View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12781_low_4 (Length: 476)

Name: NF12781_low_4
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12781_low_4
NF12781_low_4
[»] chr5 (12 HSPs)
chr5 (11-463)||(38447471-38447911)
chr5 (368-463)||(26033204-26033299)
chr5 (368-463)||(38180937-38181032)
chr5 (368-463)||(38190099-38190194)
chr5 (368-463)||(38208161-38208256)
chr5 (368-463)||(38217324-38217419)
chr5 (368-463)||(38456297-38456392)
chr5 (246-279)||(38181145-38181178)
chr5 (246-279)||(38189953-38189986)
chr5 (246-279)||(38208369-38208402)
chr5 (246-279)||(38217178-38217211)
chr5 (246-279)||(38456505-38456538)
[»] chr1 (4 HSPs)
chr1 (175-288)||(38342950-38343063)
chr1 (175-288)||(38447143-38447256)
chr1 (376-463)||(38342754-38342844)
chr1 (376-463)||(38446947-38447037)
[»] chr3 (1 HSPs)
chr3 (209-279)||(6067706-6067776)
[»] chr4 (1 HSPs)
chr4 (330-463)||(53351281-53351414)
[»] chr6 (1 HSPs)
chr6 (398-460)||(4121652-4121714)


Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 463
Target Start/End: Complemental strand, 38447911 - 38447471
Alignment:
Q  11 cataggtggtggattctgagggagtggaggcagatcagattgcatagtcaaaagcataggtaaaattccagcgccacccctgaaattgacgaaagtaatt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  38447911 cataggtggtggattctgagggagtggaggcagatcagattgcatagtcaaaagtataggtgaaattccagcgccacccctgaaattgacgaaagtaatt 38447812  T
Q  111 gtaaatttaacgtataannnnnnnacggaaaactattattaatattggcaacactaatagatatatataaaagagaatagcaatgcataatctactcacc 210  Q
    |||||||||||||||||       || ||||||||||||||||||||||||||||||||||| ||||            |||||||||||||||||||||    
T  38447811 gtaaatttaacgtataatttttttacagaaaactattattaatattggcaacactaatagatgtata------------gcaatgcataatctactcacc 38447724  T
Q  211 tatcaatcaatcttgaggtagtatgattgcttgtagaagtacttcccacattattgtagaacatatttgaatcatcaaccaactttgaaaactgcttatt 310  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38447723 tatcaatcaatctcgaggtagtatgattgcttgtagaagtacttcccacattattgtagaacatatttgaatcatcaaccaactttgaaaactgcttatt 38447624  T
Q  311 tgagacatcaaagttattttcttgagaatcctcaacttgttggccactggaaccaccattcaactcatcatccagttccatgttgccagggaagggtgac 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38447623 tgagacatcaaagttattttcttgagaatcctcaacttgttggccactggaaccaccattcaactcatcatccagttccatgttgtcagggaagggtgac 38447524  T
Q  411 aagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 463  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  38447523 aagccacactttttatgttttctctttctcgcattccaaaagttcttgatgtc 38447471  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 26033204 - 26033299
Alignment:
Q  368 attcaactcatcatccagttccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 463  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| |  |||||| |||||||| ||||||||||||||||||||    
T  26033204 attcagctcatcatccagttccatgttgtcagggaagggtgacaagccacgcctttcaagttttctttttctcgcgttccaaaagttcttgatgtc 26033299  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 463
Target Start/End: Complemental strand, 38181032 - 38180937
Alignment:
Q  368 attcaactcatcatccagttccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 463  Q
    |||||||| || |||| ||||||||||| | |||||||||||||||||  |||||| |  |||||| |||||||||||||||||||||||||||||    
T  38181032 attcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtc 38180937  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 38190099 - 38190194
Alignment:
Q  368 attcaactcatcatccagttccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 463  Q
    |||||||| || |||| ||||||||||| | |||||||||||||||||  |||||| |  |||||| |||||||||||||||||||||||||||||    
T  38190099 attcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtc 38190194  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 463
Target Start/End: Complemental strand, 38208256 - 38208161
Alignment:
Q  368 attcaactcatcatccagttccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 463  Q
    |||||||| || |||| ||||||||||| | |||||||||||||||||  |||||| |  |||||| |||||||||||||||||||||||||||||    
T  38208256 attcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtc 38208161  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 38217324 - 38217419
Alignment:
Q  368 attcaactcatcatccagttccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 463  Q
    |||||||| || |||| ||||||||||| | |||||||||||||||||  |||||| |  |||||| |||||||||||||||||||||||||||||    
T  38217324 attcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtc 38217419  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 368 - 463
Target Start/End: Complemental strand, 38456392 - 38456297
Alignment:
Q  368 attcaactcatcatccagttccatgttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 463  Q
    |||||||| || |||| ||||||||||| | |||||||||||||||||  |||||| |  |||||| |||||||||||||||||||||||||||||    
T  38456392 attcaacttatgatccggttccatgttgtcggggaagggtgacaagccgagcttttcaagttttctttttctcgcattccaaaagttcttgatgtc 38456297  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 38181178 - 38181145
Alignment:
Q  246 gaagtacttcccacattattgtagaacatatttg 279  Q
    ||||||||||||||||||||||||||||| ||||    
T  38181178 gaagtacttcccacattattgtagaacatgtttg 38181145  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 38189953 - 38189986
Alignment:
Q  246 gaagtacttcccacattattgtagaacatatttg 279  Q
    ||||||||||||||||||||||||||||| ||||    
T  38189953 gaagtacttcccacattattgtagaacatgtttg 38189986  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 38208402 - 38208369
Alignment:
Q  246 gaagtacttcccacattattgtagaacatatttg 279  Q
    ||||||||||||||||||||||||||||| ||||    
T  38208402 gaagtacttcccacattattgtagaacatgtttg 38208369  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 38217178 - 38217211
Alignment:
Q  246 gaagtacttcccacattattgtagaacatatttg 279  Q
    ||||||||||||||||||||||||||||| ||||    
T  38217178 gaagtacttcccacattattgtagaacatgtttg 38217211  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 38456538 - 38456505
Alignment:
Q  246 gaagtacttcccacattattgtagaacatatttg 279  Q
    ||||||||||||||||||||||||||||| ||||    
T  38456538 gaagtacttcccacattattgtagaacatgtttg 38456505  T

