View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12781_low_6 (Length: 450)
Name: NF12781_low_6
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12781_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 10 - 448
Target Start/End: Original strand, 35092964 - 35093395
Alignment:
| Q |
10 |
acatcacaaatagtgatgatcttcagctctaagcttattggtgacaatttgtcttttcccctctattggtaatttgtgttcctcatgctcatgctcatgc |
109 |
Q |
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| T |
35092964 |
acataacaaatagtgatgatcttcagctctaaacttattggtgacaatttgtcttttcccctctattggtaatttgtgttcctcatgctcatgctc---- |
35093059 |
T |
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| Q |
110 |
tcttatctgtctctctcttatagacaaatctagaggctactgagggtgcaggcacgggaagctcatcaattccagcaaatgcaagtttacttgggtaggt |
209 |
Q |
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| T |
35093060 |
--ttatctgtctctctcttatagacaaatctagaggctactgagggtgcaggcacgggaagctcatcaattccagcaaatgcaagtttacttgggtaggt |
35093157 |
T |
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| Q |
210 |
tggtttgagattgtgtagaattttggagttgattgaaaattactatatatacaatataaattagtcaaattatactttttgatgcatgcccgctctagga |
309 |
Q |
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| T |
35093158 |
tggtttgagattgtatagaattttggagttgattgaaaattac-atatatacaatataaattagtcaaattatactttttgatgcatgcccgctctagga |
35093256 |
T |
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| Q |
310 |
aaggtaattaatcaggtttaatattaaagtcagcagatgtagttgtgttgtctatatagttataaggagatctgcatcgccttacggtgcctgattttct |
409 |
Q |
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| T |
35093257 |
aaggtaattaatcaggtttaatattaaagtcagcagatgtagttgtgttgtctatatagttataaggagatctgcatcgccttacggtgcctgattttct |
35093356 |
T |
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| Q |
410 |
agtggggcttcagtcctctttacctgcatctgtgctgct |
448 |
Q |
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| T |
35093357 |
agtggggcttcagtcctctttatatgcatctgtgctgct |
35093395 |
T |
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Back To:
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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 32584302 - 32584495
Alignment:
| Q |
20 |
tagtgatgatcttcagctctaa-gcttattggtgacaatttgtcttttcccctctattggtaatttgtgttcctcatgctcatgctcatgctcttatctg |
118 |
Q |
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|||||||||||||||||||||| |||||| | ||| ||||| | ||||||| || | || |||||||||||||||| |||||||| || |||| |
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| T |
32584302 |
tagtgatgatcttcagctctaaagcttatcattaacattttgtatgttcccctttacttgttatttgtgttcctcatgttcatgctc------ttttctg |
32584395 |
T |
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| Q |
119 |
tctctctcttatagacaaatct---agaggctactgagggtgcaggcacgggaagctcatcaattccagcaaatgcaagtttacttgggtaggttggttt |
215 |
Q |
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| T |
32584396 |
tctttctattatagacaaatatggcagagactactgggggtgcaagcgatggaagttcatcaattccaggaaatgcaagtttacttgggtaagttggttt |
32584495 |
T |
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