||||||||||||||    
T  243993 tgc-ttcaaagagacactaaatttttgtct 243965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 220511 - 220608
Alignment:
Q  114 acttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctc-atttgttcttctagaaccta 211  Q
    ||||||||||||||||| |||||| | | ||||||||||||||||||||  |||||| ||||||||| ||| |||||| ||||||||||  ||||||||    
T  220511 acttcaggagcacttga-cttcaggagcacttttcttcagacgcttcaaggttcctttttgttgattccatagctctcaatttgttctttcagaaccta 220608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 220402 - 220446
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    |||| |||||||||||||||||||||||||| ||||||| |||||    
T  220402 aacagcctttgaagctttaagtctctcatctcctgatgaacttca 220446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 22272346 - 22272519
Alignment:
Q  73 atgttgcttctgacgaggtgtttctgatgaacttatttct-----------cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttca 161  Q
    ||||||||||||| |||||||||||||||||||| |||||           ||||||||||| | |||| |||||||| |||||||||||||  ||||||    
T  22272346 atgttgcttctgatgaggtgtttctgatgaacttgtttctaatgacgtcatcacttcaggagtatttga-cttcagaaactcttttcttcagttgcttca 22272444  T
Q  162 aacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaaatttt 236  Q
    | ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||    
T  22272445 accttccttcttgttgattccattgctctcatttgttcttccagaacctatgctttaaaagagacactaaatttt 22272519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 44881416 - 44881539
Alignment:
Q  113 cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctat 212  Q
    |||||||||||||||||| ||||| || |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44881416 cacttcaggagcacttga-cttcaaaatctcttttcttcagatgcttcaagcttccttcttgttgatttcattgctctcatttgttcttccagaacctat 44881514  T
Q  213 gcttttaaaa-agacactaaatttt 236  Q
    || || |||| ||||||||||||||    
T  44881515 gccttaaaaagagacactaaatttt 44881539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 19115411 - 19115518
Alignment:
Q  133 ttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaaa 232  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||    
T  19115411 ttcagaacctcttttcttcagacgcttcaagcttccttcctgttgattccattgctctcatttgttcttccagaacctatg-gtttaaagagacactaaa 19115509  T
Q  233 tttttgtct 241  Q
    ||| |||||    
T  19115510 tttgtgtct 19115518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 26618920 - 26618813
Alignment:
Q  133 ttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaaa 232  Q
    |||| |||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| || | ||||||||| ||| ||||||||||    
T  26618920 ttcataacctcttttcttcagactcttcaagcttccttcttgttgattccattgctctcatttgttcttccag-atctatgctttaaaagagacactaaa 26618822  T
Q  233 tttttgtct 241  Q
    |||||||||    
T  26618821 tttttgtct 26618813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 18703064 - 18703166
Alignment:
Q  138 aacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaaattttt 237  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | |||||||| |||||||||||| |||||| ||||||||||| |||    
T  18703064 aacctcttttcttcagacgcttcaagcttccttcttgttgattccattgctctaacttgttcttgtagaacctatgc-tttaaagagacactaaatgttt 18703162  T
Q  238 gtct 241  Q
    ||||    
T  18703163 gtct 18703166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 41121555 - 41121463
Alignment:
Q  145 tttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaaatttttg 238  Q
    |||||||||| ||||||| ||||||||||||| ||| ||||||| ||||||||||||| ||||| ||| | |||||||||||||||||||||||    
T  41121555 tttcttcagatgcttcaagcttccttcttgtttattccattgctttcatttgttcttcgagaacttatac-tttaaaaagacactaaatttttg 41121463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 18430753 - 18430673
Alignment:
Q  132 cttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctat 212  Q
    |||||| ||||||| |||||| ||||||||| |||||||||||||||||  |||||||||||||||||||| |||||||||    
T  18430753 cttcaggacctcttgtcttcatacgcttcaagcttccttcttgttgattatattgctctcatttgttcttccagaacctat 18430673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 24850497 - 24850401
Alignment:
Q  114 acttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||||||| |||||| | | |||||||||||| ||||||| ||||||| ||||||||| | | |||||| |||||||||| ||||||||    
T  24850497 acttcaggagcacttga-cttcaggagcacttttcttcagatgcttcaagcttcctttttgttgattccttagctctcttttgttcttcgagaaccta 24850401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 23235273 - 23235373
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  ||||||  | | ||| ||||||||||||| || ||| ||| |||||||||  ||||||||| |||||||||||||||||||    
T  23235273 tcacttcaggagcactttgacttcaagagcacttctcttcagacgctttaagcttactttttgttgattcaattgctctcttttgttcttctagaaccta 23235372  T
Q  212 t 212  Q
    |    
T  23235373 t 23235373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 22260706 - 22260770
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||| | |||||||||| ||||||||| | |||||||| |||||||||||||||||||    
T  22260706 tcttcagacgccttaaacttcctttttgttgattcctttgctctcttttgttcttctagaaccta 22260770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 22454824 - 22454725
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctc-tcatttgttcttctagaacct 210  Q
    |||||||| ||||||| || |||||| | | |||||||||||| ||||||| ||||||| ||||||||||||| |||| | ||||||||||| |||||||    
T  22454824 tcacttcaagagcactaga-cttcaggagcacttttcttcagatgcttcaagcttcctttttgttgatttcatagctcttaatttgttcttccagaacct 22454726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 39037490 - 39037391
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctca-tttgttcttctagaacct 210  Q
    ||||||||| ||||||| |||||||| | | ||| |||||||| ||||||| ||||||| ||||||||| ||| ||||||| |||||||||| |||||||    
T  39037490 tcacttcagaagcactt-aacttcagtagcacttctcttcagatgcttcaagcttcctttttgttgattccatagctctcaatttgttcttccagaacct 39037392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 30667255 - 30667354
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  ||||| | | | ||| |||||||| ||||||| ||||||| |||||||||  |||||||||  ||||||||| ||||||||    
T  30667255 tcacttcaggagcactttgacttcgggagcacttctcttcagatgcttcaagcttcctttttgttgattcaattgctctctattgttcttccagaaccta 30667354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 9015205 - 9015105
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||| |||||  ||||||  | | ||| |||||||| ||||||| ||||| | ||||||||| | |||||||| |||||||||| ||||||||    
T  9015205 tcacttcaggatcacttttacttcaagagcacttctcttcagatgcttcaagcttccattttgttgattcctttgctctcttttgttcttccagaaccta 9015106  T
Q  212 t 212  Q
    |    
T  9015105 t 9015105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 20569777 - 20569829
Alignment:
Q  164 cttccttcttgttgatttcattgctctcatttgttcttctagaacctatgctt 216  Q
    ||||||| |||| |||| ||||||||||||||||||||| |||||||||||||    
T  20569777 cttcctttttgtagattccattgctctcatttgttcttccagaacctatgctt 20569829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23595511 - 23595467
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  23595511 aacaacctttgaagctttaattctttcatcttctgatgatcttca 23595467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 25829405 - 25829469
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||| || ||||||| ||||||||| | |||||||| |||||||||| ||||||||    
T  25829405 tcttcagacgctttaagcttcctttttgttgattcctttgctctcttttgttcttccagaaccta 25829469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 18376739 - 18376672
Alignment:
Q  144 ttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||| ||||||| ||||||| ||||||||| | | |||||| |||||||||| ||||||||    
T  18376739 ttttcttcagatgcttcaagcttcctttttgttgattccttagctctcttttgttcttccagaaccta 18376672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 18702896 - 18702951
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatga 56  Q
    ||||||||||||||||| || ||| ||| |||||||||||||||||||||| ||||    
T  18702896 aacaacctttgaagcttcaattctttcagcttctgatgatcttcaactcctgatga 18702951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 19540665 - 19540763
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||| || |||||| | | ||||||||||||||||| || ||| ||| ||||||||| | | |||||| |||||||||| | ||||||    
T  19540665 tcacttcaggagcactaga-cttcaggaacacttttcttcagacgctttaagctttctttttgttgattccttagctctcttttgttcttccaaaaccta 19540763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 22317913 - 22317976
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    ||||||||||||| || ||||||| ||||||||| | ||||||||  |||||||||||||||||    
T  22317913 tcttcagacgctttaagcttcctttttgttgattcctttgctctctattgttcttctagaacct 22317976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 25189556 - 25189589
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttct 34  Q
    ||||||||||||||||||||||||||||||||||    
T  25189556 aacaacctttgaagctttaagtctctcatcttct 25189589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18430882 - 18430838
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||||    
T  18430882 aacaacctttgaagctttaattctttcagcttctgatgatcttca 18430838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 38631255 - 38631319
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||| ||||||| |||| || ||||||||||| |||||||| |||||| ||| ||||||||    
T  38631255 tcttcagatgcttcaagcttcatttttgttgatttctttgctctcttttgtttttccagaaccta 38631319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39037583 - 39037547
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgat 37  Q
    |||||||||||||| ||||||||||||||||||||||    
T  39037583 aacaacctttgaagttttaagtctctcatcttctgat 39037547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18376847 - 18376800
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaact 48  Q
    |||| ||||||||||||||||||||||||||||  |||| ||||||||    
T  18376847 aacagcctttgaagctttaagtctctcatcttcaaatgaacttcaact 18376800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 30621453 - 30621552
