View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12781_low_7 (Length: 411)
Name: NF12781_low_7
Description: NF12781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12781_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 7530519 - 7530124
Alignment:
| Q |
1 |
acaaacgctcaaaacggtgctacgaaaaacccttttcttcacttttcccacccaaacagagagaacgtagaaaaatggggggagaggagaaacggcatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7530519 |
acaaacgctcaaaacggtgctacgaaaaacccttttcttcacttttcccacccaaacagagacaacgtagaaaaatggggggagaggagaaacggcatca |
7530420 |
T |
|
| Q |
101 |
gatgatgcagaatctcttcggagatcaatctgaggaggaagaagatgaactcgaatccgaacatgaatccaatcctcaactcaattctgtaagtttatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7530419 |
gatgatgcagaatctcttcggagatcaatctgaggaggaagaagatgaactcgaatccgaacatgaatccaatcctcaactcaattctgtaagtttatca |
7530320 |
T |
|
| Q |
201 |
ttcaattcaattctgcataatttcaatannnnnnnctataccctagctagcttctgcgtgaaatttccaattgatctgtatatcatacatattcgtttgt |
300 |
Q |
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| T |
7530319 |
ttcaattcaattctgcataatttcaatctttttttctataccctagctagcttctgcgtgaaatttccaattgatctgtatatcatacatattcgtttgt |
7530220 |
T |
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| Q |
301 |
ttatgcatttggaagatcgtattgaaaattttaaatggtgaatttttggtattgcaggatgaaggagagggaggggtagggcaagatggtgaagag |
396 |
Q |
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| T |
7530219 |
ttatgcatttggaagatcgtattgaaaattttaaatggtgaatttttggtattgcaggatgaaggagagggaggggtagggcaagatggtgaagag |
7530124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 7538371 - 7538766
Alignment:
| Q |
1 |
acaaacgctcaaaacggtgctacgaaaaacccttttcttcacttttcccacccaaacagagagaacgtagaaaaatggggggagaggagaaacggcatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7538371 |
acaaacgctcaaaacggtgctacgaaaaacccttttcttcacttttcccacccaaacagagacaacgtagaaaaatggggggagaggagaaacggcatca |
7538470 |
T |
|
| Q |
101 |
gatgatgcagaatctcttcggagatcaatctgaggaggaagaagatgaactcgaatccgaacatgaatccaatcctcaactcaattctgtaagtttatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7538471 |
gatgatgcagaatctcttcggagatcaatctgaggaggaagaagatgaactcgaatccgaacatgaatccaatcctcaactcaattctgtaagtttatca |
7538570 |
T |
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| Q |
201 |
ttcaattcaattctgcataatttcaatannnnnnnctataccctagctagcttctgcgtgaaatttccaattgatctgtatatcatacatattcgtttgt |
300 |
Q |
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| T |
7538571 |
ttcaattcaattctgcataatttcaatctttttttctataccctagctagcttctgcgtgaaatttccaattgatctgtatatcatacatattcgtttgt |
7538670 |
T |
|
| Q |
301 |
ttatgcatttggaagatcgtattgaaaattttaaatggtgaatttttggtattgcaggatgaaggagagggaggggtagggcaagatggtgaagag |
396 |
Q |
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| T |
7538671 |
ttatgcatttggaagatcgtattgaaaattttaaatggtgaatttttggtattgcaggatgaaggagagggaggggtagggcaagatggtgaagag |
7538766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 99 - 395
Target Start/End: Complemental strand, 14957162 - 14956875
Alignment:
| Q |
99 |
cagatgatgcagaatctcttcggagatcaatctgaggaggaagaagatgaactcgaatccgaacatgaatccaatcctcaactcaattctgtaagtttat |
198 |
Q |
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||||||||||||||||| ||| ||||||||| || ||||||||||| |||||||||| || | ||||||||||||| ||||||||| ||||| |||| |
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| T |
14957162 |
cagatgatgcagaatctattcagagatcaattggaagaggaagaaga---actcgaatccaaatacgaatccaatcctcgactcaattcggtaagattat |
14957066 |
T |
|
| Q |
199 |
cattcaattcaattctgcataatttcaatannnnnnnctataccctagctagcttc------tgcgtgaaatttccaattgatctgtatatcatacatat |
292 |
Q |
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|||||| ||| | | ||||||||||| ||||||||||||| ||| || |||||||||| |||||||||| |||||| | |
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| T |
14957065 |
cattcagttctact-----taatttcaatatttttttctataccctagcttcattcaaattgtgtgtgaaatttc-aattgatctg------atacatgt |
14956978 |
T |
|
| Q |
293 |
tcgtttgtttatgcatttggaagatcgtattgaaaattttaaatggtgaatttttggtattgcaggatgaaggagagggaggggtagggcaagatggtga |
392 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |||| |
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| T |
14956977 |
tcgtttgtttatgcatttggaagatcatatttgaaatttgaaatggtgaatttatggtattgcaggatgaaggagagagaggggtaacgcaagaatgtga |
14956878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 354
Target Start/End: Complemental strand, 22637787 - 22637539
Alignment:
| Q |
105 |
atgcagaatctcttcggagatcaatctgaggaggaagaagatgaactcgaatccgaacatgaatccaatcctcaactcaattctgtaagtttatcattca |
204 |
Q |
| |
|
||||||||||| | | |||| ||||| || ||||||||| | ||| ||||||||||| | ||||||||||||| ||||||||||||||| || ||||||| |
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| T |
22637787 |
atgcagaatctatccagagaacaatcggaagaggaagaaaa-gaaatcgaatccgaatacgaatccaatcctcgactcaattctgtaagattttcattca |
22637689 |
T |
|
| Q |
205 |
attcaattctgcataatttcaatannnnnnnctataccctagct------agcttctgcgtgaaatttccaattgatctgtatatcatacatattcgttt |
298 |
Q |
| |
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|||| ||| ||||||||||| |||| ||||| | |||||||||||||||| ||||||||||| ||| ||||||||| |||| |
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| T |
22637688 |
attc-----tgcgtaatttcaatattttttttcatactgtagcttcattcaaattctgcgtgaaatttc-aattgatctgtgtatgatacatatttgttt |
22637595 |
T |
|
| Q |
299 |
gtttatgcatttggaagatcgtattgaaaattttaaatggtgaatttttggtattg |
354 |
Q |
| |
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||||||||||||| ||||||||||| ||||||| || |||||||||| | |||||| |
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|
| T |
22637594 |
gtttatgcatttgaaagatcgtatttaaaatttgaagtggtgaatttatagtattg |
22637539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 22637256 - 22637211
Alignment:
| Q |
349 |
gtattgcaggatgaaggagagggaggggtagggcaagatggtgaag |
394 |
Q |
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|||||| ||||||||||||||||||||||| ||||||| ||||||| |
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| T |
22637256 |
gtattgaaggatgaaggagagggaggggtaaggcaagaaggtgaag |
22637211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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