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Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 175 - 288
Target Start/End: Complemental strand, 38343063 - 38342950
Alignment:
Q  175 atataaaagagaatagcaatgcataatctactcacctatcaatcaatcttgaggtagtatgattgcttgtagaagtacttcccacattattgtagaacat 274  Q
    |||||||||||||| ||| ||||||||| |||||||||||||||||| | || ||||||||||||| ||||||||||||||||||||||||| |||||||    
T  38343063 atataaaagagaatggcattgcataatcaactcacctatcaatcaatgtagaagtagtatgattgcatgtagaagtacttcccacattattgaagaacat 38342964  T
Q  275 atttgaatcatcaa 288  Q
    ||||||||||||||    
T  38342963 atttgaatcatcaa 38342950  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 175 - 288
Target Start/End: Complemental strand, 38447256 - 38447143
Alignment:
Q  175 atataaaagagaatagcaatgcataatctactcacctatcaatcaatcttgaggtagtatgattgcttgtagaagtacttcccacattattgtagaacat 274  Q
    |||||||||||||| ||| ||||||||| |||||||||||||||||| | || ||||||||||||| ||||||||||||||||||||||||| |||||||    
T  38447256 atataaaagagaatggcattgcataatcaactcacctatcaatcaatgtagaagtagtatgattgcatgtagaagtacttcccacattattgaagaacat 38447157  T
Q  275 atttgaatcatcaa 288  Q
    ||||||||||||||    
T  38447156 atttgaatcatcaa 38447143  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 463
Target Start/End: Complemental strand, 38342844 - 38342754
Alignment:
Q  376 catcatccagttccat---gttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 463  Q
    ||||| ||||||||||   |||| |||||||||||||||||| | |  ||| || |||||| ||||| || ||||||||||||||||||||    
T  38342844 catcaaccagttccatgttgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtc 38342754  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 463
Target Start/End: Complemental strand, 38447037 - 38446947
Alignment:
Q  376 catcatccagttccat---gttgccagggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgatgtc 463  Q
    ||||| ||||||||||   |||| |||||||||||||||||| | |  ||| || |||||| ||||| || ||||||||||||||||||||    
T  38447037 catcaaccagttccatgttgttgtcagggaagggtgacaagcaatgtctttgatgttttctttttcttgcgttccaaaagttcttgatgtc 38446947  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 6067706 - 6067776
Alignment:
Q  209 cctatcaatcaatcttgaggtagtatgattgcttgtagaagtacttcccacattattgtagaacatatttg 279  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  6067706 cctatcaatcaatgttgaagtagtatgattgcttgtagaagtacttcccacgttattgtagaacatgtttg 6067776  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 330 - 463
Target Start/End: Original strand, 53351281 - 53351414
Alignment:
Q  330 tcttgagaatcctcaacttgttggccactggaaccacc---attcaactcatcatccagttccatgttgccagggaagggtgacaagccacgctttttat 426  Q
    ||||| ||||||| ||||||||||| | | |||||||    |||||||||||||| ||||||||| ||| |||| ||||||||||    |||||||| |     
T  53351281 tcttgtgaatccttaacttgttggctatttgaaccacttttattcaactcatcattcagttccatcttgtcaggaaagggtgaca---tacgcttttcaa 53351377  T
Q  427 attttctctttctcgcattccaaaagttcttgatgtc 463  Q
     |||||| ||||| ||||||||||| |||||||||||    
T  53351378 gttttctttttcttgcattccaaaaattcttgatgtc 53351414  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 460
Target Start/End: Complemental strand, 4121714 - 4121652
Alignment:
Q  398 agggaagggtgacaagccacgctttttatattttctctttctcgcattccaaaagttcttgat 460  Q
    |||| ||||||| | ||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  4121714 agggtagggtgataggccactctttttatattttctttttcttgcattccaaaagttcttgat 4121652  T

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