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  |||||   | | ||| |||| ||| |||| || ||||||| ||||||||| ||||||||||  ||||||||| ||||||||    
T  30621453 tcacttcaggagcactttgacttcgagagcacttctctttagatgcttgaagcttcctttttgttgattccattgctctctattgttcttccagaaccta 30621552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 30624074 - 30624173
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  |||||   | | ||| |||| ||| |||| || ||||||| ||||||||| ||||||||||  ||||||||| ||||||||    
T  30624074 tcacttcaggagcactttgacttcgagagcacttctctttagatgcttgaagcttcctttttgttgattccattgctctctattgttcttccagaaccta 30624173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 24302724 - 24302690
Alignment:
Q  178 atttcattgctctcatttgttcttctagaacctat 212  Q
    ||||||||||||||||||||||||| |||||||||    
T  24302724 atttcattgctctcatttgttcttccagaacctat 24302690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 22454924 - 22454887
Alignment:
Q  8 tttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    ||||||||||||||||||||||||||||| || |||||    
T  22454924 tttgaagctttaagtctctcatcttctgaagaacttca 22454887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19115241 - 19115285
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    ||||||||||||||||| || ||| ||| ||||||||||||||||    
T  19115241 aacaacctttgaagcttcaattctttcagcttctgatgatcttca 19115285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21537189 - 21537145
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    ||||||||||||||||||||||||  ||||| ||||||| |||||    
T  21537189 aacaacctttgaagctttaagtcttgcatctcctgatgaacttca 21537145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 24377371 - 24377427
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttct 203  Q
    |||||||| ||||| | ||||||| |||||||||  ||||||||| |||||||||||    
T  24377371 tcttcagatgcttctagcttcctttttgttgattctattgctctcttttgttcttct 24377427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 24440547 - 24440499
Alignment:
Q  164 cttccttcttgttgatttcattgctctcatttgttcttctagaacctat 212  Q
    ||||||| ||||  ||| |||||||||| ||||||||||||||||||||    
T  24440547 cttcctttttgtaaattccattgctctcgtttgttcttctagaacctat 24440499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41121661 - 41121617
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    |||| ||||||||||||||| |||| || ||||||||||||||||    
T  41121661 aacagcctttgaagctttaattctcacagcttctgatgatcttca 41121617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 11915989 - 11916114
Alignment:
Q  114 acttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatg 213  Q
    ||||||||||||||| | |||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  11915989 acttcaggagcactt-atcttcagaacctcttttcttcggatgcttcaagcttccttcttgttgatttcattgctctcattttttctttcagaacctatg 11916087  T
Q  214 cttttaaaaagacactaaatttttgtct 241  Q
    | |||||| |||||||||||||||||||    
T  11916088 c-tttaaagagacactaaatttttgtct 11916114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 17540704 - 17540812
Alignment:
Q  132 cttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaa 231  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||| || ||| |||||||||    
T  17540704 cttcagaacctcttttcttcagatgcttcaagcttccttcttgttgattccattgctctcatttgttcttccagaacctatgc-ttgaaagagacactaa 17540802  T
Q  232 atttttgtct 241  Q
    ||||||||||    
T  17540803 atttttgtct 17540812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 6641947 - 6642072
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||||||||| |||||||| | | |||||||||| ||||||| ||||||||||||||| | ||||||||||||||||||||| ||||||||    
T  6641947 tcacttcaggagcacttga-cttcagaagcacatttcttcagatgcttcaagcttccttcttgttgactccattgctctcatttgttcttccagaaccta 6642045  T
Q  212 tgcttttaaaaagacactaaatttttgt 239  Q
    | | |||||| ||||| |||||||||||    
T  6642046 tac-tttaaatagacattaaatttttgt 6642072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 17787859 - 17787760
Alignment:
Q  136 agaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaaattt 235  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||| |||||||||||||    
T  17787859 agaacctcttttcttcagatgcttcaagcttccttcttgttgatttcattgctctcatttgttcttc-agaacatgtgc-tttaaagagacactaaattt 17787762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 41114579 - 41114474
Alignment:
Q  132 cttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaa-agacacta 230  Q
    ||||||||||||||||||||| | ||||||| ||||||||| ||||||| ||||||||||||||||||||| |||||||| ||||| |||| ||||||||    
T  41114579 cttcagaacctcttttcttcatatgcttcaagcttccttctcgttgattccattgctctcatttgttcttcgagaacctaagctttaaaaagagacacta 41114480  T
Q  231 aatttt 236  Q
    ||||||    
T  41114479 aatttt 41114474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 29680404 - 29680305
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  ||||||| | | ||| ||||||||  |||||| ||||||| ||||||||| | |||||||| |||||||||||||||||||    
T  29680404 tcacttcaggagcactttgacttcaggaacacttctcttcagatacttcaagcttcctttttgttgattcctttgctctcttttgttcttctagaaccta 29680305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 56034824 - 56034922
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    ||||||||| |||||||  ||||||| | | |||||||||||||||||||| ||| ||| |||||||||   |||||||| |||||||||| |||||||    
T  56034824 tcacttcagaagcacttttacttcaggatcacttttcttcagacgcttcaagctttctttttgttgattcatttgctctcttttgttcttccagaacct 56034922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 14604751 - 14604655
Alignment:
Q  114 acttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    |||||||||||||||  ||||||| | | ||| |||||||||| ||||| ||||||| ||||||||| | | |||||| |||||||||| |||||||    
T  14604751 acttcaggagcactttgacttcaggagcacttctcttcagacgtttcaagcttcctttttgttgattccttagctctcttttgttcttccagaacct 14604655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 37435367 - 37435267
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||||||   ||||||| | | ||| |||||||| ||||||| ||||||| |||||||||   |||||||| |||||||||| ||||||||    
T  37435367 tcacttcaggagcactattacttcaggagcacttctcttcagatgcttcaagcttcctttttgttgattcatttgctctcttttgttcttccagaaccta 37435268  T
Q  212 t 212  Q
    |    
T  37435267 t 37435267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 10073189 - 10073278
Alignment:
Q  113 cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttc 202  Q
    ||||||||||||||||   |||||| | | ||||||||||||||||| || ||||||| ||||||||| | ||||||||  |||||||||    
T  10073189 cacttcaggagcactttgtcttcaggagcacttttcttcagacgctttaagcttcctttttgttgattcctttgctctctattgttcttc 10073278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 3395926 - 3395990
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||| || ||||||| ||||||||| | |||||||| |||||||||| ||||||||    
T  3395926 tcttcagacgctttaagcttcctttttgttgattcctttgctctcttttgttcttccagaaccta 3395990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 19620938 - 19620839
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||| |||||  ||||||| | | | | |||||||| |||| || ||||||| ||||||||| | |||||||| |||||||||| ||||||||    
T  19620938 tcacttcaggatcactttgacttcaggagcacgtctcttcagatgctttaagcttcctttttgttgattcctttgctctcttttgttcttccagaaccta 19620839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 41114723 - 41114668
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatga 56  Q
    ||||||||||||||||| || ||||||| |||||||||||||||| ||||| ||||    
T  41114723 aacaacctttgaagcttcaattctctcagcttctgatgatcttcagctcctgatga 41114668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6641842 - 6641880
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatga 39  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  6641842 aacaacctttgaagctttaaatctctcatcttctgatga 6641880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 11901528 - 11901585
Alignment:
Q  159 tcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgctt 216  Q
    |||| ||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||||    
T  11901528 tcaagcttcctttttgttaattccattgttctcatttgttcttccagaacctatgctt 11901585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 40846265 - 40846302
Alignment:
Q  8 tttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    |||||||||||||||||||||||||||||||| |||||    
T  40846265 tttgaagctttaagtctctcatcttctgatgaacttca 40846302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 10250157 - 10250191
Alignment:
Q  182 cattgctctcatttgttcttctagaacctatgctt 216  Q
    |||||||||||||||||||||||||||| ||||||    
T  10250157 cattgctctcatttgttcttctagaacccatgctt 10250191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 15139386 - 15139424
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatga 39  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  15139386 aacaacctttgaatctttaagtctatcatcttctgatga 15139424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 13575989 - 13575900
Alignment:
Q  113 cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttc 202  Q
    ||||||||||||||||   |||||| | |  |||||||||||||||| || ||||||| |||||||||   ||||||||  |||||||||    
T  13575989 cacttcaggagcactttgtcttcaggagcagttttcttcagacgctttaagcttcctttttgttgattcatttgctctctattgttcttc 13575900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 16853778 - 16853835
Alignment:
Q  145 tttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttc 202  Q
    ||||||||||||||| || ||||||| ||||||||| | ||||||| | |||||||||    
T  16853778 tttcttcagacgctttaagcttcctttttgttgattcctttgctcttaattgttcttc 16853835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 40846379 - 40846448
Alignment:
Q  143 cttttcttcagacgcttcaaacttccttcttgttgatttcattgctctc-atttgttcttctagaaccta 211  Q
    |||||||||||| ||||||| ||||||| ||||||||| |||  ||||| ||||||||||  ||||||||    
T  40846379 cttttcttcagatgcttcaagcttcctttttgttgattccataactctcaatttgttctttcagaaccta 40846448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 54680164 - 54680241
