View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12781_low_5 (Length: 461)
Name: NF12781_low_5
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12781_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 7 - 444
Target Start/End: Original strand, 37903356 - 37903793
Alignment:
| Q |
7 |
agtgagaagaagaggttctattaccttgataaacaaacaactaaattatcattccaaagaagaaatgacagaaaattaaatgtgaacatattgtagcact |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37903356 |
agtgagaagaagaggttctattaccttgataaacaaacaactaaattatcattccaaagaagaaatgacagaaaattaaatgtgaacatattgtagtact |
37903455 |
T |
|
| Q |
107 |
gtgctacaaagagcaaatgaacgtacttgagcgttgaaatgtccatcatgcagtttttgaaaaccaccagccttaattataaccgcaacattgtcctgtc |
206 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37903456 |
gtgctgcaaagagcaaatgaacgtacttgagcgttgaaatgtccatcatgcagtttttgaaaaccaccagccttaattataaccgcaacattgtcctgtc |
37903555 |
T |
|
| Q |
207 |
atacaaagcagttatgtcagaggcagcatatcaccaggcatcaatgattaataaagggccacatactatgctgaacgagtaaaaaacaaggaaactaact |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37903556 |
atacaaagcagttatgtcagaggcagcatatcaccaggcatcaatgattaataaagggccacatactatgctgaacgagtaaaaaacaaggaaactaact |
37903655 |
T |
|
| Q |
307 |
tcacctcattatcagccagaccatagagagcaaaagctgcgttgtgttgaacagaaccattctttgtgtcaagaagatcaagcagaggctctatacctcc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37903656 |
tcacctcattatcagccagaccatagagagcaaaagctgcgttgtgttgaacggaaccattctttgtgtcaagaagatcaagcagaggctctatacctcc |
37903755 |
T |
|
| Q |
407 |
attataagcaataccagcttgattgtgtgagtcctaac |
444 |
Q |
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| T |
37903756 |
attataagcaataccagcttgattgtgtgagtcctaac |
37903793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 7 - 444
Target Start/End: Original strand, 37909867 - 37910304
Alignment:
| Q |
7 |
agtgagaagaagaggttctattaccttgataaacaaacaactaaattatcattccaaagaagaaatgacagaaaattaaatgtgaacatattgtagcact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37909867 |
agtgagaagaagaggttctattaccttgataaacaaacaactaaattatcattccaaagaagaaatgacagaaaattaaatgtgaacatattgtagtact |
37909966 |
T |
|
| Q |
107 |
gtgctacaaagagcaaatgaacgtacttgagcgttgaaatgtccatcatgcagtttttgaaaaccaccagccttaattataaccgcaacattgtcctgtc |
206 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909967 |
gtgctgcaaagagcaaatgaacgtacttgagcgttgaaatgtccatcatgcagtttttgaaaaccaccagccttaattataaccgcaacattgtcctgtc |
37910066 |
T |
|
| Q |
207 |
atacaaagcagttatgtcagaggcagcatatcaccaggcatcaatgattaataaagggccacatactatgctgaacgagtaaaaaacaaggaaactaact |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37910067 |
atacaaagcagttatgtcagaggcagcatatcaccaggcatcaatgattaataaagggccacatactatgctgaacgagtaaaaaacaaggaaactaact |
37910166 |
T |
|
| Q |
307 |
tcacctcattatcagccagaccatagagagcaaaagctgcgttgtgttgaacagaaccattctttgtgtcaagaagatcaagcagaggctctatacctcc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37910167 |
tcacctcattatcagccagaccatagagagcaaaagctgcgttgtgttgaacggaaccattctttgtgtcaagaagatcaagcagaggctctatacctcc |
37910266 |
T |
|
| Q |
407 |
attataagcaataccagcttgattgtgtgagtcctaac |
444 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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|
| T |
37910267 |
attataagcaataccagcttgattgtgtgagtcctaac |
37910304 |
T |
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