View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12781_low_31 (Length: 254)
Name: NF12781_low_31
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12781_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 3046186 - 3046407
Alignment:
| Q |
13 |
tccaaccccattacatagaagacattacatcaatcatacctagtggaaagacacacgtctttctccgcttccataaattaactacaatcattgagcttcc |
112 |
Q |
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| T |
3046186 |
tccaaccccattacatagaagacattacatcaatcataactagtggaaagacgcacgtctttcttcgcttccataaattaactacaatcattgagcttcc |
3046285 |
T |
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| Q |
113 |
aaatatggaagacttccttcatccaaccaaatcgagattcattcttcccatcatatattccaagaacatctaactaacggaatgatatcctttctcaaaa |
212 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
3046286 |
aaatatggaagtcttccttcatccaaccaaatcgagattcattcttcccatcatatattcc----------aactaacggaatcatatcctttctcaaaa |
3046375 |
T |
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| Q |
213 |
tccaccttcactaacaaacaccctttgctact |
244 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
3046376 |
tccaccttcactaacaaacacccttttctact |
3046407 |
T |
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