Alignment:
Q  113 cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctct 190  Q
    ||||||||||||||||   |||||| | |  |||||||||||||||| || ||||||| ||||||||| | |||||||    
T  54680164 cacttcaggagcactttgtcttcaggagcaattttcttcagacgctttaagcttcctttttgttgattcctttgctct 54680241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 9141163 - 9141227
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||| | || ||||||| ||||||||| | |||||||| |||||||||| | ||||||    
T  9141163 tcttcagacgccttaagcttcctttttgttgattcctttgctctcttttgttcttccataaccta 9141227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37435487 - 37435443
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    ||||||||||||||||||||||||  ||||| ||||||| |||||    
T  37435487 aacaacctttgaagctttaagtcttgcatctcctgatgaacttca 37435443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 40801 - 41044
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatgaaaaactgtttctagttatgttgcttctgacgaggtgtttctgat 100  Q
    |||| |||||||||||| || ||||||||||||||||||||||||       ||| ||||||| |||| || ||||||||||| | |||||| |||||||    
T  40801 aacagcctttgaagcttcaattctctcatcttctgatgatcttcag------atggaaaactgcttctggtgatgttgcttctaatgaggtgcttctgat 40894  T
Q  101 gaacttatttct-----------cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctc 189  Q
    || |||| ||||           |||||||||||| |||||  ||||||||| |||||||||||| | ||||||||||||| ||||||||| ||||||||    
T  40895 gatcttacttctgatgacatcaccacttcaggagcccttgag-ttcagaaccacttttcttcagatggttcaaacttcctttttgttgattccattgctc 40993  T
Q  190 tcatttgttcttctagaacctatgcttttaaaaagacactaaatttttgtct 241  Q
    ||||||||||||| |||||||| || |||||| ||||||| |||||||||||    
T  40994 tcatttgttcttccagaacctaagc-tttaaagagacacttaatttttgtct 41044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 112 - 241
Target Start/End: Original strand, 6262 - 6389
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||| ||||||| |||||| | | |||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6262 tcacttcaggaacacttga-cttcaggagcacttttcttcagatgcttcaagcttccttcttgttgattccattgctctcatttgttcttctagaaccta 6360  T
Q  212 tgcttttaaaaagacactaaatttttgtct 241  Q
    | | |||||| |||||||||||||||||||    
T  6361 tac-tttaaatagacactaaatttttgtct 6389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 6177 - 6218
Alignment:
Q  7 ctttgaagctttaagtctctcatcttctgatgatcttcaact 48  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  6177 ctttgaagctttaaatctctcatcttctgatgaacttcaact 6218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 112 - 241
Target Start/End: Complemental strand, 10640313 - 10640186
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||| | || |||    
T  10640313 tcacttcaggagcacttga-cttcagaacctcttttcttcatatgcttcaagcttccttcttgttgatttcattgctctcatttgttcttccaaaatcta 10640215  T
Q  212 tgcttttaaaaagacactaaatttttgtct 241  Q
    | | || ||| |||||||||||||||||||    
T  10640214 tac-ttcaaagagacactaaatttttgtct 10640186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 3680655 - 3680835
Alignment:
Q  17 ttaagtctctcatcttctgatgatcttcaactcctaatgaaaaactgtttctagttatgttgcttctgacgaggtgtttctgatgaacttatttc-tcac 115  Q
    |||| ||||||| ||||||||||||||||  || | |||||||| || |||| || ||||||||||| | |||||| |||||||||  | |  || ||||    
T  3680655 ttaattctctcagcttctgatgatcttcagttcttgatgaaaaattgcttctggtgatgttgcttctaatgaggtgattctgatga--tgacgtcatcac 3680752  T
Q  116 ttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttc 199  Q
    ||||| ||||||||| |||||||||| |||||||||||| |||| || |||||||||||| |||||| |||||||| |||||||    
T  3680753 ttcagcagcacttga-cttcagaaccacttttcttcagatgctttaagcttccttcttgtagatttctttgctctcttttgttc 3680835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 19086424 - 19086521
Alignment:
Q  114 acttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||  ||||||| | | ||| |||||||||||||||| ||||||| ||||||||| | | |||||| |||||||||| ||||||||    
T  19086424 acttcaggagcactttgacttcaggagcacttctcttcagacgcttcaagcttcctttttgttgattccttagctctcttttgttcttccagaaccta 19086521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 13435804 - 13435904
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  |||| || | | ||| |||||||| ||||||| ||||||| ||||||||| |||||||||| |||||||||  ||||||||    
T  13435804 tcacttcaggagcacttttactttaggagcacttctcttcagatgcttcaagcttcctttttgttgattccattgctctcttttgttctttcagaaccta 13435903  T
Q  212 t 212  Q
    |    
T  13435904 t 13435904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 19689023 - 19689088
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctat 212  Q
    |||||||||||||||||||||||| |||||||||   |||||||| |||||||||| |||||||||    
T  19689023 tcttcagacgcttcaaacttcctttttgttgattcatttgctctcttttgttcttccagaacctat 19689088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 9718150 - 9718214
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||| || ||||||| ||||||||| | |||||||| |||||||||||||||||||    
T  9718150 tcttcagacgctttaagcttcctttttgttgattcctttgctctcttttgttcttctagaaccta 9718214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 26943848 - 26943945
Alignment:
Q  143 cttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaaatttttgtct 241  Q
    |||| ||||||| ||||||| |  |||||||||||||  |||||||||||||||||||| |||||| ||| | || ||| ||||||| |||||||||||    
T  26943848 ctttccttcagatgcttcaagcaaccttcttgttgatcccattgctctcatttgttcttttagaacatatac-ttcaaagagacactcaatttttgtct 26943945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 12348434 - 12348491
Alignment:
Q  159 tcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgctt 216  Q
    |||| ||||||| || | |||||||||||||||||||||||||| |||||||||||||    
T  12348434 tcaagcttcctttttctagatttcattgctctcatttgttcttcgagaacctatgctt 12348491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 17928121 - 17928192
Alignment:
Q  164 cttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaaattttt 237  Q
    ||||||| ||||||| |  |||||||||||||||||||| |||||||||||||||  |||||||||||||||||    
T  17928121 cttcctttttgttgaatctattgctctcatttgttcttc-agaacctatgctttt-taaagacactaaattttt 17928192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 12715277 - 12715222
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttc 202  Q
    |||||||| ||||||| ||||||| ||||||||||| |||||||| ||||||||||    
T  12715277 tcttcagatgcttcaagcttcctttttgttgatttctttgctctcttttgttcttc 12715222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 24117100 - 24117199
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  ||||||| | | ||| |||||||| |||| || ||||||| ||||||||| | | |||||| |||||||||| | ||||||    
T  24117100 tcacttcaggagcactttgacttcaggagcacttctcttcagatgctttaagcttcctttttgttgattccttagctctcttttgttcttccataaccta 24117199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 20730565 - 20730507
Alignment:
Q  144 ttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttc 202  Q
    |||||||||||||||| || ||||||| ||||||||||| ||||||||  |||||||||    
T  20730565 ttttcttcagacgcttaaagcttcctttttgttgatttctttgctctctattgttcttc 20730507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 23298259 - 23298316
Alignment:
Q  159 tcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttt 217  Q
    |||| ||||||| |||| |||| ||||||||||||||||||||| ||||||||||||||    
T  23298259 tcaagcttcctttttgtagattccattgctctcatttgttcttc-agaacctatgcttt 23298316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 25592842 - 25592916
Alignment:
Q  164 cttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttt-taaaaagacactaaattttt 237  Q
    ||||||| |||| |||| ||||||||||||||||||||| ||||| |||||||| |  ||||||||| |||||||    
T  25592842 cttcctttttgtagattccattgctctcatttgttcttccagaacttatgctttattcaaagacacttaattttt 25592916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 25597769 - 25597833
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||| ||||  | ||||||| ||||||||| |||||||||| ||| |||||||||||||||    
T  25597769 tcttcagatgcttttagcttcctttttgttgattccattgctctcttttattcttctagaaccta 25597833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19470834 - 19470881
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaact 48  Q
    ||||||||||||||||| |  ||||||||||| |||||||||||||||    
T  19470834 aacaacctttgaagcttcagttctctcatcttttgatgatcttcaact 19470881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 26972084 - 26971989
Alignment:
Q  115 cttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    |||||| |||||||  ||||||||| |  || ||||||||||||| ||  |||||| ||||||||| | ||||||||  ||||||||| |||||||    
T  26972084 cttcagtagcactttgacttcagaagcagttctcttcagacgctttaagattcctttttgttgattcctttgctctccattgttcttccagaacct 26971989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10640403 - 10640365
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatga 39  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  10640403 aacaacctttgaagctttaattctctcagcttctgatga 10640365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 15987399 - 15987437
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatga 39  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  15987399 aacatcctttgaagctctaagtctctcatcttctgatga 15987437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 7812318 - 7812370
Alignment:
Q  164 cttccttcttgttgatttcattgctctcatttgttcttctagaacctatgctt 216  Q
    ||||||| |||| ||||  |||||| ||||||||||||| |||||||||||||    
T  7812318 cttcctttttgtagattcaattgctttcatttgttcttccagaacctatgctt 7812370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 15987497 - 15987565
Alignment:
Q  143 cttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||| ||||||| ||||||| ||||||||| | | |||||| |||||| ||  ||||||||    
T  15987497 cttttcttcagatgcttcaagcttcctttttgttgattccttagctctcttttgttttttcagaaccta 15987565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 21235371 - 21235459
Alignment:
Q  114 acttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttc 202  Q
    |||||||||||||||   |||||| | |  |||||||||||||||| || ||||||| |||| |||| | ||||||||  |||||||||    
T  21235371 acttcaggagcactttgtcttcaggagcagttttcttcagacgctttaagcttcctttttgtagattcctttgctctctattgttcttc 21235459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 24718593 - 24718545
Alignment:
Q  164 cttccttcttgttgatttcattgctctcatttgttcttctagaacctat 212  Q
    ||||||| ||||  |||| |||||||||||||||||||| |||||||||    
T  24718593 cttcctttttgtaaattttattgctctcatttgttcttccagaacctat 24718545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 30451361 - 30451310
Alignment:
Q  164 cttccttcttgttgatttcattgctctcatttgttcttctagaacctatgctt 216  Q
    ||||||| || | |||| ||||||||||||||||||||| |||||||||||||    
T  30451361 cttcctttttatagattccattgctctcatttgttcttc-agaacctatgctt 30451310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 25096800 - 25096568
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatgaaaaactgtttctagttatgttgcttctgacgaggtgtttctgat 100  Q
    |||||||||||||||||||||||||| ||||| |||||||||||| ||||  ||||||||||| || | || ||||||||||||||| |||| |||||||    
T  25096800 aacaacctttgaagctttaagtctcttatcttatgatgatcttcagctccggatgaaaaactgcttttggtgatgttgcttctgacggggtgcttctgat 25096701  T
Q  101 gaacttatttctcacttcaggagcacttga--acttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgtt 198  Q
    ||||||  ||||        ||  || | |  ||||||| | | | |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25096700 gaacttgcttct--------gatgacgtcatcacttcaggagcac-tttcttcagatgcttcaaacttccttcttgttgatttcattgctctcatttgtt 25096610  T
Q  199 cttctagaacctatgcttttaaaaagacactaaatttttgtct 241  Q
    ||   |||||||| || |||||  | |||||||||||||||||    
T  25096609 ctcacagaacctacgc-tttaagtaaacactaaatttttgtct 25096568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 25154770 - 25154538
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatgaaaaactgtttctagttatgttgcttctgacgaggtgtttctgat 100  Q
    |||||||||||||||||||||||||| ||||| |||||||||||| ||||  ||||||||||| || | || ||||||||||||||| |||| |||||||    
T  25154770 aacaacctttgaagctttaagtctcttatcttatgatgatcttcagctccggatgaaaaactgcttttggtgatgttgcttctgacggggtgcttctgat 25154671  T
Q  101 gaacttatttctcacttcaggagcacttga--acttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgtt 198  Q
    ||||||  ||||        ||  || | |  ||||||| | | | |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25154670 gaacttgcttct--------gatgacgtcatcacttcaggagcac-tttcttcagatgcttcaaacttccttcttgttgatttcattgctctcatttgtt 25154580  T
Q  199 cttctagaacctatgcttttaaaaagacactaaatttttgtct 241  Q
    ||   |||||||| || |||||  | |||||||||||||||||    
T  25154579 ctcacagaacctacgc-tttaagtaaacactaaatttttgtct 25154538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 23881364 - 23881432
Alignment:
Q  143 cttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||||| |||| |||||||||||| ||||||| || |||||||||||||||||||    
T  23881364 cttttcttcagacgcttcaagcttcattcttgttgattccattgctatcttttgttcttctagaaccta 23881432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21198981 - 21198931
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcct 51  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  21198981 aacaacctttgaagctttaagtctctcatcttctgatgaacttcagctcct 21198931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9398721 - 9398674
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaact 48  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  9398721 aacaacctttgaacctttaagtctctcatcttctgatgaacttcaact 9398674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 642577 - 642488
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctc-atttgttctt 201  Q
    ||||||||| ||||||||| |||||| | | |||||||||||||||||||| ||||||| |||| |||| ||| |||||| ||||||||||    
T  642577 tcacttcagaagcacttga-cttcaggatcacttttcttcagacgcttcaagcttcctttttgtcgattccatagctctcaatttgttctt 642488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 642684 - 642646
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatga 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  642684 aacaacctttgaagctttaagtctctcatcttctgatga 642646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 201
Target Start/End: Original strand, 6499489 - 6499578
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctc-atttgttctt 201  Q
    |||||||| |||||||||| |||||||| | ||| | |||||| ||||||| ||||||| ||||||||||||| |||||| ||||||||||    
T  6499489 tcacttcatgagcacttga-cttcagaaacacttcttttcagatgcttcaagcttcctttttgttgatttcatagctctcaatttgttctt 6499578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 21099574 - 21099475
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctc-tcatttgttcttctagaacct 210  Q
    ||||||||||||||||||| |||||  | | |||||||||||||||||||| | ||||| ||||||||| ||| |||| | ||||||||||| | |||||    
T  21099574 tcacttcaggagcacttga-cttcatgagcacttttcttcagacgcttcaagcctcctttttgttgattccatggctcttaatttgttcttccaaaacct 21099476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 21910829 - 21910893
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||| || ||||||| |||||||||   |||||||| |||||||||||||||||||    
T  21910829 tcttcagacgctttaagcttcctttttgttgattcatttgctctcttttgttcttctagaaccta 21910893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 26784644 - 26784708
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||| || ||||||| ||||||||| | |||||||| |||||||||| ||| ||||    
T  26784644 tcttcagacgctttaagcttcctttttgttgattcctttgctctcttttgttcttcaagagccta 26784708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 34638795 - 34638856
Alignment:
Q  182 cattgctctcatttgttcttctagaacctatgct---tttaaaaagacactaaatttttgtc 240  Q
    ||||||||| ||||||||||||||||||||||||   | || ||||||| ||||||||||||    
T  34638795 cattgctctaatttgttcttctagaacctatgcttgatatataaagacattaaatttttgtc 34638856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 7745530 - 7745432
Alignment:
Q  114 acttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctat 212  Q
    ||||||||||||||   |||| || | | ||| |||||||||||||||| ||||||| ||||||||    |||||||| |||||||||  |||||||||    
T  7745530 acttcaggagcactatgactttaggagcacttctcttcagacgcttcaagcttcctttttgttgatccatttgctctcttttgttctttcagaacctat 7745432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 9398628 - 9398551
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctct 190  Q
    |||||||||||||||||| ||||||| | | ||| |||||| | ||||||| ||||||| ||||||||| ||| |||||    
T  9398628 tcacttcaggagcacttg-acttcagcagcacttctcttcaaatgcttcaagcttcctttttgttgattccatagctct 9398551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 21099681 - 21099643
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatga 39  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  21099681 aacagcctttgaagctttaagtctctgatcttctgatga 21099643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 22403931 - 22403861
Alignment:
Q  172 ttgttgatttcattgctctcatttgttcttctagaacctatgctttta-aaaagacactaaatttttgtct 241  Q
    |||| |||| ||||||||||||||||||||| | ||| |||||||  |  |||||||||||||||||||||    
T  22403931 ttgtagattccattgctctcatttgttcttccataacatatgcttgaattaaagacactaaatttttgtct 22403861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 21072091 - 21072027
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||| ||||||| ||||||||| | | |||||  |||||||||  ||||||||    
T  21072091 tcttcagacgcttcaagcttcctttttgttgattccttagctcttttttgttctttcagaaccta 21072027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 22403979 - 22403951
Alignment:
Q  132 cttcagaacctcttttcttcagacgcttc 160  Q
    |||||||||||||||||||||||||||||    
T  22403979 cttcagaacctcttttcttcagacgcttc 22403951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23412950 - 23412906
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    ||||||||||||||||||||||||  ||||| ||||||| |||||    
T  23412950 aacaacctttgaagctttaagtcttgcatctcctgatgaacttca 23412906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 22461497 - 22461389
Alignment:
Q  132 cttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaa 231  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||  ||||||||||| |||||| |||||||||    
T  22461497 cttcaaaacctcttttcttcagacgtttcaagcttccttcttgttgattccattgctctcttttgttcttacagaacctatgc-tttaaagagacactaa 22461399  T
Q  232 atttttgtct 241  Q
    ||||||||||    
T  22461398 atttttgtct 22461389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 19956238 - 19956129
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttc-attgctctcatttgttcttctagaacct 210  Q
    ||||||||||||||||||  ||||||||| |||||| ||||||||||||||  |||||||||||||||| | |||||||||||||||||||| ||||| |    
T  19956238 tcacttcaggagcacttgt-cttcagaacatctttttttcagacgcttcaagtttccttcttgttgattccaattgctctcatttgttcttccagaactt 19956140  T
Q  211 atgcttttaaa 221  Q
    | |||||||||    
T  19956139 aagcttttaaa 19956129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 241
Target Start/End: Original strand, 19707767 - 19707894
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||||||| |||||||| | | ||||||||||||  |||||| ||||||| ||||||||| |||||| |||||||||||||| | ||||||    
T  19707767 tcacttcaggagcactt-aacttcaggagcacttttcttcagattcttcaagcttcctttttgttgattccattgccctcatttgttcttccataaccta 19707865  T
Q  212 tgcttttaaaaagacactaaatttttgtct 241  Q
    | | |||||| ||||||| |||||||||||    
T  19707866 tac-tttaaatagacacttaatttttgtct 19707894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 19156446 - 19156545
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  ||||||| | | ||| ||||||||||||| || ||||||| ||||||||  | |||||||| |||||||||||||||||||    
T  19156446 tcacttcaggagcactttgacttcaggagcacttctcttcagacgctttaagcttcctttttgttgatccctttgctctcttttgttcttctagaaccta 19156545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 20382283 - 20382184
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  ||||||| | | ||| |||||||||||||||| ||||||| ||||||||| |||| ||||| |||||||||  ||||||||    
T  20382283 tcacttcaggagcactttgacttcaggagcacttctcttcagacgcttcaagcttcctttttgttgattccattactctcttttgttctttcagaaccta 20382184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 17441710 - 17441610
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  ||||||| | | ||| ||||||||||||| || ||||||| | ||||||| | |||||||| |||||||||| ||||||||    
T  17441710 tcacttcaggagcactttgacttcaggagcacttctcttcagacgctttaagcttccttttcgttgattcctttgctctcttttgttcttccagaaccta 17441611  T
Q  212 t 212  Q
    |    
T  17441610 t 17441610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 602621 - 602523
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||| || |||||| | | ||| |||| ||||||||||||||||||| ||||||||| | | |||||| |||||||||| ||||||||    
T  602621 tcacttcaggagcactaga-cttcagcaacgcttctctttagacgcttcaaacttcctttttgttgattccttagctctcttttgttcttccagaaccta 602523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 18772912 - 18773017
Alignment:
Q  132 cttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaa 231  Q
    ||||||||||||||||||||| | |||||||  |||||| |||| |||| ||||||||||||||||||||| ||||| | | | |||| | |||||||||    
T  18772912 cttcagaacctcttttcttcaaatgcttcaagtttcctttttgtagattccattgctctcatttgttcttc-agaacttgtac-tttagagagacactaa 18773009  T
Q  232 atttttgt 239  Q
    ||||||||    
T  18773010 atttttgt 18773017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 20255455 - 20255356
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  ||||||| | |  || ||||||||||||| |||||||||| ||||||||| | |||||||| |||||| ||| ||||||||    
T  20255455 tcacttcaggagcactttgacttcaggagcagttctcttcagacgctttaaacttcctttttgttgattcctttgctctcttttgttgttccagaaccta 20255356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 23772683 - 23772762
Alignment:
Q  164 cttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaaatttttgtctgtgct 246  Q
    ||||||| |||| |||| ||||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||| ||||    
T  23772683 cttcctttttgtagattccattgctctcatttgttcttc-agaacctatgctttt--aaacacactaaatttttgtctatgct 23772762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17701902 - 17701946
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  17701902 aacaacctttgaagctttaagtctctcatcttctgatgaacttca 17701946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 16189298 - 16189363
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctat 212  Q
    |||||||||||||||| ||||||| |||||||||   |||||||| |||||||||| |||||||||    
T  16189298 tcttcagacgcttcaagcttcctttttgttgattcatttgctctcttttgttcttccagaacctat 16189363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 18722634 - 18722419
Alignment:
Q  7 ctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatgaaaaactgtttctagttatgttgcttctgacgaggtgtttctgatgaactt 106  Q
    ||||||||| |||| ||| |||||||||||||||||||  ||||| |||||| || | |||| |  |||| |||||||| || ||| ||||||| |||||    
T  18722634 ctttgaagcattaactctttcatcttctgatgatcttctgctcctgatgaaagacagcttctggggatgtagcttctgatgaagtgcttctgatcaactt 18722535  T
Q  107 atttct-----------cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctca-tt 194  Q
      ||||           || |||| ||| |||||| ||||| || | |||||||||| ||||||||| ||| ||| ||||||||| ||||||||| | ||    
T  18722534 gcttctaatgacgtgatcatttcatgagaacttga-cttcataatcacttttcttcatacgcttcaagctttctttttgttgattccattgctcttaatt 18722436  T
Q  195 tgttcttctagaaccta 211  Q
    |||||||| ||||||||    
T  18722435 tgttcttccagaaccta 18722419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 17525616 - 17525528
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttctt 201  Q
    ||||||||||||||||||  |||||| | | ||| | |||||| ||||||| |||| || ||||||||||| |||||||| |||||||||    
T  17525616 tcacttcaggagcacttgt-cttcaggagcacttcttttcagatgcttcaatcttcatttttgttgatttctttgctctcttttgttctt 17525528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 19943501 - 19943601
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttg-ttgatttcattgctctcatttgttcttctagaacct 210  Q
    ||||||||||||||||  | |||||| | | ||| |||||||| ||||||| |||| || ||| |||||| |||| ||||| ||||||||||||||||||    
T  19943501 tcacttcaggagcactata-cttcaggagcacttctcttcagatgcttcaagcttcttttttggttgattccattactctcttttgttcttctagaacct 19943599  T
Q  211 at 212  Q
    ||    
T  19943600 at 19943601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 18121011 - 18120911
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||   |||||| | |  || |||||| |||||| || ||||||| |||||||||   |||||||| |||||||||| ||||||||    
T  18121011 tcacttcaggagcactttgtcttcaggagcagttctcttcaaacgctttaagcttcctttttgttgattcatttgctctcttttgttcttccagaaccta 18120912  T
Q  212 t 212  Q
    |    
T  18120911 t 18120911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 18730979 - 18730766
Alignment:
Q  7 ctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatgaaaaactgtttctagttatgttgcttctgacgaggtgtttctgatgaactt 106  Q
    ||||||||| |||| ||| |||||||||||||||||||  ||||| |||||| || | |||| |  |||| |||||||| || ||| ||||||| |||||    
T  18730979 ctttgaagcattaactctttcatcttctgatgatcttctgctcctgatgaaagacagcttctggggatgtagcttctgatgaagtgcttctgatcaactt 18730880  T
Q  107 atttc-----------tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctc-tcatt 194  Q
      |||           ||| |||| ||| ||||| |||||| || | |||||||||| ||||||||| ||| ||| ||||||||| |||||||| | |||    
T  18730879 gcttctgatgacgtcatcatttcatgagaacttg-acttcataatcacttttcttcatacgcttcaagctttctttttgttgattccattgctcttaatt 18730781  T
Q  195 tgttcttctagaacc 209  Q
    |||||||| ||||||    
T  18730780 tgttcttccagaacc 18730766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19707662 - 19707706
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||||    
T  19707662 aacagcctttgaagctttaattctttcatcttctgatgatcttca 19707706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 21933200 - 21933263
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    ||||||||||||| || ||||||| ||||||||| | ||||||||  ||||||||| |||||||    
T  21933200 tcttcagacgctttaagcttcctttttgttgattcctttgctctctattgttcttccagaacct 21933263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 26833322 - 26833416
Alignment:
Q  132 cttcagaacctcttttcttcagacgctt----------caaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgctt 216  Q
    ||||||||||||||||||||||||||||          ||| | ||||| |||| ||||  |||||||||||||||||||| |||||||||||||    
T  26833322 cttcagaacctcttttcttcagacgctttcttgcaacacaagcctcctttttgtagattctattgctctcatttgttcttccagaacctatgctt 26833416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 23263427 - 23263389
Alignment:
Q  172 ttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  23263427 ttgttgatttcattgctctcttttgttcttcgagaacct 23263389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18321153 - 18321109
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    ||||||||||||||||||||||||  ||||| ||||||| |||||    
T  18321153 aacaacctttgaagctttaagtcttgcatctcctgatgaacttca 18321109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 29693616 - 29693680
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||| |||| || ||||||| ||||||||| |  ||||||| ||||||||||||| |||||    
T  29693616 tcttcagatgctttaagcttcctttttgttgattcctctgctctcttttgttcttctaggaccta 29693680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33083014 - 33083058
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    ||||||||||||||||||||||||  ||||| ||||||| |||||    
T  33083014 aacaacctttgaagctttaagtcttgcatctcctgatgaacttca 33083058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 18896377 - 18896269
Alignment:
Q  132 cttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaa 231  Q
    ||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| |||||| ||    
T  18896377 cttcagaacctcttttcttcagatgcttcatgcttccttcttgttgattccattgctctcatttgttcttccagaacctatg-atttaaagagacacaaa 18896279  T
Q  232 atttttgtct 241  Q
    ||||||||||    
T  18896278 atttttgtct 18896269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 17024790 - 17024691
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||| ||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  17024790 tcacttcagaagcactt-aactttagaacctcttttcttcagatgcttcaagcttccttcttgttgattccattgatctcatttgttcttccagaaccta 17024692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 21191688 - 21191564
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||| |||||| |||||| | | |||||||||||| ||||||| ||||||||||||||||| || ||||||| |||||||||| |||||||     
T  21191688 tcacttcaggaggacttga-cttcaggagcacttttcttcagatgcttcaagcttccttcttgttgattccaatgctctcgtttgttcttccagaacct- 21191591  T
Q  212 tgcttttaaaaagacactaaatttttgt 239  Q
    | | |||||| |||||||||||||||||    
T  21191590 tac-tttaaatagacactaaatttttgt 21191564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 12613732 - 12613505
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttc------tgatgatcttcaactcctaatgaaaaactgtttctagttatgttgcttctgacgaggtgtt 94  Q
    |||||||||||||||||||| ||||||||||||      |||||||||||| || || |||||| |  | || | || ||||||||||||| |||||| |    
T  12613732 aacaacctttgaagctttaaatctctcatcttcagctcgtgatgatcttcagcttctgatgaaagaacgcttttggtgatgttgcttctgatgaggtggt 12613633  T
Q  95 tctgatgaacttatttct-----------cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttca 183  Q
    ||| ||||||||  ||||           ||||||||||||||||| ||||||||| | || ||||||||| ||||||| ||||||| ||||||||| ||    
T  12613632 tctaatgaacttgcttctgatgacgtcatcacttcaggagcacttg-acttcagaatcactattcttcagatgcttcaagcttcctttttgttgattcca 12613534  T
Q  184 ttgctctca-tttgttcttctagaaccta 211  Q
    | ||||| | ||| |||||| ||||||||    
T  12613533 tagctcttagttttttcttccagaaccta 12613505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 24227745 - 24227666
Alignment:
Q  164 cttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaaatttttgtctgtgct 246  Q
    ||||||| |||| |||| ||||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||| ||||    
T  24227745 cttcctttttgtagattccattgctctcatttgttcttc-agaacctatgctttt--aaacacactaaatttttgtctatgct 24227666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 22154147 - 22154245
Alignment:
Q  114 acttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctat 212  Q
    ||||||||||||||   ||||||| | | ||| |||||||||||||||| |||| || |||||||||   |||||||| |||||||||| |||||||||    
T  22154147 acttcaggagcactgtgacttcaggagcacttctcttcagacgcttcaagcttcatttttgttgattcatttgctctcttttgttcttccagaacctat 22154245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 20954228 - 20954164
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||| ||||||| ||||||| ||||||||| | |||||||| |||||||||||| ||||||    
T  20954228 tcttcagatgcttcaagcttcctttttgttgattcctttgctctcttttgttcttctaaaaccta 20954164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 48704506 - 48704570
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||| ||| ||||||| |||| || |||||||||||||||||||| |||||||||| ||||||||    
T  48704506 tctttagatgcttcaagcttcatttttgttgatttcattgctctcttttgttcttccagaaccta 48704570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 20109732 - 20109680
Alignment:
Q  164 cttccttcttgttgatttcattgctctcatttgttcttctagaacctatgctt 216  Q
    ||||||| |||| |||| ||||| ||||||||||||||| |||||||||||||    
T  20109732 cttcctttttgtagattccattgttctcatttgttcttccagaacctatgctt 20109680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 26701952 - 26701853
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctca-tttgttcttctagaacct 210  Q
    |||||||| |||||||||| |||||| | | |||||||||| ||||||||| ||||| |  |||||||| ||| ||||| | |||||||||| |||||||    
T  26701952 tcacttcatgagcacttga-cttcaggagcacttttcttcatacgcttcaagcttcccttatgttgattccatagctcttaatttgttcttccagaacct 26701854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 26702045 - 26702007
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatga 39  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  26702045 aacagcctttgaagctttaagtctcccatcttctgatga 26702007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 48704368 - 48704406
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatga 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  48704368 aacaacctttgaagctttaagtcttgcatcttctgatga 48704406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12284587 - 12284631
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    |||||||||||||||| |||||||  ||||||||||||| |||||    
T  12284587 aacaacctttgaagctctaagtcttgcatcttctgatgaacttca 12284631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 16870279 - 16870327
Alignment:
Q  164 cttccttcttgttgatttcattgctctcatttgttcttctagaacctat 212  Q
    ||||||| ||||  ||||||||||||||||||||||||  |||||||||    
T  16870279 cttccttgttgtaaatttcattgctctcatttgttctttcagaacctat 16870327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 17024873 - 17024837
Alignment:
Q  9 ttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  17024873 ttgaagctttaattctctcagcttctgatgatcttca 17024837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 19717811 - 19717875
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||| || ||||||| || |||||| | |||| ||| |||||||||| ||||||||    
T  19717811 tcttcagacgctttaagcttcctttttattgattcctttgccctcttttgttcttccagaaccta 19717875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 38282889 - 38282953
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||| || ||||||| || ||||||   |||||||  |||||||||||||||||||    
T  38282889 tcttcagacgctttaagcttcctttttattgattcatttgctctattttgttcttctagaaccta 38282953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 159219 - 159444
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatgaaaaactgtttctagttatgttgcttctgacgaggtgtttctgat 100  Q
    |||| ||||||||||| ||||||||||||||| ||||| |||||| || || ||||||||||| |||| || ||||||||||||| |||||| |||||||    
T  159219 aacatcctttgaagctctaagtctctcatcttttgatggtcttcagcttctgatgaaaaactgcttcttgtgatgttgcttctgatgaggtgcttctgat 159318  T
Q  101 gaacttatttc-----------tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctc 189  Q
    ||||||  |||           ||||||||||||||| | ||| |||  | | | || ||||||| ||||||| |||| |||||||||||| ||||||||    
T  159319 gaacttgcttctgatgacgtcatcacttcaggagcac-taaacatcatgagcac-ttccttcagatgcttcaagcttctttcttgttgattccattgctc 159416  T
Q  190 tcatttgttcttctagaacctatgcttt 217  Q
    ||||||||||||| ||||||||| ||||    
T  159417 tcatttgttcttccagaacctatacttt 159444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 241
Target Start/End: Complemental strand, 1342 - 1216
Alignment:
Q  113 cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctat 212  Q
    ||||| |||||||||||  ||||||||||||||||||||||| ||||||| |||||||||||||||||   ||||||||||||||||||| ||||||||     
T  1342 cacttaaggagcacttgt-cttcagaacctcttttcttcagatgcttcaagcttccttcttgttgattatgttgctctcatttgttcttccagaacctaa 1244  T
Q  213 gcttttaaaaagacactaaatttttgtct 241  Q
    || |||||| ||||| |||| ||||||||    
T  1243 gc-tttaaagagacaataaacttttgtct 1216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1468 - 1413
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatga 56  Q
    ||||||||||||||||| || ||||||| |||||||||||||||| ||||| ||||    
T  1468 aacaacctttgaagcttcaattctctcagcttctgatgatcttcagctcctgatga 1413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 145160 - 145263
Alignment:
Q  136 agaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaaattt 235  Q
    ||||||||||||||||||| ||||||| |||| ||||||| |||||||||| ||||||||||||||| ||||| | ||| |||||| |||||||||||||    
T  145160 agaacctcttttcttcagatgcttcaagcttctttcttgtagatttcattgttctcatttgttcttc-agaacatgtgc-tttaaagagacactaaattt 145257  T
Q  236 ttgtct 241  Q
    ||||||    
T  145258 ttgtct 145263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 8119 - 8228
Alignment:
Q  136 agaacctcttttcttcagacgcttcaaacttccttcttgt----tgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaa 231  Q
    ||||||||||||||||||| ||||||| ||| ||||||||    ||||| ||||||||||||||||||||| ||||| | |||||| ||| |||||||||    
T  8119 agaacctcttttcttcagatgcttcaagcttacttcttgtacgttgattccattgctctcatttgttcttccagaacatgtgctttaaaagagacactaa 8218  T
Q  232 atttttgtct 241  Q
    ||||||||||    
T  8219 atttttgtct 8228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5790 - 5845
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttcaactcctaatga 56  Q
    |||| |||||||||||| || ||| ||| |||||||||||||||||||||| ||||    
T  5790 aacagcctttgaagcttcaattctttcagcttctgatgatcttcaactcctgatga 5845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0861 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 4786 - 4688
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    |||||||||||||||||  ||||||| | | ||| |||||||| ||||||||||||||| ||||||||| | |||||||| |||||||||| |||||||    
T  4786 tcacttcaggagcactttgacttcaggagcacttctcttcagatgcttcaaacttcctttttgttgattcctttgctctcttttgttcttccagaacct 4688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 10171 - 10268
Alignment:
Q  143 cttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaaatttttgtct 241  Q
    ||||| |||||| ||||||| |||||||||||||||||  |||||||||||| ||||||| |||| |||| | |||||| |||||||||||||||||||    
T  10171 cttttattcagatgcttcaagcttccttcttgttgattcaattgctctcattcgttcttccagaatctatac-tttaaatagacactaaatttttgtct 10268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10067 - 10111
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    |||| ||||||||||||||||| |||||||||||||||| |||||    
T  10067 aacagcctttgaagctttaagtttctcatcttctgatgaacttca 10111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 74866 - 74963
Alignment:
Q  143 cttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaaatttttgtct 241  Q
    |||||||||||| ||||||| ||| ||||||||||||| || ||||||| |||||||||| ||||||||| | |||||  |||||||||||||||||||    
T  74866 cttttcttcagatgcttcaacctttcttcttgttgattccactgctctcgtttgttcttccagaacctatac-tttaagtagacactaaatttttgtct 74963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 74732 - 74776
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    |||||||||||||||||||| |||| || ||||||||||| ||||    
T  74732 aacaacctttgaagctttaattctcacagcttctgatgatgttca 74776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 20810 - 20710
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||||||   ||||||| | | ||| |||||||||||||||||||||||| ||||||||| | | |||||| |||||||||| ||||||||    
T  20810 tcacttcaggagcactattacttcaggagcacttctcttcagacgcttcaaacttcctttttgttgattccttagctctcttttgttcttccagaaccta 20711  T
Q  212 t 212  Q
    |    
T  20710 t 20710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 35990 - 35898
Alignment:
Q  144 ttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaaatttt 236  Q
    ||||||||| |  |||||||||||| |||||||||||  |||||||||||||||||||| |||||||||| ||| | | ||||||||||||||    
T  35990 ttttcttcaaatccttcaaacttccatcttgttgattctattgctctcatttgttcttccagaacctatggtttaatagagacactaaatttt 35898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 10065 - 10165
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||  ||||||||| |  || |||||||| ||||||| ||||||| ||||||||| |||| ||||| |||||||||  ||||||||    
T  10065 tcacttcaggagcactttgacttcagaagcatttctcttcagatgcttcaagcttcctttttgttgattccattcctctcttttgttctttcagaaccta 10164  T
Q  212 t 212  Q
    |    
T  10165 t 10165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0916 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 2438 - 2355
Alignment:
Q  159 tcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctatgctttta-aaaagacactaaatttttgtct 241  Q
    |||| ||| ||| |||| |||||||||||||||||||||||||| |||||||||||||  |  |||||||||||||||||||||    
T  2438 tcaagcttactttttgtagatttcattgctctcatttgttcttccagaacctatgcttgaattaaagacactaaatttttgtct 2355  T

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Target: scaffold0261 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 5762 - 5694
Alignment:
Q  143 cttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||| ||||||||||||||| ||||||||| | | |||||| |||||||||| ||||||||    
T  5762 cttttcttcagatgcttcaaacttcctttttgttgattccttagctctcttttgttcttccagaaccta 5694  T

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Target: scaffold0171 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 27284 - 27184
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    |||||||||||||||||   |||||||| | ||| |||||||| ||||||| ||||||| ||||||||| | |||||||| |||||| ||  ||||||||    
T  27284 tcacttcaggagcactttgccttcagaagcacttctcttcagatgcttcaagcttcctttttgttgattcctttgctctcttttgttatttcagaaccta 27185  T
Q  212 t 212  Q
    |    
T  27184 t 27184  T

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Target: scaffold0171; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27375 - 27331
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    ||||||||||||||||||||||||  ||||| ||||||| |||||    
T  27375 aacaacctttgaagctttaagtcttgcatctcctgatgaacttca 27331  T

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Target: scaffold0084 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 32743 - 32843
Alignment:
Q  112 tcacttcaggagcacttgaa-cttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    |||||||||||||||||    |||||||| | ||||||||||||||| | || ||||||| ||||||||| | || ||||| ||||||||||||||||||    
T  32743 tcacttcaggagcacttttgtcttcagaagcacttttcttcagacgccttaagcttcctttttgttgattcctttactctcttttgttcttctagaacct 32842  T
Q  211 a 211  Q
    |    
T  32843 a 32843  T

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Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 212627 - 212723
Alignment:
Q  114 acttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    |||||||||||||||  ||||||| | | ||| |||||||||| ||||| ||||||| ||||||||| | | |||||| |||||||||| |||||||    
T  212627 acttcaggagcactttgacttcaggagcacttctcttcagacgtttcaagcttcctttttgttgattccttagctctcttttgttcttccagaacct 212723  T

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Target: scaffold0026 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 151817 - 151775
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatctt 43  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  151817 aacaacctttgaagctttaagtctctcatcttctggtgatctt 151775  T

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Target: scaffold0026; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 8203 - 8267
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||| | || ||| ||| ||||||||| | |||||||| |||||||||| ||||||||    
T  8203 tcttcagacgccttaagcttactttttgttgattcctttgctctcttttgttcttccagaaccta 8267  T

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Target: scaffold0026; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 60322 - 60386
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||| | || |||| || ||||||||| | |||||||| |||||||||| ||||||||    
T  60322 tcttcagacgccttaagcttcatttttgttgattcctttgctctcttttgttcttccagaaccta 60386  T

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Target: scaffold0359 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 5531 - 5430
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctca-tttgttcttctagaacct 210  Q
    |||||||||||||||||  ||||||| | | ||| ||||||||||||||||  |||||| | |||||||   ||||||||| |||||||||| |||||||    
T  5531 tcacttcaggagcacttttacttcaggagcacttctcttcagacgcttcaaggttccttttagttgattcatttgctctcattttgttcttccagaacct 5432  T
Q  211 at 212  Q
    ||    
T  5431 at 5430  T

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Target: scaffold0243 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 4814 - 4750
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||||| || ||||||| ||||||||| | |||||| | |||||||||||||||||||    
T  4814 tcttcagacgctttaagcttcctttttgttgattcctttgctcccttttgttcttctagaaccta 4750  T

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Target: scaffold0146 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 15358 - 15456
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||| ||||||||| |||||| | | ||| ||||||||||||| || ||||||| ||||||||| | | |||||| |||||||||  ||||||||    
T  15358 tcacttcagaagcacttga-cttcaggagcacttctcttcagacgctttaagcttcctttttgttgattccttagctctcttttgttcttaaagaaccta 15456  T

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Target: scaffold0485 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 9213 - 9116
Alignment:
Q  114 acttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacctat 212  Q
    |||||| |||||||   ||||||| | | ||| |||||||||||||||| ||||||| |||||||||   |||||||| |||||||||| |||||||||    
T  9213 acttcaagagcactgtgacttcaggatcacttctcttcagacgcttcaagcttcctt-ttgttgattcatttgctctcttttgttcttccagaacctat 9116  T

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Target: scaffold0066 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 60724 - 60656
Alignment:
Q  111 ctcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatt 180  Q
    |||||||||||||||||  |||||||| | | ||| |||||||||||||||| ||||||| |||||||||    
T  60724 ctcacttcaggagcacta-aacttcaggagcacttctcttcagacgcttcaagcttcctttttgttgatt 60656  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 89909 - 89820
Alignment:
Q  113 cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttc 202  Q
    ||||||||||||||||   |||||| | |  |||||||||||||||| || ||||||| ||||||||| | ||||||||  |||||||||    
T  89909 cacttcaggagcactttgtcttcaggaacaattttcttcagacgctttaagcttcctttttgttgattcctttgctctctattgttcttc 89820  T

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Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 1045 - 1095
Alignment:
Q  166 tccttcttgttgatttcattgctctcatttgttcttctagaacctatgctt 216  Q
    ||||| |||| |||| ||||||||| ||||||||||| |||||||||||||    
T  1045 tcctttttgtagattacattgctcttatttgttcttccagaacctatgctt 1095  T

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Target: scaffold0161 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 9975 - 9880
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaac 208  Q
    ||||||||||||||| |  ||||||| | | ||| |||||| |  |||||| ||||||| ||||||||| |||||||||| |||||||||| |||||    
T  9975 tcacttcaggagcac-tatacttcaggagcacttctcttcatattcttcaagcttcctttttgttgattccattgctctcttttgttcttccagaac 9880  T

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Target: scaffold0083 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 25796 - 25732
Alignment:
Q  147 tcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaaccta 211  Q
    ||||||||||| | || ||||||| ||||||||| | |||||||| |||||||||| ||||||||    
T  25796 tcttcagacgccttaatcttcctttttgttgattcctttgctctcttttgttcttccagaaccta 25732  T

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Target: scaffold0035 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 19313 - 19214
Alignment:
Q  112 tcacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttcc-ttcttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    ||||||||||||||||||| |||||| | | ||| |||||||||||||||| ||||| || ||||||| | | | |||||| |||||||||| | |||||    
T  19313 tcacttcaggagcacttga-cttcaggagcacttctcttcagacgcttcaagcttccttttttgttgactccttagctctcttttgttcttccataacct 19215  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 269066 - 269121
Alignment:
Q  183 attgctctcatttgttcttctagaacctatgcttttaaaaagacactaaatttttgtct 241  Q
    |||||||||||||||||||| | ||||| ||||||||||  ||||||||||||||||||    
T  269066 attgctctcatttgttcttcaa-aacctgtgcttttaaa--gacactaaatttttgtct 269121  T

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Target: scaffold0251 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 7993 - 8059
Alignment:
Q  144 ttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    |||||||||||||||| || ||| ||| ||||||||| | ||||||||  ||||||||| |||||||    
T  7993 ttttcttcagacgctttaagctttctttttgttgattcctttgctctctattgttcttccagaacct 8059  T

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Target: scaffold0217 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 19338 - 19404
Alignment:
Q  144 ttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    ||||||||||| |||| || ||||||| ||||||||| | ||||||||  ||||||||| |||||||    
T  19338 ttttcttcagatgctttaagcttcctttttgttgattcctttgctctctattgttcttccagaacct 19404  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 143394 - 143460
Alignment:
Q  144 ttttcttcagacgcttcaaacttccttcttgttgatttcattgctctcatttgttcttctagaacct 210  Q
    |||||||||||||||| || ||||||| || |||||| | ||||||||  ||||||||| |||||||    
T  143394 ttttcttcagacgctttaagcttcctttttcttgattcctttgctctctattgttcttccagaacct 143460  T

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Target: scaffold1359 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1359
Description:

Target: scaffold1359; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 526 - 449
Alignment:
Q  113 cacttcaggagcacttgaacttcagaacctcttttcttcagacgcttcaaacttccttcttgttgatttcattgctct 190  Q
    ||||||||||||||||   |||||| | |  |||||||||||||||| || ||||||| ||||||||| | |||||||    
T  526 cacttcaggagcactttgtcttcaggagcagttttcttcagacgctttaagcttcctttttgttgattcctttgctct 449  T

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Target: scaffold0324 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0324
Description:

Target: scaffold0324; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 10128 - 10165
Alignment:
Q  8 tttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  10128 tttgaagctttaagtctcttatcttctgatgaacttca 10165  T

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Target: scaffold0324; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 10240 - 10309
Alignment:
Q  143 cttttcttcagacgcttcaaacttccttcttgttgatttcattgctc-tcatttgttcttctagaaccta 211  Q
    |||||||||||||||||||| ||||||| ||||| ||| ||| |||| | |||| |||||| ||||||||    
T  10240 cttttcttcagacgcttcaagcttcctttttgtttattccatagctcttaattttttcttccagaaccta 10309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 78773 - 78830
Alignment:
Q  177 gatttcattgctctcatttgttcttctagaacctatgcttttaaaaagacactaaattttt 237  Q
    |||| ||||||||||||||||||||| |||||||||||  |||| |||||||||| |||||    
T  78773 gattccattgctctcatttgttcttc-agaacctatgc--ttaataagacactaatttttt 78830  T

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Target: scaffold0210 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1825 - 1869
Alignment:
Q  1 aacaacctttgaagctttaagtctctcatcttctgatgatcttca 45  Q
    ||||||||||||||||||||||||  ||||| ||||||| |||||    
T  1825 aacaacctttgaagctttaagtcttgcatctcctgatgaacttca 1869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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